MD13G1171000.v1.1
MYB Family

Protein ALWAYS EARLY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
N/A
Physical Location & Seq
Reverse (-)
13917927 .. 13918668
742 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1171000.v1.1.491

Sequence Viewer

Length: 462 bp
ATGATCTTCGCGTGTATGTTAATGCCATTGATGTGCTTGGAATCTGTTTCAGGAATTAGGCCTCATGCTGTTAAAAAAAGAACTCCTCGAGTCCCTGTTGCATATTCTAGTGATAAGGATAACAGTAGAAAGTATATTTCACCAGCCAGGCTAGGTTTAAAACCCAGTGCAGACACTAAAAACGATGATGTTGCTCATGAGATAGCATTGGCATTGACTGAGGCCTCACATAGAGGTGATTCTCCCTTGGTTTCTTGGAAATCTAAGAGAAAAGCCAAAGGCACACCACCAACTGTTACGAATCGTGAAATGATGTGTGCAGAGCCGGAAATGACTACAACCAAGCGCCGTGCTAGTGTAATGGATGAAGGTGGTTATGAATTGAGCTTTGGAAGCACAGAACCTGACAATGAATACTTTGATAGAGATCAAAGGTATGCAATGGGAAAAGATACCCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04218 map04218
Pfam Domains
Protein Families
DIRP Myb_DNA-binding

Protein Analysis

154

Amino Acids

17.07

Weight (kDa)

8.76

Isoelectric Point (pI)

