MD13G1132500.v1.1
TCP Family

T-complex protein 1 subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
N/A
Physical Location & Seq
Forward (+)
10054204 .. 10054716
513 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1132500.v1.1.491

Sequence Viewer

Length: 513 bp
ATGACCGTCCCCGTCGAGCTCACGGATTGTGATTCGCTTGTCAAGTCTGCAAGCACATCACTCAACAGCAAGGTGGTGAACCAGTACTTGACTCTGTTCGCGCTGATGGCCATGGACGCTGTGCTCTCTGTGGTGGACCCCGCGAAGCCAGAGGTGGTGGACCTAAGAGATATCAGGATCACGAAGAAACTTAGAGGAACCGTGGATGATACTGAGACGGTGAAGGGACTTGTTTTCGATAAGAAGGCGAGCTACGCTGCTGGTGGGCCGACGAGGATGAAGAACGCCAAGATTGCTGTGATTCAGTTCCAGACTATGACGAGCAAGAAGAAGACTAAGTACGTGGTGGTGGAAGACGATGACAATGACATGGCAAATAAAGAACTACTGTCGGTGGAGAAGTTGTTCGGGAATCAATCATGCAAGAAGCTTTATCAAAAGCTACAGACCACCAAATTCAAAAGAAAGGTAAGATGCCTTTGCTTTTGCTTTTGGTTGAACAGTCAAGGATAG

Protein Analysis

171

Amino Acids

19.06

Weight (kDa)

9.33

Isoelectric Point (pI)

