Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

40444090 .. 40444482

Gene Structure 393 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1345000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 177 bp

ATGAAGTCGCCGTTGACTTCTTTCCCGGTGATCGCCGCTATCGAACTCTACCATTACAAACCCTGGGATCACCCCGTTTTGACGCTAGACGGAGAGAAAGAGTGGTATTTCTTTACGCAAAGGAACCGGAGGTACAAGAACGGTTCGATGCCGAACAGGGCGGCCGGAAGTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002831 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009611 GO:0009628 GO:0009787 GO:0009788 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009968 GO:0010154 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0032101 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043900 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0047484 GO:0048316 GO:0048364 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0099402 GO:0140110 GO:1900055 GO:1900057 GO:1900150 GO:1901000 GO:1901002 GO:1901363 GO:1901419 GO:1901420 GO:1902584 GO:1902680 GO:1903506 GO:1903508 GO:1905623 GO:1905957 GO:1905958 GO:2000024 GO:2000026 GO:2000070 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

59

Amino Acids

6.77

Weight (kDa)

9.52

Isoelectric Point (pI)

52.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	7 - 57	1.9e-10	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	36, 161
AclWI	GGATC	1 cut(s)	75
AcoI	YGGCCR	1 cut(s)	162
AfaI	GTAC	1 cut(s)	134
AjnI	CCWGG	1 cut(s)	62
AlwI	GGATC	1 cut(s)	75
AoxI	GGCC	1 cut(s)	162
AsuC2I	CCSGG	1 cut(s)	26
AsuHPI	GGTGA	2 cut(s)	40, 62
BciT130I	CCWGG	1 cut(s)	64
BcnI	CCSGG	1 cut(s)	26
BfaI	CTAG	1 cut(s)	86
BisI	GCNGC	2 cut(s)	36, 162
BlsI	GCNGC	2 cut(s)	37, 163
Bme1390I	CCNGG	2 cut(s)	26, 64
BmiI	GGNNCC	1 cut(s)	125
BmrFI	CCNGG	2 cut(s)	26, 64
BmsI	GCATC	1 cut(s)	138
BpuMI	CCSGG	1 cut(s)	26
BsaJI	CCNNGG	2 cut(s)	62, 63
BsaWI	WCCGGW	1 cut(s)	126
BseBI	CCWGG	1 cut(s)	64
BseDI	CCNNGG	2 cut(s)	62, 63
BseX3I	CGGCCG	1 cut(s)	162
Bsh1285I	CGRYCG	1 cut(s)	165
BshFI	GGCC	1 cut(s)	164
BsiEI	CGRYCG	1 cut(s)	165
BsiSI	CCGG	3 cut(s)	26, 127, 165
BsnI	GGCC	1 cut(s)	164
Bsp143I	GATC	2 cut(s)	30, 67
BspACI	CCGC	2 cut(s)	36, 161
BspANI	GGCC	1 cut(s)	164
BspLI	GGNNCC	1 cut(s)	125
BspPI	GGATC	1 cut(s)	75
BssECI	CCNNGG	2 cut(s)	62, 63
BssMI	GATC	2 cut(s)	30, 67
Bst2UI	CCWGG	1 cut(s)	64
Bst4CI	ACNGT	1 cut(s)	143
BstKTI	GATC	2 cut(s)	33, 70
BstMBI	GATC	2 cut(s)	30, 67
BstMCI	CGRYCG	1 cut(s)	165
BstNI	CCWGG	1 cut(s)	64
BstSCI	CCNGG	2 cut(s)	24, 62
BstZI	CGGCCG	1 cut(s)	162
BsuRI	GGCC	1 cut(s)	164
CseI	GACGC	1 cut(s)	91
Csp6I	GTAC	1 cut(s)	133
CviJI	RGCY	1 cut(s)	164
CviKI_1	RGCY	1 cut(s)	164
CviQI	GTAC	1 cut(s)	133
DpnI	GATC	2 cut(s)	32, 69
DpnII	GATC	2 cut(s)	30, 67
EaeI	YGGCCR	1 cut(s)	162
EagI	CGGCCG	1 cut(s)	162
EclXI	CGGCCG	1 cut(s)	162
Eco52I	CGGCCG	1 cut(s)	162
EcoRII	CCWGG	1 cut(s)	62
Fnu4HI	GCNGC	2 cut(s)	36, 162
Fsp4HI	GCNGC	2 cut(s)	36, 162
FspBI	CTAG	1 cut(s)	86
GluI	GCNGC	2 cut(s)	36, 162
HaeIII	GGCC	1 cut(s)	164
HapII	CCGG	3 cut(s)	26, 127, 165
HgaI	GACGC	1 cut(s)	91
HincII	GTYRAC	1 cut(s)	15
HindII	GTYRAC	1 cut(s)	15
HpaII	CCGG	3 cut(s)	26, 127, 165
HphI	GGTGA	2 cut(s)	40, 62
Hpy166II	GTNNAC	1 cut(s)	15
Hpy8I	GTNNAC	1 cut(s)	15
HpyCH4III	ACNGT	1 cut(s)	143
Kzo9I	GATC	2 cut(s)	30, 67
LpnPI	CCDG	5 cut(s)	39, 49, 76, 140, 142
LweI	GCATC	1 cut(s)	138
MaeI	CTAG	1 cut(s)	86
MalI	GATC	2 cut(s)	32, 69
MboI	GATC	2 cut(s)	30, 67
MnlI	CCTC	1 cut(s)	123
MspI	CCGG	3 cut(s)	26, 127, 165
MspR9I	CCNGG	2 cut(s)	26, 64
MvaI	CCWGG	1 cut(s)	64
NciI	CCSGG	1 cut(s)	26
NdeII	GATC	2 cut(s)	30, 67
NlaIV	GGNNCC	1 cut(s)	125
PasI	CCCWGGG	1 cut(s)	63
PcsI	WCGNNNNNNNCGW	1 cut(s)	39
PkrI	GCNGC	2 cut(s)	37, 163
Psp6I	CCWGG	1 cut(s)	62
PspGI	CCWGG	1 cut(s)	62
PspN4I	GGNNCC	1 cut(s)	125
PsrI	GAACNNNNNNTAC	2 cut(s)	116, 148
RsaI	GTAC	1 cut(s)	134
RsaNI	GTAC	1 cut(s)	133
SatI	GCNGC	2 cut(s)	36, 162
Sau3AI	GATC	2 cut(s)	30, 67
ScrFI	CCNGG	2 cut(s)	26, 64
SetI	ASST	1 cut(s)	134
SfaNI	GCATC	1 cut(s)	138
SgeI	CNNG	9 cut(s)	37, 38, 75, 76, 86, 98, 139, 148, 169
SsiI	CCGC	2 cut(s)	36, 161
SspMI	CTAG	1 cut(s)	86
StyD4I	CCNGG	2 cut(s)	24, 62
TaaI	ACNGT	1 cut(s)	143
TaqI	TCGA	2 cut(s)	42, 146
TauI	GCSGC	2 cut(s)	38, 164
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	105
XspI	CTAG	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.