45.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 11
AjnI CCWGG 1 cut(s) 146
AjuI GAANNNNNNNTTGG 2 cut(s) 372, 404
AluBI AGCT 1 cut(s) 387
AluI AGCT 1 cut(s) 387
AlwNI CAGNNNCTG 1 cut(s) 404
Ama87I CYCGRG 1 cut(s) 87
AoxI GGCC 2 cut(s) 59, 222
AspLEI GCGC 1 cut(s) 348
AsuHPI GGTGA 2 cut(s) 132, 248
AvaI CYCGRG 1 cut(s) 87
BceAI ACGGC 1 cut(s) 333
BcgI CGANNNNNNTGC 2 cut(s) 173, 207
BciT130I CCWGG 1 cut(s) 148
BfaI CTAG 3 cut(s) 108, 152, 354
BfoI RGCGCY 1 cut(s) 349
Bme1390I CCNGG 1 cut(s) 148
BmeT110I CYCGRG 1 cut(s) 87
BmrFI CCNGG 1 cut(s) 148
BmrI ACTGGG 1 cut(s) 159
BmuI ACTGGG 1 cut(s) 159
BsaBI GATNNNNATC 1 cut(s) 426
BsaJI CCNNGG 1 cut(s) 246
Bse1I ACTGG 1 cut(s) 165
Bse3DI GCAATG 1 cut(s) 447
Bse8I GATNNNNATC 1 cut(s) 426
BseBI CCWGG 1 cut(s) 148
BseDI CCNNGG 1 cut(s) 246
BseGI GGATG 1 cut(s) 370
BseJI GATNNNNATC 1 cut(s) 426
BseMI GCAATG 1 cut(s) 447
BseMII CTCAG 1 cut(s) 210
BseNI ACTGG 1 cut(s) 165
BseRI GAGGAG 1 cut(s) 75
BsgI GTGCAG 2 cut(s) 189, 339
Bsh1236I CGCG 1 cut(s) 11
BshFI GGCC 2 cut(s) 61, 224
BsiHKCI CYCGRG 1 cut(s) 87
BsiSI CCGG 1 cut(s) 326
BslFI GGGAC 1 cut(s) 77
BsmFI GGGAC 1 cut(s) 77
BsnI GGCC 2 cut(s) 61, 224
BsoBI CYCGRG 1 cut(s) 87
Bsp143I GATC 2 cut(s) 3, 427
BspANI GGCC 2 cut(s) 61, 224
BspCNI CTCAG 1 cut(s) 211
BspFNI CGCG 1 cut(s) 11
BspHI TCATGA 1 cut(s) 196
BsrDI GCAATG 1 cut(s) 447
BsrI ACTGG 1 cut(s) 165
BssECI CCNNGG 1 cut(s) 246
BssMI GATC 2 cut(s) 3, 427
BssT1I CCWWGG 1 cut(s) 246
Bst2UI CCWGG 1 cut(s) 148
Bst4CI ACNGT 2 cut(s) 125, 295
BstDEI CTNAG 2 cut(s) 219, 264
BstF5I GGATG 1 cut(s) 370
BstFNI CGCG 1 cut(s) 11
BstH2I RGCGCY 1 cut(s) 349
BstHHI GCGC 1 cut(s) 348
BstKTI GATC 2 cut(s) 6, 430
BstMBI GATC 2 cut(s) 3, 427
BstMWI GCNNNNNNNGC 1 cut(s) 393
BstNI CCWGG 1 cut(s) 148
BstSCI CCNGG 1 cut(s) 146
BstUI CGCG 1 cut(s) 11
BsuRI GGCC 2 cut(s) 61, 224
BtsCI GGATG 1 cut(s) 370
BtsIMutI CAGTG 1 cut(s) 172
CaiI CAGNNNCTG 1 cut(s) 404
CciI TCATGA 1 cut(s) 196
CfoI GCGC 1 cut(s) 348
CviAII CATG 2 cut(s) 65, 197
CviJI RGCY 7 cut(s) 61, 146, 151, 224, 275, 325, 387
CviKI_1 RGCY 7 cut(s) 61, 146, 151, 224, 275, 325, 387
DdeI CTNAG 2 cut(s) 219, 264
DpnI GATC 2 cut(s) 5, 429
DpnII GATC 2 cut(s) 3, 427
DraI TTTAAA 1 cut(s) 159
Eco130I CCWWGG 1 cut(s) 246
Eco147I AGGCCT 2 cut(s) 61, 224
Eco88I CYCGRG 1 cut(s) 87
EcoRII CCWGG 1 cut(s) 146
EcoT14I CCWWGG 1 cut(s) 246
ErhI CCWWGG 1 cut(s) 246
FaeI CATG 2 cut(s) 68, 200
FaiI YATR 8 cut(s) 17, 66, 103, 135, 198, 231, 378, 438
FaqI GGGAC 1 cut(s) 77
FatI CATG 2 cut(s) 64, 196
FokI GGATG 1 cut(s) 377
FspBI CTAG 3 cut(s) 108, 152, 354
GlaI GCGC 1 cut(s) 347
HaeII RGCGCY 1 cut(s) 349
HaeIII GGCC 2 cut(s) 61, 224
HapII CCGG 1 cut(s) 326
HhaI GCGC 1 cut(s) 348
Hin1II CATG 2 cut(s) 68, 200
Hin6I GCGC 1 cut(s) 346
HinP1I GCGC 1 cut(s) 346
HinfI GANTC 4 cut(s) 41, 90, 239, 301
HpaII CCGG 1 cut(s) 326
HphI GGTGA 2 cut(s) 132, 248
Hpy188III TCNNGA 3 cut(s) 51, 197, 305
HpyAV CCTTC 1 cut(s) 362
HpyCH4III ACNGT 2 cut(s) 125, 295
HpyCH4V TGCA 4 cut(s) 101, 170, 320, 440
HpyF10VI GCNNNNNNNGC 1 cut(s) 393
HpyF3I CTNAG 2 cut(s) 219, 264
Hsp92II CATG 2 cut(s) 68, 200
HspAI GCGC 1 cut(s) 346
Kzo9I GATC 2 cut(s) 3, 427
LpnPI CCDG 8 cut(s) 36, 108, 133, 156, 160, 178, 339, 417
MaeI CTAG 3 cut(s) 108, 152, 354
MaeIII GTNAC 1 cut(s) 295
MalI GATC 2 cut(s) 5, 429
MboI GATC 2 cut(s) 3, 427
MluCI AATT 2 cut(s) 54, 380
MlyI GAGTC 1 cut(s) 99
MnlI CCTC 5 cut(s) 72, 96, 214, 227, 235
MseI TTAA 3 cut(s) 20, 72, 158
MslI CAYNNNNRTG 2 cut(s) 31, 234
MspI CCGG 1 cut(s) 326
MspR9I CCNGG 1 cut(s) 148
MvaI CCWGG 1 cut(s) 148
MvnI CGCG 1 cut(s) 11
MwoI GCNNNNNNNGC 1 cut(s) 393
NdeII GATC 2 cut(s) 3, 427
NlaIII CATG 2 cut(s) 68, 200
PaeR7I CTCGAG 1 cut(s) 87
PagI TCATGA 1 cut(s) 196
PceI AGGCCT 2 cut(s) 61, 224
PfeI GAWTC 3 cut(s) 41, 239, 301
PleI GAGTC 1 cut(s) 98
PpsI GAGTC 1 cut(s) 98
Psp6I CCWGG 1 cut(s) 146
PspGI CCWGG 1 cut(s) 146
PspXI VCTCGAGB 1 cut(s) 87
PstNI CAGNNNCTG 1 cut(s) 404
RseI CAYNNNNRTG 2 cut(s) 31, 234
SaqAI TTAA 3 cut(s) 20, 72, 158
Sau3AI GATC 2 cut(s) 3, 427
SchI GAGTC 1 cut(s) 99
ScrFI CCNGG 1 cut(s) 148
SetI ASST 6 cut(s) 157, 238, 373, 389, 406, 437
Sfr274I CTCGAG 1 cut(s) 87
SlaI CTCGAG 1 cut(s) 87
SmiMI CAYNNNNRTG 2 cut(s) 31, 234
SmlI CTYRAG 1 cut(s) 87
SmoI CTYRAG 1 cut(s) 87
Sse9I AATT 2 cut(s) 54, 380
SseBI AGGCCT 2 cut(s) 61, 224
SspMI CTAG 3 cut(s) 108, 152, 354
StuI AGGCCT 2 cut(s) 61, 224
StyD4I CCNGG 1 cut(s) 146
StyI CCWWGG 1 cut(s) 246
TaaI ACNGT 2 cut(s) 125, 295
TaqI TCGA 1 cut(s) 88
TasI AATT 2 cut(s) 54, 380
TfiI GAWTC 3 cut(s) 41, 239, 301
Tru1I TTAA 3 cut(s) 20, 72, 158
Tru9I TTAA 3 cut(s) 20, 72, 158
TscAI CASTG 1 cut(s) 172
TspDTI ATGAA 3 cut(s) 381, 393, 426
TspRI CASTG 1 cut(s) 172
XhoI CTCGAG 1 cut(s) 87
XspI CTAG 3 cut(s) 108, 152, 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.