24.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cpn60_TCP1 PF00118 3 - 126 1.7e-18 TCP-1/cpn60 chaperonin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 101, 143
AciI CCGC 1 cut(s) 141
AclWI GGATC 1 cut(s) 185
AcoI YGGCCR 1 cut(s) 108
AcsI RAATTY 1 cut(s) 455
AfaI GTAC 2 cut(s) 86, 341
AgsI TTSAA 2 cut(s) 460, 499
AloI GAACNNNNNNTCC 2 cut(s) 389, 421
AluBI AGCT 4 cut(s) 19, 252, 430, 442
AluI AGCT 4 cut(s) 19, 252, 430, 442
Alw21I GWGCWC 2 cut(s) 21, 126
Alw26I GTCTC 1 cut(s) 209
AlwI GGATC 1 cut(s) 185
AoxI GGCC 2 cut(s) 108, 266
ApeKI GCWGC 1 cut(s) 257
ApoI RAATTY 1 cut(s) 455
Asp700I GAANNNNTTC 1 cut(s) 404
AspLEI GCGC 1 cut(s) 103
AspS9I GGNCC 3 cut(s) 136, 160, 266
AsuHPI GGTGA 2 cut(s) 88, 232
AvaII GGWCC 2 cut(s) 136, 160
BalI TGGCCA 1 cut(s) 110
BanII GRGCYC 1 cut(s) 21
BarI GAAGNNNNNNTAC 4 cut(s) 236, 268, 323, 355
BbsI GAAGAC 2 cut(s) 338, 360
Bbv12I GWGCWC 2 cut(s) 21, 126
BbvI GCAGC 1 cut(s) 244
BccI CCATC 1 cut(s) 100
BcoDI GTCTC 1 cut(s) 209
BfmI CTRYAG 1 cut(s) 443
BisI GCNGC 1 cut(s) 258
BlsI GCNGC 1 cut(s) 259
BmcAI AGTACT 1 cut(s) 86
Bme18I GGWCC 2 cut(s) 136, 160
BmgT120I GGNCC 3 cut(s) 136, 160, 266
BmiI GGNNCC 2 cut(s) 138, 199
BmsI GCATC 1 cut(s) 464
BpiI GAAGAC 2 cut(s) 338, 360
BsaAI YACGTR 1 cut(s) 343
BsaJI CCNNGG 2 cut(s) 111, 201
BsaXI ACNNNNNCTCC 2 cut(s) 389, 419
Bse1I ACTGG 1 cut(s) 82
BseDI CCNNGG 2 cut(s) 111, 201
BseGI GGATG 2 cut(s) 211, 282
BseMII CTCAG 1 cut(s) 204
BseNI ACTGG 1 cut(s) 82
BseXI GCAGC 1 cut(s) 244
Bsh1236I CGCG 2 cut(s) 101, 143
BshFI GGCC 2 cut(s) 110, 268
BsiHKAI GWGCWC 2 cut(s) 21, 126
BslFI GGGAC 1 cut(s) 240
BsmAI GTCTC 1 cut(s) 209
BsmBI CGTCTC 1 cut(s) 209
BsmFI GGGAC 1 cut(s) 240
BsnI GGCC 2 cut(s) 110, 268
Bsp1286I GDGCHC 2 cut(s) 21, 126
Bsp143I GATC 1 cut(s) 177
Bsp19I CCATGG 1 cut(s) 111
BspACI CCGC 1 cut(s) 141
BspANI GGCC 2 cut(s) 110, 268
BspCNI CTCAG 1 cut(s) 205
BspFNI CGCG 2 cut(s) 101, 143
BspLI GGNNCC 2 cut(s) 138, 199
BspPI GGATC 1 cut(s) 185
BsrI ACTGG 1 cut(s) 82
BssECI CCNNGG 2 cut(s) 111, 201
BssMI GATC 1 cut(s) 177
BssT1I CCWWGG 1 cut(s) 111
Bst4CI ACNGT 5 cut(s) 7, 202, 220, 390, 503
BstBAI YACGTR 1 cut(s) 343
BstC8I GCNNGC 2 cut(s) 52, 250
BstDEI CTNAG 4 cut(s) 164, 191, 213, 336
BstDSI CCRYGG 2 cut(s) 111, 201
BstF5I GGATG 2 cut(s) 211, 282
BstFNI CGCG 2 cut(s) 101, 143
BstHHI GCGC 1 cut(s) 103
BstKTI GATC 1 cut(s) 180
BstMAI GTCTC 1 cut(s) 209
BstMBI GATC 1 cut(s) 177
BstMWI GCNNNNNNNGC 4 cut(s) 107, 116, 254, 293
BstSFI CTRYAG 1 cut(s) 443
BstUI CGCG 2 cut(s) 101, 143
BstV1I GCAGC 1 cut(s) 244
BstV2I GAAGAC 2 cut(s) 338, 360
BsuRI GGCC 2 cut(s) 110, 268
BtgI CCRYGG 2 cut(s) 111, 201
BtsCI GGATG 2 cut(s) 211, 282
Cac8I GCNNGC 2 cut(s) 52, 250
CfoI GCGC 1 cut(s) 103
Cfr13I GGNCC 3 cut(s) 136, 160, 266
CseI GACGC 1 cut(s) 125
Csp6I GTAC 2 cut(s) 85, 340
CviAII CATG 3 cut(s) 112, 370, 420
CviJI RGCY 7 cut(s) 19, 110, 148, 252, 268, 430, 442
CviKI_1 RGCY 7 cut(s) 19, 110, 148, 252, 268, 430, 442
CviQI GTAC 2 cut(s) 85, 340
DdeI CTNAG 4 cut(s) 164, 191, 213, 336
DpnI GATC 1 cut(s) 179
DpnII GATC 1 cut(s) 177
EaeI YGGCCR 1 cut(s) 108
Ecl136II GAGCTC 1 cut(s) 19
Eco130I CCWWGG 1 cut(s) 111
