Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

3470384 .. 3473388

Gene Structure 3005 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1050900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGCTTTGCGAAACGATGTGGTGCAGAGGGGTGCCGTGAAGCTATATCGTCCGATTAATTTCAGAACGTCATCGTTCAAGTCTCGGCTCCCTCCTCAATCTCCTGGATCAGCCCTGTGTCGGAGCAGCCCCGCGCTGTTTGGCTCCGCAACTTCCAAGGATGACGGAGATCAGTTTTTGATGGACTGGGAAGAGGACCTTGGACTGATGTTGAAGACCAAATTCTGCTCGAGTATGTCAGGGAGATGGGGGAAACTATCGAGGGAAACAGGTCTGAAGAGATATGGGAACCGTTGTAGGCTTAGGCGGTTGAATTATCAGAAGCCGGATATCAAGAGAGGCAACATTACAGAAGACGAAGAAGACCTGATTATCAGGCTCCACAAATTCTTAGGCAACAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009987 GO:0010026 GO:0010090 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0048316 GO:0048354 GO:0048359 GO:0048468 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

135

Amino Acids

15.4

Weight (kDa)

10.07

Isoelectric Point (pI)

58.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	32
AccII	CGCG	1 cut(s)	134
AciI	CCGC	3 cut(s)	132, 147, 307
AclWI	GGATC	1 cut(s)	115
AcsI	RAATTY	2 cut(s)	221, 386
AcuI	CTGAAG	1 cut(s)	296
AfiI	CCNNNNNNNGG	1 cut(s)	120
AgsI	TTSAA	3 cut(s)	79, 214, 313
AjnI	CCWGG	1 cut(s)	103
AjuI	GAANNNNNNNTTGG	2 cut(s)	183, 215
AluBI	AGCT	1 cut(s)	43
AluI	AGCT	1 cut(s)	43
Alw26I	GTCTC	1 cut(s)	87
AlwI	GGATC	1 cut(s)	115
Ama87I	CYCGRG	1 cut(s)	229
ApeKI	GCWGC	1 cut(s)	126
ApoI	RAATTY	2 cut(s)	221, 386
AseI	ATTAAT	1 cut(s)	57
AspLEI	GCGC	1 cut(s)	136
AspS9I	GGNCC	1 cut(s)	196
AvaI	CYCGRG	1 cut(s)	229
AvaII	GGWCC	1 cut(s)	196
BanI	GGYRCC	1 cut(s)	32
BbsI	GAAGAC	3 cut(s)	221, 360, 369
BbvI	GCAGC	1 cut(s)	138
BccI	CCATC	2 cut(s)	175, 240
BceAI	ACGGC	1 cut(s)	20
BciT130I	CCWGG	1 cut(s)	105
BcoDI	GTCTC	1 cut(s)	87
BisI	GCNGC	1 cut(s)	127
BlsI	GCNGC	1 cut(s)	128
Bme1390I	CCNGG	1 cut(s)	105
Bme18I	GGWCC	1 cut(s)	196
BmeT110I	CYCGRG	1 cut(s)	229
BmgT120I	GGNCC	1 cut(s)	196
BmiI	GGNNCC	5 cut(s)	34, 89, 145, 290, 380
BmrFI	CCNGG	1 cut(s)	105
BmrI	ACTGGG	1 cut(s)	196
BmuI	ACTGGG	1 cut(s)	196
BpiI	GAAGAC	3 cut(s)	221, 360, 369
Bpu10I	CCTNAGC	1 cut(s)	302
