MD14G1009400.v1.1
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
N/A
Physical Location & Seq
Forward (+)
944466 .. 947133
2668 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1009400.v1.1.491

Sequence Viewer

Length: 1794 bp
ATGCACCACCAATTGTGTCCTCATACAAAGAGAAAATCCGTCCTTTTGCTCGACGCAATTGACAAACTTTGTAACTTAAGGATAATGGAAGAAGGTATTCCGCTCTCCACAATTGTAGTGGTTGGTGATCAATCTTCCGGTAAATCAAGTGTGCTGGAATCGTTGGCCGGCATTAGCCTCCTTAGGGGTCAAGGTATCTGTACAAGGGTACCTCTTATAATGAGGTTTCAACACAGTCCTCAGCCTGAGCTTTCTTTGGAGTGTAACAGCAAAGTTGATCGTACCGACGAAAACAATATTTCTGATGATATTGTCAAAGCCACTAATTCTATTGCAGGAGGAGGGATATCTAATACCCCATTGACATTGCTGGTTAAAAAGAACGGCGTTCCTGATTTGACGATGGTCGATCTTCCTGGGATCACTAGAGTCCCAGTTCAGGGTCAGCCTGAAAATATTTATGATCAAATCAAGGATATGATCATGCAATATATCAAGCCTGAGGAGAGTATAATTCTTAGACCTAGTTTGGGAGCTTATTTTGGAAGCTGCTGTGAGAATAAGCTTAAATCAAAGAAAAAAGCTAAAGCTGCTATTTGTAGCTTTGGAAAACTGGCTTTTTTTCAAAGCACACGGAGCTACAATGCTTCTTTAATGAAAAGACCCAATACTAGACTGCTTTTTTTTCCAAAAGCACTTTTACAAAAAAGTTTACCAAACACTCTGCTGATTTATTTCACAGCCGCTTATTCTCACAGCATAGCCGCTTATTCTCACAGCAGCTTTTTTTCAAAGCACAGCAATACCAAACCAGCCCTTAATGTCCTGTCTGCTAGTGTTGATTTTGCCACTTGCGAATCGATTAGGATGTCACAGAGCGTGGACAAGACCGGTGAAAGGACTCTGGCGCTAGTGATGAAGGTCGATAAGGCACCCGAAGGATTGCTTGAGAAGGTGACAGGAGACGATGTCAATATTGGGCTAGGTTATGTCTGCGTGAGGAACCGCATTGGTGATGAAACATACGAGGAGGCAGGGGCTATTACTCAGGATTTATTTCAATCTCATCCTCTTCTATCTAATATCGAAAAATCTATGGTTATTCCAGTTTTAGCACAAAGGTTGGTGCAGATTCAGGCTATTGGCATAGCGAGAAATTTACCAGAGATAGTAAAGAAAATCAACGAGAAGTTGAATTCCAGCCTCGCAGAGCTCAACAAGATGCCTAAGAGTCTGACATCCGTTGCTGAGGCTATGACAGCTTTCATGCAGATCATTGGATCGGCGAAAAAATCACTCAGGAAATTTCTTCTGAGAGGCGAATTTGAAGAGTATTCTGATGATCGCCACATGCATTGCACTGTGCGAATGAGCAAAGTGAACGGAATTTCAAGCATTCCTCTTGGGTTTGTGGAGAAGATCTGGAGTTATATAGAGGATGTTGTTGTTTCAGTGTTAATGCGACATTTAGAAAATTATTATAAGCTTCAGCTGTCCGCCAAACGAGTAGGCCAGAATCTTATGTCGAAGATGAAAGAAAGGTCGATTACTTGGATGACGGAGATAGTTGAAATTGAGAAAGTTACTGATTATACATGTAATCCGGAGTACCTCTCTGAATGGAATAGATTGATAGGTCAGCATGACGCTTTCGTTAACGGAGTCTTAAAAGACAAAAACCGCCCAGCTAAGATAACTATAGAGGGCATAGGGGAGGTTGAAGTTGAAGCTCTTAGGAAGAATCTGAACACTCTTTCGGCGGCGTATAACCTGAAAATGCGGATGATTGTGTAG

Protein Analysis

598

Amino Acids

66.57

Weight (kDa)

