MD13G1170900.v1.1
MYB Family

Protein ALWAYS EARLY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
N/A
Physical Location & Seq
Reverse (-)
13910015 .. 13910877
863 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1170900.v1.1.491

Sequence Viewer

Length: 639 bp
ATGAATAAAGGTAAACAGCCTTCTCATTATATTACACACCCAAGGCAAGGGAAATTGGTGAATCCTCCACGGAATGCATTTTCTTCTGCTGAGCTAGACATGCAAAAATCATCAATGGAGAAGGATAGAAGGTCTACTGAGGGTATTGTAGATGAACAGCCTGACAAACTGGTTCCTTCATTTCGTAACAGAGAACTAAATATTAAGGAAAAACCTTCTAATTGCTTGTCTCGGTATCAAGTGCAAAGATGGTGTGCTTTTGAATGGTTTTACAGTGCAATTGATTACCCATGGCTTGCTACAAGGGAGTTTGTGGAGTACTTGAATCATGTTGGATTAGGTCATGTTCCAAGATTAACTCGTGTTGAATGGGGTGTCATACGGAGTTCCCTTGGCAGACCGCGGAGATTTTCTGAGCAGTTTCTGAAGGAAGAAAAAGAGAAGCTTAATCAGTACCGGGAATCTGTTAGAACACATTATGCTGAACTTAATGCTGGAACGAGGGAAGAACTTCCAACTGACTTAGCTCGTCCTTTATCAGTAGAACAGCATGTCATTGCCTTTCATCCCAGGACAAGAGAGATCCACAACGGAATTGTACTAACCGTCGACCATTGTAGGTGTCAGTGTTCAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04218 map04218
Pfam Domains
Protein Families
DIRP Myb_DNA-binding

Protein Analysis

213

Amino Acids

24.92

Weight (kDa)

9.13

Isoelectric Point (pI)