BsaJI	CCNNGG	2 cut(s)	156, 199
Bsc4I	CCNNNNNNNGG	1 cut(s)	120
Bse1I	ACTGG	1 cut(s)	191
BseBI	CCWGG	1 cut(s)	105
BseDI	CCNNGG	2 cut(s)	156, 199
BseGI	GGATG	1 cut(s)	166
BseLI	CCNNNNNNNGG	1 cut(s)	120
BseNI	ACTGG	1 cut(s)	191
BseRI	GAGGAG	1 cut(s)	84
BseXI	GCAGC	1 cut(s)	138
BsgI	GTGCAG	1 cut(s)	44
Bsh1236I	CGCG	1 cut(s)	134
BshNI	GGYRCC	1 cut(s)	32
BsiHKCI	CYCGRG	1 cut(s)	229
BsiSI	CCGG	1 cut(s)	326
BslI	CCNNNNNNNGG	1 cut(s)	120
BsmAI	GTCTC	1 cut(s)	87
BsoBI	CYCGRG	1 cut(s)	229
Bsp143I	GATC	2 cut(s)	107, 169
BspACI	CCGC	3 cut(s)	132, 147, 307
BspFNI	CGCG	1 cut(s)	134
BspLI	GGNNCC	5 cut(s)	34, 89, 145, 290, 380
BspPI	GGATC	1 cut(s)	115
BspT107I	GGYRCC	1 cut(s)	32
BsrI	ACTGG	1 cut(s)	191
BssECI	CCNNGG	2 cut(s)	156, 199
BssMI	GATC	2 cut(s)	107, 169
BssT1I	CCWWGG	2 cut(s)	156, 199
Bst2UI	CCWGG	1 cut(s)	105
Bst4CI	ACNGT	1 cut(s)	293
Bst6I	CTCTTC	2 cut(s)	186, 272
BstDEI	CTNAG	2 cut(s)	302, 391
BstF5I	GGATG	1 cut(s)	166
BstFNI	CGCG	1 cut(s)	134
BstHHI	GCGC	1 cut(s)	136
BstKTI	GATC	2 cut(s)	110, 172
BstMAI	GTCTC	1 cut(s)	87
BstMBI	GATC	2 cut(s)	107, 169
BstNI	CCWGG	1 cut(s)	105
BstSCI	CCNGG	1 cut(s)	103
BstUI	CGCG	1 cut(s)	134
BstV1I	GCAGC	1 cut(s)	138
BstV2I	GAAGAC	3 cut(s)	221, 360, 369
BtsCI	GGATG	1 cut(s)	166
CfoI	GCGC	1 cut(s)	136
Cfr13I	GGNCC	1 cut(s)	196
CviJI	RGCY	9 cut(s)	5, 43, 88, 113, 129, 144, 301, 325, 379
CviKI_1	RGCY	9 cut(s)	5, 43, 88, 113, 129, 144, 301, 325, 379
DdeI	CTNAG	2 cut(s)	302, 391
DpnI	GATC	2 cut(s)	109, 171
DpnII	GATC	2 cut(s)	107, 169
Eam1104I	CTCTTC	2 cut(s)	186, 272
EarI	CTCTTC	2 cut(s)	186, 272
Eco130I	CCWWGG	2 cut(s)	156, 199
Eco32I	GATATC	1 cut(s)	331
Eco47I	GGWCC	1 cut(s)	196
Eco57I	CTGAAG	1 cut(s)	296
Eco88I	CYCGRG	1 cut(s)	229
EcoO109I	RGGNCCY	1 cut(s)	196
EcoRII	CCWGG	1 cut(s)	103
EcoRV	GATATC	1 cut(s)	331
EcoT14I	CCWWGG	2 cut(s)	156, 199
ErhI	CCWWGG	2 cut(s)	156, 199
FaiI	YATR	3 cut(s)	46, 236, 285
FalI	AAGNNNNNCTT	2 cut(s)	183, 215
FauI	CCCGC	1 cut(s)	139
Fnu4HI	GCNGC	1 cut(s)	127
FokI	GGATG	1 cut(s)	173
Fsp4HI	GCNGC	1 cut(s)	127
GlaI	GCGC	1 cut(s)	135
GluI	GCNGC	1 cut(s)	127
HapII	CCGG	1 cut(s)	326