9.04

Isoelectric Point (pI)

40.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dynamin_N PF00350 38 - 173 8.3e-28 Dynamin family
Dynamin_M PF01031 315 - 459 3.2e-27 Dynamin central region
Dynamin_M PF01031 459 - 543 1.6e-12 Dynamin central region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 218, 1482
Acc65I GGTACC 1 cut(s) 208
AccB1I GGYRCC 2 cut(s) 208, 931
AccBSI CCGCTC 1 cut(s) 103
AccIII TCCGGA 1 cut(s) 1603
AciI CCGC 8 cut(s) 101, 744, 765, 1006, 1497, 1681, 1760, 1780
AclWI GGATC 2 cut(s) 428, 1288
AcoI YGGCCR 1 cut(s) 165
AcsI RAATTY 5 cut(s) 1156, 1195, 1304, 1322, 1386
AcuI CTGAAG 1 cut(s) 1472
AfaI GTAC 4 cut(s) 202, 210, 283, 1610
AfiI CCNNNNNNNGG 5 cut(s) 184, 439, 440, 530, 897
AflII CTTAAG 1 cut(s) 76
AflIII ACRYGT 1 cut(s) 1595
AgeI ACCGGT 1 cut(s) 890
AjnI CCWGG 1 cut(s) 415
Alw21I GWGCWC 1 cut(s) 1215
Alw26I GTCTC 1 cut(s) 957
AlwI GGATC 2 cut(s) 428, 1288
Aor13HI TCCGGA 1 cut(s) 1603
AoxI GGCC 2 cut(s) 165, 1510
ApeKI GCWGC 3 cut(s) 549, 590, 780
ApoI RAATTY 5 cut(s) 1156, 1195, 1304, 1322, 1386
AsiGI ACCGGT 1 cut(s) 890
Asp700I GAANNNNTTC 1 cut(s) 96
Asp718I GGTACC 1 cut(s) 208
AspLEI GCGC 1 cut(s) 910
AsuHPI GGTGA 4 cut(s) 137, 905, 967, 1025
AxyI CCTNAGG 2 cut(s) 182, 501
BaeI ACNNNNGTAYC 2 cut(s) 192, 225
BanI GGYRCC 2 cut(s) 208, 931
BanII GRGCYC 1 cut(s) 1215
Bbv12I GWGCWC 1 cut(s) 1215
BbvCI CCTCAGC 2 cut(s) 240, 1248
BbvI GCAGC 3 cut(s) 536, 577, 792
BccI CCATC 1 cut(s) 397
BceAI ACGGC 1 cut(s) 400
BciT130I CCWGG 1 cut(s) 417
BclI TGATCA 3 cut(s) 127, 463, 480
BcoDI GTCTC 1 cut(s) 957
BfaI CTAG 6 cut(s) 426, 525, 672, 834, 911, 983
BfmI CTRYAG 1 cut(s) 1698
BfoI RGCGCY 1 cut(s) 911
BfrI CTTAAG 1 cut(s) 76
BglII AGATCT 1 cut(s) 1419
BisI GCNGC 6 cut(s) 550, 591, 744, 765, 781, 1761
BlsI GCNGC 6 cut(s) 551, 592, 745, 766, 782, 1762
Bme1390I CCNGG 1 cut(s) 417
BmiI GGNNCC 3 cut(s) 210, 933, 1004
BmrFI CCNGG 1 cut(s) 417
BmrI ACTGGG 1 cut(s) 428
BmsI GCATC 1 cut(s) 1212
BmuI ACTGGG 1 cut(s) 428
BoxI GACNNNNGTC 1 cut(s) 404
BplI GAGNNNNNCTC 2 cut(s) 1598, 1630
BpmI CTGGAG 1 cut(s) 1444
Bpu10I CCTNAGC 3 cut(s) 240, 246, 1248
