Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

21733831 .. 21735271

Gene Structure 1441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1218900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGGGGAGAGCTCCTTGCTGTGAGAAGATGGGACTGAAGAAGGGGCCATGGACCTCTGAAGAAGATCAAATTCTTACATCCTTCATCCCACAAATATGGCCATGGAAATTGGCGTGCCCTGCCAAAGCAAGCTGCTGCCGACTCCGGTGGATAAACTATTTGAGGCCGGATATTAAGAGAGGAAACTTCACAAGAGAAGAAGAGGAAGCTATCATTAAGTTGCATGAAATGCTGGGTAACAGGTGGTCAGCAATTGCAGCAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

89

Amino Acids

10.25

Weight (kDa)

9.17

Isoelectric Point (pI)

60.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_6	PF13921	17 - 69	4.9e-06	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	60 - 87	1.1e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	98
AcsI	RAATTY	1 cut(s)	69
AcuI	CTGAAG	2 cut(s)	56, 78
AluBI	AGCT	3 cut(s)	11, 132, 209
AluI	AGCT	3 cut(s)	11, 132, 209
Alw21I	GWGCWC	1 cut(s)	13
AoxI	GGCC	3 cut(s)	44, 98, 164
ApeKI	GCWGC	3 cut(s)	132, 135, 257
ApoI	RAATTY	1 cut(s)	69
AspS9I	GGNCC	2 cut(s)	44, 51
AvaII	GGWCC	1 cut(s)	51
BaeGI	GKGCMC	1 cut(s)	119
BalI	TGGCCA	1 cut(s)	100
BanII	GRGCYC	1 cut(s)	13
Bbv12I	GWGCWC	1 cut(s)	13
BbvI	GCAGC	2 cut(s)	119, 122
BccI	CCATC	1 cut(s)	22
BisI	GCNGC	3 cut(s)	133, 136, 258
BlsI	GCNGC	3 cut(s)	134, 137, 259
Bme18I	GGWCC	1 cut(s)	51
BmgT120I	GGNCC	2 cut(s)	44, 51
BmiI	GGNNCC	1 cut(s)	45
BsaJI	CCNNGG	2 cut(s)	47, 101
BsaWI	WCCGGW	1 cut(s)	144
BseDI	CCNNGG	2 cut(s)	47, 101
BseGI	GGATG	2 cut(s)	77, 84
BseSI	GKGCMC	1 cut(s)	119
BseXI	GCAGC	2 cut(s)	119, 122
BseYI	CCCAGC	1 cut(s)	232
BshFI	GGCC	3 cut(s)	46, 100, 166
BsiHKAI	GWGCWC	1 cut(s)	13
BsiSI	CCGG	2 cut(s)	145, 167
BslFI	GGGAC	1 cut(s)	45
BsmFI	GGGAC	1 cut(s)	45
BsnI	GGCC	3 cut(s)	46, 100, 166
Bsp1286I	GDGCHC	2 cut(s)	13, 119
Bsp143I	GATC	1 cut(s)	64
Bsp19I	CCATGG	2 cut(s)	47, 101
BspANI	GGCC	3 cut(s)	46, 100, 166
BspLI	GGNNCC	1 cut(s)	45
BssECI	CCNNGG	2 cut(s)	47, 101
BssMI	GATC	1 cut(s)	64
BssT1I	CCWWGG	2 cut(s)	47, 101
Bst6I	CTCTTC	1 cut(s)	195
BstAPI	GCANNNNNTGC	1 cut(s)	229
BstC8I	GCNNGC	2 cut(s)	115, 130
BstDSI	CCRYGG	2 cut(s)	47, 101
BstF5I	GGATG	2 cut(s)	77, 84
BstKTI	GATC	1 cut(s)	67
BstMBI	GATC	1 cut(s)	64
BstMWI	GCNNNNNNNGC	3 cut(s)	119, 229, 257
BstSLI	GKGCMC	1 cut(s)	119
BstV1I	GCAGC	2 cut(s)	119, 122
BstXI	CCANNNNNNTGG	1 cut(s)	96
BsuRI	GGCC	3 cut(s)	46, 100, 166
BtgI	CCRYGG	2 cut(s)	47, 101
BtsCI	GGATG	2 cut(s)	77, 84
Cac8I	GCNNGC	2 cut(s)	115, 130
Cfr13I	GGNCC	2 cut(s)	44, 51
CviAII	CATG	3 cut(s)	48, 102, 224
CviJI	RGCY	6 cut(s)	11, 46, 100, 132, 166, 209
CviKI_1	RGCY	6 cut(s)	11, 46, 100, 132, 166, 209
DpnI	GATC	1 cut(s)	66