HhaI	GCGC	1 cut(s)	136
Hin6I	GCGC	1 cut(s)	134
HinP1I	GCGC	1 cut(s)	134
HpaII	CCGG	1 cut(s)	326
Hpy188I	TCNGA	5 cut(s)	54, 65, 123, 276, 321
Hpy188III	TCNNGA	1 cut(s)	334
HpyCH4III	ACNGT	1 cut(s)	293
HpyCH4IV	ACGT	1 cut(s)	68
HpyCH4V	TGCA	1 cut(s)	25
HpyF3I	CTNAG	2 cut(s)	302, 391
HpySE526I	ACGT	1 cut(s)	68
HspAI	GCGC	1 cut(s)	134
Kzo9I	GATC	2 cut(s)	107, 169
LmnI	GCTCC	4 cut(s)	93, 123, 149, 384
LpnPI	CCDG	9 cut(s)	90, 117, 128, 172, 225, 255, 339, 361, 380
Lsp1109I	GCAGC	1 cut(s)	138
MaeII	ACGT	1 cut(s)	68
MalI	GATC	2 cut(s)	109, 171
MboI	GATC	2 cut(s)	107, 169
MboII	GAAGA	6 cut(s)	203, 226, 289, 365, 371, 374
MluCI	AATT	4 cut(s)	58, 221, 313, 386
MmeI	TCCRAC	1 cut(s)	101
MnlI	CCTC	6 cut(s)	21, 102, 105, 187, 255, 332
MseI	TTAA	1 cut(s)	57
MspI	CCGG	1 cut(s)	326
MspR9I	CCNGG	1 cut(s)	105
MvaI	CCWGG	1 cut(s)	105
MvnI	CGCG	1 cut(s)	134
NdeII	GATC	2 cut(s)	107, 169
NlaIV	GGNNCC	5 cut(s)	34, 89, 145, 290, 380
NmeAIII	GCCGAG	1 cut(s)	64
PaeR7I	CTCGAG	1 cut(s)	229
PfoI	TCCNGGA	1 cut(s)	103
PkrI	GCNGC	1 cut(s)	128
PpuMI	RGGWCCY	1 cut(s)	196
PshBI	ATTAAT	1 cut(s)	57
Psp5II	RGGWCCY	1 cut(s)	196
Psp6I	CCWGG	1 cut(s)	103
PspGI	CCWGG	1 cut(s)	103
PspN4I	GGNNCC	5 cut(s)	34, 89, 145, 290, 380
PspPI	GGNCC	1 cut(s)	196
PspPPI	RGGWCCY	1 cut(s)	196
PspXI	VCTCGAGB	1 cut(s)	229
SaqAI	TTAA	1 cut(s)	57
SatI	GCNGC	1 cut(s)	127
Sau3AI	GATC	2 cut(s)	107, 169
Sau96I	GGNCC	1 cut(s)	196
ScrFI	CCNGG	1 cut(s)	105
SetI	ASST	5 cut(s)	45, 71, 201, 274, 369
Sfr274I	CTCGAG	1 cut(s)	229
SinI	GGWCC	1 cut(s)	196
SlaI	CTCGAG	1 cut(s)	229
SmlI	CTYRAG	1 cut(s)	229
SmoI	CTYRAG	1 cut(s)	229
Sse9I	AATT	4 cut(s)	58, 221, 313, 386
SsiI	CCGC	3 cut(s)	132, 147, 307
StyD4I	CCNGG	1 cut(s)	103
StyI	CCWWGG	2 cut(s)	156, 199
TaaI	ACNGT	1 cut(s)	293
TaiI	ACGT	1 cut(s)	71
TaqI	TCGA	2 cut(s)	230, 260
TasI	AATT	4 cut(s)	58, 221, 313, 386
Tru1I	TTAA	1 cut(s)	57
Tru9I	TTAA	1 cut(s)	57
TseI	GCWGC	1 cut(s)	126
TspGWI	ACGGA	1 cut(s)	180
VpaK11BI	GGWCC	1 cut(s)	196
VspI	ATTAAT	1 cut(s)	57
XapI	RAATTY	2 cut(s)	221, 386
XhoI	CTCGAG	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.