45.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIRP PF06584 89 - 190 1.6e-33 DIRP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 134, 609
AccII CGCG 1 cut(s) 403
AciI CCGC 2 cut(s) 401, 403
AclWI GGATC 1 cut(s) 577
AcuI CTGAAG 1 cut(s) 446
AfaI GTAC 3 cut(s) 320, 455, 600
AfiI CCNNNNNNNGG 1 cut(s) 47
AgsI TTSAA 3 cut(s) 263, 325, 368
AjnI CCWGG 1 cut(s) 569
AluBI AGCT 3 cut(s) 94, 445, 527
AluI AGCT 3 cut(s) 94, 445, 527
Alw26I GTCTC 1 cut(s) 234
AlwI GGATC 1 cut(s) 577
AlwNI CAGNNNCTG 1 cut(s) 424
Asp700I GAANNNNTTC 1 cut(s) 510
AsuC2I CCSGG 1 cut(s) 458
AsuHPI GGTGA 1 cut(s) 70
BarI GAAGNNNNNNTAC 1 cut(s) 36
BauI CACGAG 1 cut(s) 360
BccI CCATC 1 cut(s) 243
BciT130I CCWGG 1 cut(s) 571
BcnI CCSGG 1 cut(s) 458
BcoDI GTCTC 1 cut(s) 234
BfaI CTAG 1 cut(s) 95
BlpI GCTNAGC 1 cut(s) 90
BmcAI AGTACT 1 cut(s) 320
Bme1390I CCNGG 2 cut(s) 458, 571
BmiI GGNNCC 1 cut(s) 174
BmrFI CCNGG 2 cut(s) 458, 571
Bpu1102I GCTNAGC 1 cut(s) 90
BpuMI CCSGG 1 cut(s) 458
BsaJI CCNNGG 6 cut(s) 41, 68, 290, 391, 401, 569
Bsc4I CCNNNNNNNGG 1 cut(s) 47
Bse1I ACTGG 1 cut(s) 174
Bse3DI GCAATG 1 cut(s) 555
BseBI CCWGG 1 cut(s) 571
BseDI CCNNGG 6 cut(s) 41, 68, 290, 391, 401, 569
BseGI GGATG 1 cut(s) 565
BseLI CCNNNNNNNGG 1 cut(s) 47
BseMI GCAATG 1 cut(s) 555
BseMII CTCAG 3 cut(s) 81, 129, 405
BseNI ACTGG 1 cut(s) 174
Bsh1236I CGCG 1 cut(s) 403
BsiSI CCGG 1 cut(s) 457
BslI CCNNNNNNNGG 1 cut(s) 47
BsmAI GTCTC 1 cut(s) 234
BsmI GAATGC 1 cut(s) 79
Bsp143I GATC 1 cut(s) 582
Bsp1720I GCTNAGC 1 cut(s) 90
Bsp19I CCATGG 1 cut(s) 290
BspACI CCGC 2 cut(s) 401, 403
BspCNI CTCAG 3 cut(s) 82, 130, 406
BspFNI CGCG 1 cut(s) 403
BspLI GGNNCC 1 cut(s) 174
BspPI GGATC 1 cut(s) 577
BsrDI GCAATG 1 cut(s) 555
BsrI ACTGG 1 cut(s) 174
BssECI CCNNGG 6 cut(s) 41, 68, 290, 391, 401, 569
BssMI GATC 1 cut(s) 582
BssSI CACGAG 1 cut(s) 360
BssT1I CCWWGG 3 cut(s) 41, 290, 391
Bst2BI CACGAG 1 cut(s) 360
Bst2UI CCWGG 1 cut(s) 571
Bst4CI ACNGT 2 cut(s) 275, 607
BstC8I GCNNGC 1 cut(s) 297
BstDEI CTNAG 4 cut(s) 90, 138, 414, 523
BstDSI CCRYGG 3 cut(s) 68, 290, 401
BstF5I GGATG 1 cut(s) 565
BstFNI CGCG 1 cut(s) 403
BstKTI GATC 1 cut(s) 585
BstMAI GTCTC 1 cut(s) 234
BstMBI GATC 1 cut(s) 582
BstMWI GCNNNNNNNGC 1 cut(s) 100
BstNI CCWGG 1 cut(s) 571
BstNSI RCATGY 2 cut(s) 103, 554
BstSCI CCNGG 2 cut(s) 456, 569
BstUI CGCG 1 cut(s) 403
BstX2I RGATCY 1 cut(s) 582
BstYI RGATCY 1 cut(s) 582
BtgI CCRYGG 3 cut(s) 68, 290, 401
BtsCI GGATG 1 cut(s) 565
BtsIMutI CAGTG 2 cut(s) 280, 632
Cac8I GCNNGC 1 cut(s) 297
CaiI CAGNNNCTG 1 cut(s) 424
Cfr42I CCGCGG 1 cut(s) 404
Csp6I GTAC 3 cut(s) 319, 454, 599
CviAII CATG 5 cut(s) 100, 291, 329, 344, 551
CviJI RGCY 6 cut(s) 19, 94, 160, 295, 445, 527
CviKI_1 RGCY 6 cut(s) 19, 94, 160, 295, 445, 527
CviQI GTAC 3 cut(s) 319, 454, 599
DdeI CTNAG 4 cut(s) 90, 138, 414, 523
DpnI GATC 1 cut(s) 584
DpnII GATC 1 cut(s) 582
Eco130I CCWWGG 3 cut(s) 41, 290, 391
Eco57I CTGAAG 1 cut(s) 446
EcoRII CCWGG 1 cut(s) 569
EcoT14I CCWWGG 3 cut(s) 41, 290, 391
EcoT22I ATGCAT 1 cut(s) 79
ErhI CCWWGG 3 cut(s) 41, 290, 391