DpnII	GATC	1 cut(s)	64
EaeI	YGGCCR	1 cut(s)	98
Eam1104I	CTCTTC	1 cut(s)	195
EarI	CTCTTC	1 cut(s)	195
Ecl136II	GAGCTC	1 cut(s)	11
Eco130I	CCWWGG	2 cut(s)	47, 101
Eco24I	GRGCYC	1 cut(s)	13
Eco47I	GGWCC	1 cut(s)	51
Eco53kI	GAGCTC	1 cut(s)	11
Eco57I	CTGAAG	2 cut(s)	56, 78
EcoICRI	GAGCTC	1 cut(s)	11
EcoT14I	CCWWGG	2 cut(s)	47, 101
EcoT38I	GRGCYC	1 cut(s)	13
ErhI	CCWWGG	2 cut(s)	47, 101
FaeI	CATG	3 cut(s)	51, 105, 227
FaiI	YATR	4 cut(s)	49, 97, 103, 225
FaqI	GGGAC	1 cut(s)	45
FatI	CATG	3 cut(s)	47, 101, 223
Fnu4HI	GCNGC	3 cut(s)	133, 136, 258
FokI	GGATG	2 cut(s)	64, 71
FriOI	GRGCYC	1 cut(s)	13
Fsp4HI	GCNGC	3 cut(s)	133, 136, 258
GluI	GCNGC	3 cut(s)	133, 136, 258
GsaI	CCCAGC	1 cut(s)	236
HaeIII	GGCC	3 cut(s)	46, 100, 166
HapII	CCGG	2 cut(s)	145, 167
Hin1II	CATG	3 cut(s)	51, 105, 227
HinfI	GANTC	1 cut(s)	141
HpaII	CCGG	2 cut(s)	145, 167
Hpy188I	TCNGA	1 cut(s)	58
HpyAV	CCTTC	2 cut(s)	34, 91
HpyCH4V	TGCA	2 cut(s)	223, 257
HpyF10VI	GCNNNNNNNGC	3 cut(s)	119, 229, 257
Hsp92II	CATG	3 cut(s)	51, 105, 227
Kzo9I	GATC	1 cut(s)	64
LmnI	GCTCC	1 cut(s)	16
LpnPI	CCDG	5 cut(s)	132, 158, 180, 218, 226
Lsp1109I	GCAGC	2 cut(s)	119, 122
MaeIII	GTNAC	1 cut(s)	236
MalI	GATC	1 cut(s)	66
MboI	GATC	1 cut(s)	64
MboII	GAAGA	6 cut(s)	37, 49, 71, 74, 209, 212
MfeI	CAATTG	1 cut(s)	252
MhlI	GDGCHC	2 cut(s)	13, 119
MlsI	TGGCCA	1 cut(s)	100
MluCI	AATT	3 cut(s)	69, 107, 252
MluNI	TGGCCA	1 cut(s)	100
MlyI	GAGTC	1 cut(s)	135
MnlI	CCTC	4 cut(s)	64, 156, 173, 196
Mox20I	TGGCCA	1 cut(s)	100
MscI	TGGCCA	1 cut(s)	100
MseI	TTAA	2 cut(s)	174, 216
MslI	CAYNNNNRTG	1 cut(s)	94
Msp20I	TGGCCA	1 cut(s)	100
MspI	CCGG	2 cut(s)	145, 167
MunI	CAATTG	1 cut(s)	252
MwoI	GCNNNNNNNGC	3 cut(s)	119, 229, 257
NcoI	CCATGG	2 cut(s)	47, 101
NdeII	GATC	1 cut(s)	64
NlaIII	CATG	3 cut(s)	51, 105, 227
NlaIV	GGNNCC	1 cut(s)	45
PkrI	GCNGC	3 cut(s)	134, 137, 259
PleI	GAGTC	1 cut(s)	135
PpsI	GAGTC	1 cut(s)	135
Psp124BI	GAGCTC	1 cut(s)	13
PspFI	CCCAGC	1 cut(s)	232
PspN4I	GGNNCC	1 cut(s)	45
PspPI	GGNCC	2 cut(s)	44, 51
RseI	CAYNNNNRTG	1 cut(s)	94
SacI	GAGCTC	1 cut(s)	13
SaqAI	TTAA	2 cut(s)	174, 216
SatI	GCNGC	3 cut(s)	133, 136, 258
Sau3AI	GATC	1 cut(s)	64
Sau96I	GGNCC	2 cut(s)	44, 51
SchI	GAGTC	1 cut(s)	135
SduI	GDGCHC	2 cut(s)	13, 119
SetI	ASST	5 cut(s)	13, 56, 134, 211, 245
SinI	GGWCC	1 cut(s)	51
SmiMI	CAYNNNNRTG	1 cut(s)	94
Sse9I	AATT	3 cut(s)	69, 107, 252
SstI	GAGCTC	1 cut(s)	13
StyI	CCWWGG	2 cut(s)	47, 101
TasI	AATT	3 cut(s)	69, 107, 252
Tru1I	TTAA	2 cut(s)	174, 216
Tru9I	TTAA	2 cut(s)	174, 216
TseI	GCWGC	3 cut(s)	132, 135, 257
TspDTI	ATGAA	2 cut(s)	73, 240
VpaK11BI	GGWCC	1 cut(s)	51
XapI	RAATTY	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.