Eco24I GRGCYC 1 cut(s) 21
Eco32I GATATC 1 cut(s) 172
Eco47I GGWCC 2 cut(s) 136, 160
Eco53kI GAGCTC 1 cut(s) 19
EcoICRI GAGCTC 1 cut(s) 19
EcoRV GATATC 1 cut(s) 172
EcoT14I CCWWGG 1 cut(s) 111
EcoT38I GRGCYC 1 cut(s) 21
ErhI CCWWGG 1 cut(s) 111
Esp3I CGTCTC 1 cut(s) 209
FaeI CATG 3 cut(s) 115, 373, 423
FaiI YATR 4 cut(s) 113, 317, 371, 421
FaqI GGGAC 1 cut(s) 240
FatI CATG 3 cut(s) 111, 369, 419
FauI CCCGC 1 cut(s) 148
Fnu4HI GCNGC 1 cut(s) 258
FokI GGATG 2 cut(s) 218, 289
FriOI GRGCYC 1 cut(s) 21
Fsp4HI GCNGC 1 cut(s) 258
GlaI GCGC 1 cut(s) 102
GluI GCNGC 1 cut(s) 258
HaeIII GGCC 2 cut(s) 110, 268
HgaI GACGC 1 cut(s) 125
HhaI GCGC 1 cut(s) 103
Hin1II CATG 3 cut(s) 115, 373, 423
Hin6I GCGC 1 cut(s) 101
HinP1I GCGC 1 cut(s) 101
HindIII AAGCTT 1 cut(s) 428
HinfI GANTC 4 cut(s) 32, 91, 301, 412
HphI GGTGA 2 cut(s) 88, 232
Hpy166II GTNNAC 3 cut(s) 79, 136, 160
Hpy188III TCNNGA 4 cut(s) 175, 181, 310, 409
Hpy8I GTNNAC 3 cut(s) 79, 136, 160
Hpy99I CGWCG 2 cut(s) 17, 274
HpyAV CCTTC 2 cut(s) 217, 238
HpyCH4III ACNGT 5 cut(s) 7, 202, 220, 390, 503
HpyCH4IV ACGT 1 cut(s) 342
HpyCH4V TGCA 2 cut(s) 50, 423
HpyF10VI GCNNNNNNNGC 4 cut(s) 107, 116, 254, 293
HpyF3I CTNAG 4 cut(s) 164, 191, 213, 336
HpySE526I ACGT 1 cut(s) 342
Hsp92II CATG 3 cut(s) 115, 373, 423
HspAI GCGC 1 cut(s) 101
Kzo9I GATC 1 cut(s) 177
LpnPI CCDG 5 cut(s) 95, 160, 162, 246, 323
Lsp1109I GCAGC 1 cut(s) 244
LweI GCATC 1 cut(s) 464
MaeII ACGT 1 cut(s) 342
MalI GATC 1 cut(s) 179
MboI GATC 1 cut(s) 177
MboII GAAGA 5 cut(s) 196, 292, 340, 343, 365
MhlI GDGCHC 2 cut(s) 21, 126
MlsI TGGCCA 1 cut(s) 110
MluCI AATT 1 cut(s) 455
MluNI TGGCCA 1 cut(s) 110
MlyI GAGTC 1 cut(s) 85
MnlI CCTC 3 cut(s) 145, 188, 267
Mox20I TGGCCA 1 cut(s) 110
MroXI GAANNNNTTC 1 cut(s) 404
MscI TGGCCA 1 cut(s) 110
Msp20I TGGCCA 1 cut(s) 110
MvnI CGCG 2 cut(s) 101, 143
MwoI GCNNNNNNNGC 4 cut(s) 107, 116, 254, 293
NcoI CCATGG 1 cut(s) 111
NdeII GATC 1 cut(s) 177
NlaIII CATG 3 cut(s) 115, 373, 423
NlaIV GGNNCC 2 cut(s) 138, 199
PdmI GAANNNNTTC 1 cut(s) 404
PfeI GAWTC 3 cut(s) 32, 301, 412
PkrI GCNGC 1 cut(s) 259
PleI GAGTC 1 cut(s) 85
PpsI GAGTC 1 cut(s) 85
Ppu21I YACGTR 1 cut(s) 343
Psp124BI GAGCTC 1 cut(s) 21
PspN4I GGNNCC 2 cut(s) 138, 199
PspPI GGNCC 3 cut(s) 136, 160, 266
RsaI GTAC 2 cut(s) 86, 341
RsaNI GTAC 2 cut(s) 85, 340
SacI GAGCTC 1 cut(s) 21
SatI GCNGC 1 cut(s) 258
Sau3AI GATC 1 cut(s) 177
Sau96I GGNCC 3 cut(s) 136, 160, 266
ScaI AGTACT 1 cut(s) 86
SchI GAGTC 1 cut(s) 85
SduI GDGCHC 2 cut(s) 21, 126
SetI ASST 9 cut(s) 21, 75, 156, 165, 254, 345, 432, 444, 471
SfaNI GCATC 1 cut(s) 464
SfcI CTRYAG 1 cut(s) 443
SinI GGWCC 2 cut(s) 136, 160
Sse9I AATT 1 cut(s) 455
SsiI CCGC 1 cut(s) 141
SstI GAGCTC 1 cut(s) 21
StyI CCWWGG 1 cut(s) 111
TaaI ACNGT 5 cut(s) 7, 202, 220, 390, 503
TaiI ACGT 1 cut(s) 345
TaqI TCGA 2 cut(s) 15, 237
TasI AATT 1 cut(s) 455
TatI WGTACW 1 cut(s) 84
TfiI GAWTC 3 cut(s) 32, 301, 412
TseI GCWGC 1 cut(s) 257
TspDTI ATGAA 1 cut(s) 293
TspGWI ACGGA 1 cut(s) 38
VpaK11BI GGWCC 2 cut(s) 136, 160
XapI RAATTY 1 cut(s) 455
XmnI GAANNNNTTC 1 cut(s) 404
ZrmI AGTACT 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.