BpuEI CTTGAG 1 cut(s) 968
Bsa29I ATCGAT 1 cut(s) 860
BsaJI CCNNGG 1 cut(s) 416
BsaWI WCCGGW 3 cut(s) 137, 890, 1603
BsaXI ACNNNNNCTCC 2 cut(s) 954, 984
Bsc4I CCNNNNNNNGG 5 cut(s) 184, 439, 440, 530, 897
Bse118I RCCGGY 2 cut(s) 167, 890
Bse1I ACTGG 3 cut(s) 434, 618, 1106
Bse21I CCTNAGG 2 cut(s) 182, 501
Bse3DI GCAATG 2 cut(s) 365, 1354
BseAI TCCGGA 1 cut(s) 1603
BseBI CCWGG 1 cut(s) 417
BseCI ATCGAT 1 cut(s) 860
BseDI CCNNGG 1 cut(s) 416
BseGI GGATG 6 cut(s) 873, 1066, 1238, 1444, 1560, 1788
BseLI CCNNNNNNNGG 5 cut(s) 184, 439, 440, 530, 897
BseMI GCAATG 2 cut(s) 365, 1354
BseMII CTCAG 7 cut(s) 237, 254, 492, 1061, 1239, 1304, 1312
BseNI ACTGG 3 cut(s) 434, 618, 1106
BseRI GAGGAG 3 cut(s) 354, 518, 1043
BseXI GCAGC 3 cut(s) 536, 577, 792
BseYI CCCAGC 1 cut(s) 1684
BsgI GTGCAG 1 cut(s) 1148
BshFI GGCC 2 cut(s) 167, 1512
BshNI GGYRCC 2 cut(s) 208, 931
BshTI ACCGGT 1 cut(s) 890
BshVI ATCGAT 1 cut(s) 860
BsiHKAI GWGCWC 1 cut(s) 1215
BsiSI CCGG 4 cut(s) 138, 168, 891, 1604
BslFI GGGAC 1 cut(s) 416
BslI CCNNNNNNNGG 5 cut(s) 184, 439, 440, 530, 897
BsmAI GTCTC 1 cut(s) 957
BsmBI CGTCTC 1 cut(s) 957
BsmFI GGGAC 1 cut(s) 416
BsmI GAATGC 1 cut(s) 1395
BsnI GGCC 2 cut(s) 167, 1512
Bsp1286I GDGCHC 1 cut(s) 1215
Bsp13I TCCGGA 1 cut(s) 1603
Bsp1407I TGTACA 1 cut(s) 200
BspACI CCGC 8 cut(s) 101, 744, 765, 1006, 1497, 1681, 1760, 1780
BspANI GGCC 2 cut(s) 167, 1512
BspCNI CTCAG 7 cut(s) 238, 253, 493, 1060, 1240, 1305, 1311
BspDI ATCGAT 1 cut(s) 860
BspEI TCCGGA 1 cut(s) 1603
BspLI GGNNCC 3 cut(s) 210, 933, 1004
BspPI GGATC 2 cut(s) 428, 1288
BspT107I GGYRCC 2 cut(s) 208, 931
BspTI CTTAAG 1 cut(s) 76
BsrBI CCGCTC 1 cut(s) 103
BsrDI GCAATG 2 cut(s) 365, 1354
BsrFI RCCGGY 2 cut(s) 167, 890
BsrGI TGTACA 1 cut(s) 200
BsrI ACTGG 3 cut(s) 434, 618, 1106
BssAI RCCGGY 2 cut(s) 167, 890
BssECI CCNNGG 1 cut(s) 416
Bst2UI CCWGG 1 cut(s) 417
Bst4CI ACNGT 2 cut(s) 236, 1363
Bst6I CTCTTC 2 cut(s) 1077, 1323
BstAFI CTTAAG 1 cut(s) 76
BstAUI TGTACA 1 cut(s) 200
BstC8I GCNNGC 1 cut(s) 169
BstF5I GGATG 6 cut(s) 873, 1066, 1238, 1444, 1560, 1788
BstH2I RGCGCY 1 cut(s) 911
BstHHI GCGC 1 cut(s) 910
