Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

37476474 .. 37477886

Gene Structure 1413 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1276900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGACCTCAATAAGAATCTCAACCGAGCCCTTGAGCATCTCTGCTGATATATTACATGCGAATTGCCTGAATAACGAAAGTCATTATTCAAGCCGCGCTACTTCTCCATATGAAGTTAATCCAATGGCAGAGTTTGAGCCAGCTTTGGGAGAGACCAACCCTGCAGACTTTTGGGTCTCACCTGATTTAATTCTTGATTCTTCTAAGGACTACCCACAGTTACAAGAAGCTATGCCTGATTACTTTCAGCAGTACAAGTTTCCAAGCACAATGATGCCGTTGCAGTCATATGAACCCAGAGAATCACCTAGCTCATCATACTCAAATTTCACAGGGGACCTTAAAATGGCCGATGATGTGCATCAAATAGGTGGCATGTCACCATACTACGTGGGTTACTATGGGAATGAGGAAATGCAATTTGAAGGGTCTGAAACAGGGGATAGCCAAGCTCTAATTTGCAGGCAAGTAAGTGCAGATGGAAGTTTGGGGGAATTAGGAGGACTTTGGTTACAGGAAGACAATATGGTCATTGTGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0008283 GO:0009719 GO:0009725 GO:0009733 GO:0009787 GO:0009789 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0031323 GO:0031326 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901419 GO:1901421 GO:1903506 GO:1905957 GO:1905959 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

181

Amino Acids

20.07

Weight (kDa)

4.05

Isoelectric Point (pI)