FaeI CATG 5 cut(s) 103, 294, 332, 347, 554
FaiI YATR 8 cut(s) 30, 101, 292, 330, 345, 380, 480, 552
FalI AAGNNNNNCTT 2 cut(s) 429, 461
FatI CATG 5 cut(s) 99, 290, 328, 343, 550
FblI GTMKAC 2 cut(s) 134, 609
FokI GGATG 1 cut(s) 552
FspBI CTAG 1 cut(s) 95
HapII CCGG 1 cut(s) 457
Hin1II CATG 5 cut(s) 103, 294, 332, 347, 554
HincII GTYRAC 1 cut(s) 610
HindII GTYRAC 1 cut(s) 610
HindIII AAGCTT 1 cut(s) 443
HinfI GANTC 3 cut(s) 61, 325, 461
HpaII CCGG 1 cut(s) 457
HphI GGTGA 1 cut(s) 70
Hpy166II GTNNAC 3 cut(s) 14, 135, 610
Hpy188I TCNGA 2 cut(s) 415, 426
Hpy8I GTNNAC 3 cut(s) 14, 135, 610
Hpy99I CGWCG 1 cut(s) 611
HpyAV CCTTC 6 cut(s) 30, 115, 123, 186, 225, 421
HpyCH4III ACNGT 2 cut(s) 275, 607
HpyCH4V TGCA 4 cut(s) 77, 103, 244, 278
HpyF10VI GCNNNNNNNGC 1 cut(s) 100
HpyF3I CTNAG 4 cut(s) 90, 138, 414, 523
Hsp92II CATG 5 cut(s) 103, 294, 332, 347, 554
KspI CCGCGG 1 cut(s) 404
Kzo9I GATC 1 cut(s) 582
LpnPI CCDG 6 cut(s) 155, 174, 470, 480, 556, 583
MaeI CTAG 1 cut(s) 95
MaeIII GTNAC 1 cut(s) 185
MalI GATC 1 cut(s) 584
MboI GATC 1 cut(s) 582
MboII GAAGA 3 cut(s) 75, 443, 518
MfeI CAATTG 1 cut(s) 279
MflI RGATCY 1 cut(s) 582
MluCI AATT 4 cut(s) 53, 220, 279, 594
MmeI TCCRAC 2 cut(s) 313, 539
MnlI CCTC 3 cut(s) 75, 133, 495
Mph1103I ATGCAT 1 cut(s) 79
MroXI GAANNNNTTC 1 cut(s) 510
MseI TTAA 4 cut(s) 204, 356, 447, 489
MspA1I CMGCKG 1 cut(s) 403
MspI CCGG 1 cut(s) 457
MspR9I CCNGG 2 cut(s) 458, 571
MunI CAATTG 1 cut(s) 279
Mva1269I GAATGC 1 cut(s) 79
MvaI CCWGG 1 cut(s) 571
MvnI CGCG 1 cut(s) 403
MwoI GCNNNNNNNGC 1 cut(s) 100
NciI CCSGG 1 cut(s) 458
NcoI CCATGG 1 cut(s) 290
NdeII GATC 1 cut(s) 582
NlaIII CATG 5 cut(s) 103, 294, 332, 347, 554
NlaIV GGNNCC 1 cut(s) 174
NsiI ATGCAT 1 cut(s) 79
NspI RCATGY 2 cut(s) 103, 554
PctI GAATGC 1 cut(s) 79
PdmI GAANNNNTTC 1 cut(s) 510
PfeI GAWTC 3 cut(s) 61, 325, 461
Psp6I CCWGG 1 cut(s) 569
PspGI CCWGG 1 cut(s) 569
PspN4I GGNNCC 1 cut(s) 174
PstNI CAGNNNCTG 1 cut(s) 424
PsuI RGATCY 1 cut(s) 582
RsaI GTAC 3 cut(s) 320, 455, 600
RsaNI GTAC 3 cut(s) 319, 454, 599
SacII CCGCGG 1 cut(s) 404
SalI GTCGAC 1 cut(s) 608
SaqAI TTAA 4 cut(s) 204, 356, 447, 489
Sau3AI GATC 1 cut(s) 582
ScaI AGTACT 1 cut(s) 320
ScrFI CCNGG 2 cut(s) 458, 571
SetI ASST 8 cut(s) 13, 96, 134, 217, 343, 447, 529, 623
Sfr303I CCGCGG 1 cut(s) 404
SgrBI CCGCGG 1 cut(s) 404
Sse9I AATT 4 cut(s) 53, 220, 279, 594
SsiI CCGC 2 cut(s) 401, 403
SspI AATATT 1 cut(s) 202
SspMI CTAG 1 cut(s) 95
StyD4I CCNGG 2 cut(s) 456, 569
StyI CCWWGG 3 cut(s) 41, 290, 391
TaaI ACNGT 2 cut(s) 275, 607
TaqI TCGA 1 cut(s) 609
TasI AATT 4 cut(s) 53, 220, 279, 594
TatI WGTACW 2 cut(s) 318, 598
TfiI GAWTC 3 cut(s) 61, 325, 461
Tru1I TTAA 4 cut(s) 204, 356, 447, 489
Tru9I TTAA 4 cut(s) 204, 356, 447, 489
TscAI CASTG 2 cut(s) 280, 632
TspDTI ATGAA 4 cut(s) 17, 168, 168, 554
TspGWI ACGGA 3 cut(s) 85, 397, 606
TspRI CASTG 2 cut(s) 280, 632
XceI RCATGY 2 cut(s) 103, 554
XmiI GTMKAC 2 cut(s) 134, 609
XmnI GAANNNNTTC 1 cut(s) 510
XspI CTAG 1 cut(s) 95
ZrmI AGTACT 1 cut(s) 320
Zsp2I ATGCAT 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.