BstMAI GTCTC 1 cut(s) 957
BstMWI GCNNNNNNNGC 3 cut(s) 590, 636, 1259
BstNI CCWGG 1 cut(s) 417
BstNSI RCATGY 2 cut(s) 1354, 1599
BstPAI GACNNNNGTC 1 cut(s) 404
BstSCI CCNGG 1 cut(s) 415
BstSFI CTRYAG 1 cut(s) 1698
BstV1I GCAGC 3 cut(s) 536, 577, 792
BstX2I RGATCY 1 cut(s) 1419
BstYI RGATCY 1 cut(s) 1419
Bsu15I ATCGAT 1 cut(s) 860
Bsu36I CCTNAGG 2 cut(s) 182, 501
BsuRI GGCC 2 cut(s) 167, 1512
BsuTUI ATCGAT 1 cut(s) 860
BtsCI GGATG 6 cut(s) 873, 1066, 1238, 1444, 1560, 1788
BtsIMutI CAGTG 2 cut(s) 1359, 1458
Cac8I GCNNGC 1 cut(s) 169
CfoI GCGC 1 cut(s) 910
Cfr10I RCCGGY 2 cut(s) 167, 890
ClaI ATCGAT 1 cut(s) 860
CseI GACGC 2 cut(s) 62, 1655
Csp6I GTAC 4 cut(s) 201, 209, 282, 1609
CspAI ACCGGT 1 cut(s) 890
CspCI CAANNNNNGTGG 4 cut(s) 99, 134, 1337, 1372
CviAII CATG 5 cut(s) 484, 1267, 1351, 1596, 1643
CviQI GTAC 4 cut(s) 201, 209, 282, 1609
EaeI YGGCCR 1 cut(s) 165
Eam1104I CTCTTC 2 cut(s) 1077, 1323
EarI CTCTTC 2 cut(s) 1077, 1323
EciI GGCGGA 1 cut(s) 1486
Ecl136II GAGCTC 1 cut(s) 1213
Eco24I GRGCYC 1 cut(s) 1215
Eco32I GATATC 1 cut(s) 348
Eco53kI GAGCTC 1 cut(s) 1213
Eco57I CTGAAG 1 cut(s) 1472
Eco81I CCTNAGG 2 cut(s) 182, 501
EcoICRI GAGCTC 1 cut(s) 1213
EcoRI GAATTC 1 cut(s) 1195
EcoRII CCWGG 1 cut(s) 415
EcoRV GATATC 1 cut(s) 348
EcoT22I ATGCAT 1 cut(s) 1356
EcoT38I GRGCYC 1 cut(s) 1215
Esp3I CGTCTC 1 cut(s) 957
FaeI CATG 5 cut(s) 487, 1270, 1354, 1599, 1646
FalI AAGNNNNNCTT 2 cut(s) 930, 962
FaqI GGGAC 1 cut(s) 416
FatI CATG 5 cut(s) 483, 1266, 1350, 1595, 1642
FbaI TGATCA 3 cut(s) 127, 463, 480
Fnu4HI GCNGC 6 cut(s) 550, 591, 744, 765, 781, 1761
FokI GGATG 5 cut(s) 880, 1053, 1225, 1451, 1567
FriOI GRGCYC 1 cut(s) 1215
Fsp4HI GCNGC 6 cut(s) 550, 591, 744, 765, 781, 1761
FspBI CTAG 6 cut(s) 426, 525, 672, 834, 911, 983
GlaI GCGC 1 cut(s) 909
GluI GCNGC 6 cut(s) 550, 591, 744, 765, 781, 1761
GsaI CCCAGC 1 cut(s) 1688
GsuI CTGGAG 1 cut(s) 1444
HaeII RGCGCY 1 cut(s) 911
HaeIII GGCC 2 cut(s) 167, 1512
HapII CCGG 4 cut(s) 138, 168, 891, 1604
HgaI GACGC 2 cut(s) 62, 1655
HhaI GCGC 1 cut(s) 910
Hin1II CATG 5 cut(s) 487, 1270, 1354, 1599, 1646