64.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	173, 527
AccII	CGCG	1 cut(s)	96
AciI	CCGC	1 cut(s)	94
AcoI	YGGCCR	1 cut(s)	348
AcsI	RAATTY	1 cut(s)	325
AfaI	GTAC	1 cut(s)	254
AfiI	CCNNNNNNNGG	2 cut(s)	146, 346
AgsI	TTSAA	2 cut(s)	90, 425
AluBI	AGCT	4 cut(s)	143, 230, 312, 452
AluI	AGCT	4 cut(s)	143, 230, 312, 452
Alw26I	GTCTC	2 cut(s)	146, 181
AoxI	GGCC	1 cut(s)	348
ApoI	RAATTY	1 cut(s)	325
AspLEI	GCGC	1 cut(s)	98
AspS9I	GGNCC	1 cut(s)	337
AsuHPI	GGTGA	3 cut(s)	171, 297, 372
AvaII	GGWCC	1 cut(s)	337
BanII	GRGCYC	1 cut(s)	30
BbsI	GAAGAC	1 cut(s)	525
BccI	CCATC	1 cut(s)	473
BceAI	ACGGC	1 cut(s)	262
BcoDI	GTCTC	2 cut(s)	146, 181
BfaI	CTAG	1 cut(s)	309
BfmI	CTRYAG	1 cut(s)	162
BisI	GCNGC	1 cut(s)	94
BlsI	GCNGC	1 cut(s)	95
Bme18I	GGWCC	1 cut(s)	337
BmgT120I	GGNCC	1 cut(s)	337
BmiI	GGNNCC	1 cut(s)	338
BmsI	GCATC	3 cut(s)	45, 264, 370
BpiI	GAAGAC	1 cut(s)	525
BpuEI	CTTGAG	1 cut(s)	52
BsaAI	YACGTR	1 cut(s)	391
BsaBI	GATNNNNATC	1 cut(s)	360
BsaI	GGTCTC	2 cut(s)	146, 181
Bsc4I	CCNNNNNNNGG	2 cut(s)	146, 346
Bse8I	GATNNNNATC	1 cut(s)	360
BseJI	GATNNNNATC	1 cut(s)	360
BseLI	CCNNNNNNNGG	2 cut(s)	146, 346
BsgI	GTGCAG	1 cut(s)	495
Bsh1236I	CGCG	1 cut(s)	96
BshFI	GGCC	1 cut(s)	350
BslFI	GGGAC	1 cut(s)	350
BslI	CCNNNNNNNGG	2 cut(s)	146, 346
BsmAI	GTCTC	2 cut(s)	146, 181
BsmFI	GGGAC	1 cut(s)	350
BsnI	GGCC	1 cut(s)	350
Bso31I	GGTCTC	2 cut(s)	146, 181
Bsp1286I	GDGCHC	1 cut(s)	30
BspACI	CCGC	1 cut(s)	94
BspANI	GGCC	1 cut(s)	350
BspFNI	CGCG	1 cut(s)	96
BspLI	GGNNCC	1 cut(s)	338
BspMAI	CTGCAG	1 cut(s)	166
BspTNI	GGTCTC	2 cut(s)	146, 181
Bst4CI	ACNGT	1 cut(s)	219
BstBAI	YACGTR	1 cut(s)	391
BstC8I	GCNNGC	2 cut(s)	141, 464
BstDEI	CTNAG	1 cut(s)	204
BstFNI	CGCG	1 cut(s)	96
BstHHI	GCGC	1 cut(s)	98
BstMAI	GTCTC	2 cut(s)	146, 181
BstNSI	RCATGY	2 cut(s)	59, 379
BstSFI	CTRYAG	1 cut(s)	162
BstUI	CGCG	1 cut(s)	96
BstV2I	GAAGAC	1 cut(s)	525
BsuRI	GGCC	1 cut(s)	350
Cac8I	GCNNGC	2 cut(s)	141, 464
CfoI	GCGC	1 cut(s)	98
Cfr13I	GGNCC	1 cut(s)	337
Csp6I	GTAC	1 cut(s)	253
CviAII	CATG	2 cut(s)	56, 376
CviJI	RGCY	9 cut(s)	28, 93, 139, 143, 230, 312, 350, 447, 452
CviKI_1	RGCY	9 cut(s)	28, 93, 139, 143, 230, 312, 350, 447, 452
CviQI	GTAC	1 cut(s)	253
DdeI	CTNAG	1 cut(s)	204
DrdI	GACNNNNNNGTC	2 cut(s)	173, 527
DseDI	GACNNNNNNGTC	2 cut(s)	173, 527
EaeI	YGGCCR	1 cut(s)	348
Eco24I	GRGCYC	1 cut(s)	30
Eco31I	GGTCTC	2 cut(s)	146, 181
Eco47I	GGWCC	1 cut(s)	337
EcoO109I	RGGNCCY	1 cut(s)	337
EcoT38I	GRGCYC	1 cut(s)	30
FaeI	CATG	2 cut(s)	59, 379
FaqI	GGGAC	1 cut(s)	350
FatI	CATG	2 cut(s)	55, 375
FauNDI	CATATG	2 cut(s)	109, 289
Fnu4HI	GCNGC	1 cut(s)	94
FriOI	GRGCYC	1 cut(s)	30
Fsp4HI	GCNGC	1 cut(s)	94
FspBI	CTAG	1 cut(s)	309
GlaI	GCGC	1 cut(s)	97
GluI	GCNGC	1 cut(s)	94
HaeIII	GGCC	1 cut(s)	350
HhaI	GCGC	1 cut(s)	98
Hin1II	CATG	2 cut(s)	59, 379
Hin6I	GCGC	1 cut(s)	96
HinP1I	GCGC	1 cut(s)	96
HinfI	GANTC	3 cut(s)	15, 197, 302
HphI	GGTGA	3 cut(s)	171, 297, 372
Hpy188I	TCNGA	1 cut(s)	433
Hpy188III	TCNNGA	1 cut(s)	194
HpyAV	CCTTC	1 cut(s)	419
HpyCH4III	ACNGT	1 cut(s)	219
HpyCH4IV	ACGT	1 cut(s)	390
HpyCH4V	TGCA	6 cut(s)	164, 283, 361, 418, 462, 476
HpyF3I	CTNAG	1 cut(s)	204
HpySE526I	ACGT	1 cut(s)	390
Hsp92II	CATG	2 cut(s)	59, 379
HspAI	GCGC	1 cut(s)	96
LweI	GCATC	3 cut(s)	45, 264, 370
MaeI	CTAG	1 cut(s)	309
MaeII	ACGT	1 cut(s)	390
MaeIII	GTNAC	4 cut(s)	219, 378, 395, 510
MboII	GAAGA	2 cut(s)	192, 530
MhlI	GDGCHC	1 cut(s)	30
MluCI	AATT	6 cut(s)	61, 189, 325, 419, 456, 494
MnlI	CCTC	3 cut(s)	16, 403, 494
MseI	TTAA	3 cut(s)	117, 188, 342
MslI	CAYNNNNRTG	2 cut(s)	272, 536
MvnI	CGCG	1 cut(s)	96
NdeI	CATATG	2 cut(s)	109, 289
NlaIII	CATG	2 cut(s)	59, 379
NlaIV	GGNNCC	1 cut(s)	338
NmuCI	GTSAC	1 cut(s)	378
NspI	RCATGY	2 cut(s)	59, 379
PfeI	GAWTC	3 cut(s)	15, 197, 302
PkrI	GCNGC	1 cut(s)	95
Ppu21I	YACGTR	1 cut(s)	391
PpuMI	RGGWCCY	1 cut(s)	337
Psp5II	RGGWCCY	1 cut(s)	337
PspN4I	GGNNCC	1 cut(s)	338
PspPI	GGNCC	1 cut(s)	337
PspPPI	RGGWCCY	1 cut(s)	337
PstI	CTGCAG	1 cut(s)	166
RsaI	GTAC	1 cut(s)	254
RsaNI	GTAC	1 cut(s)	253
RseI	CAYNNNNRTG	2 cut(s)	272, 536
SaqAI	TTAA	3 cut(s)	117, 188, 342
SatI	GCNGC	1 cut(s)	94
Sau96I	GGNCC	1 cut(s)	337
SduI	GDGCHC	1 cut(s)	30
SfaNI	GCATC	3 cut(s)	45, 264, 370
SfcI	CTRYAG	1 cut(s)	162
SinI	GGWCC	1 cut(s)	337
SmiMI	CAYNNNNRTG	2 cut(s)	272, 536
SmlI	CTYRAG	1 cut(s)	31
SmoI	CTYRAG	1 cut(s)	31
Sse9I	AATT	6 cut(s)	61, 189, 325, 419, 456, 494
SsiI	CCGC	1 cut(s)	94
SspMI	CTAG	1 cut(s)	309
TaaI	ACNGT	1 cut(s)	219
TaiI	ACGT	1 cut(s)	393
TasI	AATT	6 cut(s)	61, 189, 325, 419, 456, 494
TatI	WGTACW	1 cut(s)	252
TauI	GCSGC	1 cut(s)	96
TfiI	GAWTC	3 cut(s)	15, 197, 302
Tru1I	TTAA	3 cut(s)	117, 188, 342
Tru9I	TTAA	3 cut(s)	117, 188, 342
TseFI	GTSAC	1 cut(s)	378
Tsp45I	GTSAC	1 cut(s)	378
TspDTI	ATGAA	2 cut(s)	126, 306
VpaK11BI	GGWCC	1 cut(s)	337
XapI	RAATTY	1 cut(s)	325
XceI	RCATGY	2 cut(s)	59, 379
XspI	CTAG	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.