MD15G1261300.v1.1
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
N/A
Physical Location & Seq
Reverse (-)
22357671 .. 22357946
276 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1261300.v1.1.491

Sequence Viewer

Length: 276 bp
ATGGCACCTAGCACGCCTTCTTCTCCACACTCCAATTCAACTTGGACAGCCAAACAAAACAAATCATTTGAAATCGCTCTGGCAACATATGATAGGGAAACCCCTGATCGTTGGCATAATATTGCCAGGGTTGTTGGAGGGACGACTGAGGAGGAAGTGAAGAGGCAGTATGAGATCCTTCTAGCGGACATCAACCGCATTGAGTCAGGCAAAGTTCCACTTCCTAAGTATAGGAAAGCCAGAGAAAGCAGCATCACTGGTGAAGAAAAGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

92

Amino Acids

10.36

Weight (kDa)

9.05

Isoelectric Point (pI)

77.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AciI CCGC 2 cut(s) 185, 196
AclWI GGATC 1 cut(s) 169
AfiI CCNNNNNNNGG 1 cut(s) 184
AgsI TTSAA 2 cut(s) 39, 71
AjnI CCWGG 1 cut(s) 125
AlwI GGATC 1 cut(s) 169
ApeKI GCWGC 1 cut(s) 249
AsuHPI GGTGA 1 cut(s) 272
BanI GGYRCC 1 cut(s) 4
BbvI GCAGC 1 cut(s) 261
BciT130I CCWGG 1 cut(s) 127
BfaI CTAG 2 cut(s) 9, 182
BisI GCNGC 1 cut(s) 250
BlsI GCNGC 1 cut(s) 251
Bme1390I CCNGG 1 cut(s) 127
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 127
BmsI GCATC 1 cut(s) 261
BsaJI CCNNGG 1 cut(s) 126
Bsc4I CCNNNNNNNGG 1 cut(s) 184
Bse1I ACTGG 1 cut(s) 262
BseBI CCWGG 1 cut(s) 127
BseDI CCNNGG 1 cut(s) 126
BseLI CCNNNNNNNGG 1 cut(s) 184
BseMII CTCAG 1 cut(s) 138
BseNI ACTGG 1 cut(s) 262
BseRI GAGGAG 1 cut(s) 164
BseXI GCAGC 1 cut(s) 261
BshNI GGYRCC 1 cut(s) 4
BslFI GGGAC 1 cut(s) 154
BslI CCNNNNNNNGG 1 cut(s) 184
BsmFI GGGAC 1 cut(s) 154
Bsp143I GATC 2 cut(s) 106, 174
BspACI CCGC 2 cut(s) 185, 196
BspCNI CTCAG 1 cut(s) 139
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 169
BspT107I GGYRCC 1 cut(s) 4
BsrI ACTGG 1 cut(s) 262
BssECI CCNNGG 1 cut(s) 126
BssMI GATC 2 cut(s) 106, 174
Bst2UI CCWGG 1 cut(s) 127
Bst6I CTCTTC 1 cut(s) 155
BstC8I GCNNGC 1 cut(s) 14
BstDEI CTNAG 2 cut(s) 147, 225
BstKTI GATC 2 cut(s) 109, 177
BstMBI GATC 2 cut(s) 106, 174
BstNI CCWGG 1 cut(s) 127
BstSCI CCNGG 1 cut(s) 125
BstV1I GCAGC 1 cut(s) 261
BstX2I RGATCY 1 cut(s) 174
BstYI RGATCY 1 cut(s) 174
BtsIMutI CAGTG 1 cut(s) 255
Cac8I GCNNGC 1 cut(s) 14
CviJI RGCY 2 cut(s) 50, 239
CviKI_1 RGCY 2 cut(s) 50, 239
DdeI CTNAG 2 cut(s) 147, 225
DpnI GATC 2 cut(s) 108, 176
DpnII GATC 2 cut(s) 106, 174
Eam1104I CTCTTC 1 cut(s) 155
EarI CTCTTC 1 cut(s) 155
EcoRII CCWGG 1 cut(s) 125
FaiI YATR 5 cut(s) 88, 90, 117, 171, 231
FalI AAGNNNNNCTT 2 cut(s) 204, 236
FaqI GGGAC 1 cut(s) 154
FauNDI CATATG 1 cut(s) 88
Fnu4HI GCNGC 1 cut(s) 250
Fsp4HI GCNGC 1 cut(s) 250
FspBI CTAG 2 cut(s) 9, 182
GluI GCNGC 1 cut(s) 250
HinfI GANTC 1 cut(s) 203
HphI GGTGA 1 cut(s) 272
HpyAV CCTTC 2 cut(s) 27, 188
HpyF3I CTNAG 2 cut(s) 147, 225
Kzo9I GATC 2 cut(s) 106, 174
LpnPI CCDG 7 cut(s) 65, 112, 117, 139, 192, 243, 253
Lsp1109I GCAGC 1 cut(s) 261
LweI GCATC 1 cut(s) 261
MaeI CTAG 2 cut(s) 9, 182
MalI GATC 2 cut(s) 108, 176
MboI GATC 2 cut(s) 106, 174
MboII GAAGA 3 cut(s) 12, 172, 275
MflI RGATCY 1 cut(s) 174
MluCI AATT 1 cut(s) 34
MlyI GAGTC 1 cut(s) 212
MmeI TCCRAC 1 cut(s) 115
MnlI CCTC 5 cut(s) 131, 142, 145, 156, 264
MspR9I CCNGG 1 cut(s) 127
MvaI CCWGG 1 cut(s) 127
NdeI CATATG 1 cut(s) 88
NdeII GATC 2 cut(s) 106, 174
NlaIV GGNNCC 1 cut(s) 6
PkrI GCNGC 1 cut(s) 251
PleI GAGTC 1 cut(s) 211
PpsI GAGTC 1 cut(s) 211
Psp6I CCWGG 1 cut(s) 125
PspGI CCWGG 1 cut(s) 125
PspN4I GGNNCC 1 cut(s) 6
PsuI RGATCY 1 cut(s) 174
SatI GCNGC 1 cut(s) 250
Sau3AI GATC 2 cut(s) 106, 174
SchI GAGTC 1 cut(s) 212
ScrFI CCNGG 1 cut(s) 127
SetI ASST 2 cut(s) 10, 275
SfaNI GCATC 1 cut(s) 261
Sse9I AATT 1 cut(s) 34
SsiI CCGC 2 cut(s) 185, 196
SspI AATATT 1 cut(s) 121
SspMI CTAG 2 cut(s) 9, 182
StyD4I CCNGG 1 cut(s) 125
TasI AATT 1 cut(s) 34
TscAI CASTG 1 cut(s) 262
TseI GCWGC 1 cut(s) 249
TspRI CASTG 1 cut(s) 262
XspI CTAG 2 cut(s) 9, 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.