Hin6I GCGC 1 cut(s) 908
HinP1I GCGC 1 cut(s) 908
HincII GTYRAC 1 cut(s) 1657
HindII GTYRAC 1 cut(s) 1657
HindIII AAGCTT 2 cut(s) 563, 1484
HinfI GANTC 9 cut(s) 158, 429, 857, 901, 1132, 1231, 1516, 1662, 1741
HpaI GTTAAC 1 cut(s) 1657
HpaII CCGG 4 cut(s) 138, 168, 891, 1604
HphI GGTGA 4 cut(s) 137, 905, 967, 1025
Hpy166II GTNNAC 4 cut(s) 713, 883, 1381, 1657
Hpy188I TCNGA 6 cut(s) 304, 1236, 1314, 1339, 1618, 1746
Hpy188III TCNNGA 5 cut(s) 392, 1049, 1300, 1423, 1604
Hpy8I GTNNAC 4 cut(s) 713, 883, 1381, 1657
Hpy99I CGWCG 2 cut(s) 56, 290
HpyAV CCTTC 4 cut(s) 86, 913, 932, 946
HpyCH4III ACNGT 2 cut(s) 236, 1363
HpyCH4V TGCA 7 cut(s) 4, 335, 487, 1129, 1270, 1354, 1359
HpyF10VI GCNNNNNNNGC 3 cut(s) 590, 636, 1259
Hsp92II CATG 5 cut(s) 487, 1270, 1354, 1599, 1646
HspAI GCGC 1 cut(s) 908
Kpn2I TCCGGA 1 cut(s) 1603
KpnI GGTACC 1 cut(s) 212
KroI GCCGGC 1 cut(s) 167
KroNI GCCGGC 1 cut(s) 169
Ksp22I TGATCA 3 cut(s) 127, 463, 480
KspAI GTTAAC 1 cut(s) 1657
LmnI GCTCC 2 cut(s) 533, 636
Lsp1109I GCAGC 3 cut(s) 536, 577, 792
LweI GCATC 1 cut(s) 1212
MaeI CTAG 6 cut(s) 426, 525, 672, 834, 911, 983
MaeIII GTNAC 5 cut(s) 71, 263, 870, 955, 1582
MbiI CCGCTC 1 cut(s) 103
MboII GAAGA 9 cut(s) 101, 126, 404, 1064, 1301, 1340, 1429, 1540, 1750
MfeI CAATTG 3 cut(s) 11, 57, 111
MflI RGATCY 1 cut(s) 1419
MhlI GDGCHC 1 cut(s) 1215
MlyI GAGTC 4 cut(s) 438, 895, 1240, 1671
Mph1103I ATGCAT 1 cut(s) 1356
MroI TCCGGA 1 cut(s) 1603
MroNI GCCGGC 1 cut(s) 167
MroXI GAANNNNTTC 1 cut(s) 96
MseI TTAA 8 cut(s) 77, 375, 567, 653, 819, 1457, 1656, 1667
MspA1I CMGCKG 1 cut(s) 1492
MspCI CTTAAG 1 cut(s) 76
MspI CCGG 4 cut(s) 138, 168, 891, 1604
MspR9I CCNGG 1 cut(s) 417
MunI CAATTG 3 cut(s) 11, 57, 111
Mva1269I GAATGC 1 cut(s) 1395
MvaI CCWGG 1 cut(s) 417
MwoI GCNNNNNNNGC 3 cut(s) 590, 636, 1259
NaeI GCCGGC 1 cut(s) 169
NgoMIV GCCGGC 1 cut(s) 167
NlaIII CATG 5 cut(s) 487, 1270, 1354, 1599, 1646
NlaIV GGNNCC 3 cut(s) 210, 933, 1004
NmuCI GTSAC 2 cut(s) 870, 955
NsiI ATGCAT 1 cut(s) 1356
NspI RCATGY 2 cut(s) 1354, 1599
PciI ACATGT 1 cut(s) 1595
PctI GAATGC 1 cut(s) 1395
PdiI GCCGGC 1 cut(s) 169
PdmI GAANNNNTTC 1 cut(s) 96
PfeI GAWTC 5 cut(s) 158, 857, 1132, 1516, 1741
PflFI GACNNNGTC 1 cut(s) 968
PinAI ACCGGT 1 cut(s) 890
PkrI GCNGC 6 cut(s) 551, 592, 745, 766, 782, 1762
PleI GAGTC 4 cut(s) 437, 895, 1239, 1670
PpsI GAGTC 4 cut(s) 437, 895, 1239, 1670
PscI ACATGT 1 cut(s) 1595
PshAI GACNNNNGTC 1 cut(s) 404
PsiI TTATAA 2 cut(s) 218, 1482
Psp124BI GAGCTC 1 cut(s) 1215
Psp6I CCWGG 1 cut(s) 415
PspFI CCCAGC 1 cut(s) 1684
PspGI CCWGG 1 cut(s) 415
PspN4I GGNNCC 3 cut(s) 210, 933, 1004
PsuI RGATCY 1 cut(s) 1419
PsyI GACNNNGTC 1 cut(s) 968
PvuII CAGCTG 1 cut(s) 1492
RsaI GTAC 4 cut(s) 202, 210, 283, 1610
RsaNI GTAC 4 cut(s) 201, 209, 282, 1609
SacI GAGCTC 1 cut(s) 1215
SaqAI TTAA 8 cut(s) 77, 375, 567, 653, 819, 1457, 1656, 1667
SatI GCNGC 6 cut(s) 550, 591, 744, 765, 781, 1761
SchI GAGTC 4 cut(s) 438, 895, 1240, 1671
ScrFI CCNGG 1 cut(s) 417
SduI GDGCHC 1 cut(s) 1215
SfaNI GCATC 1 cut(s) 1212
SfcI CTRYAG 1 cut(s) 1698
SmlI CTYRAG 2 cut(s) 76, 947
SmoI CTYRAG 2 cut(s) 76, 947
SsiI CCGC 8 cut(s) 101, 744, 765, 1006, 1497, 1681, 1760, 1780
SspI AATATT 3 cut(s) 298, 457, 976
SspMI CTAG 6 cut(s) 426, 525, 672, 834, 911, 983
SstI GAGCTC 1 cut(s) 1215
StyD4I CCNGG 1 cut(s) 415
TaaI ACNGT 2 cut(s) 236, 1363
TaqI TCGA 7 cut(s) 51, 408, 860, 924, 1086, 1526, 1544
TatI WGTACW 1 cut(s) 200
TauI GCSGC 3 cut(s) 746, 767, 1763
TfiI GAWTC 5 cut(s) 158, 857, 1132, 1516, 1741
Tru1I TTAA 8 cut(s) 77, 375, 567, 653, 819, 1457, 1656, 1667
Tru9I TTAA 8 cut(s) 77, 375, 567, 653, 819, 1457, 1656, 1667
TscAI CASTG 2 cut(s) 1366, 1458
TseFI GTSAC 2 cut(s) 870, 955
TseI GCWGC 3 cut(s) 549, 590, 780
Tsp45I GTSAC 2 cut(s) 870, 955
TspDTI ATGAA 5 cut(s) 671, 932, 1032, 1255, 1547
TspGWI ACGGA 6 cut(s) 28, 649, 1231, 1398, 1574, 1674
TspRI CASTG 2 cut(s) 1366, 1458
Tth111I GACNNNGTC 1 cut(s) 968
Vha464I CTTAAG 1 cut(s) 76
XapI RAATTY 5 cut(s) 1156, 1195, 1304, 1322, 1386
XceI RCATGY 2 cut(s) 1354, 1599
XcmI CCANNNNNNNNNTGG 1 cut(s) 115
XmnI GAANNNNTTC 1 cut(s) 96
XspI CTAG 6 cut(s) 426, 525, 672, 834, 911, 983
Zsp2I ATGCAT 1 cut(s) 1356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.