Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

23427713 .. 23429067

Gene Structure 1355 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1195400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGCTAAGGACACTGCTTAATACTCCAGGTGCTAAAAATGGTGTTCCTGAGTCAGGGGACAAGCCTGTGCAAATGGAAACTGATGCGAAGACTGATGCTAAAAAGATAAAGGTAAAGAAAACAAATATTCGTTTGACAGAGTTGGTTTATGGAAGGATGCCTCCAAGCGAAGTGCAAAAGGCAATTGAGAAGGAGTTTGAGATGGCCTTACAAGACCGTGTTATAGAAGAAACAAAGGACAAGAAAATTTTTGTCAAGGCCTATGTCTATGACATGAGAAACAAGGAGGTAGAGGACTGGCTGTATGAAGATGGTGAAGATGAAACCAAAGGAGTTTACATTGCCAAGCTTGAGGAACTCAAGAAGCAAGGTGATCCCATTGAAGAGGGGGTCAAGAAGCGCACAGAGAGGGGAACGGTGATTGATCAACTCGCTTACTGTGTTAATAGTTACAGAAAAGCTGCAGCATTGAATGACGCAAAATTTGAACACATTGATATTACTGATAAACAGAAGTTGAGGGTCTTGATGAGCTCTCTTCTCCTTCCTCCATTCTCGACCATTCCAACTCACAATGTTCTTTGTGTTATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005524 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0008144 GO:0008150 GO:0009266 GO:0009408 GO:0009506 GO:0009628 GO:0010035 GO:0010038 GO:0016020 GO:0017076 GO:0030054 GO:0030312 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0055044 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04530 ko04612 map04530 map04612

Pfam Domains

Protein Families

HSP70 MreB_Mbl

Protein Analysis

198

Amino Acids

22.52

Weight (kDa)

6.77

Isoelectric Point (pI)

46.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	368
AcsI	RAATTY	2 cut(s)	246, 482
AfiI	CCNNNNNNNGG	1 cut(s)	53
AgsI	TTSAA	3 cut(s)	383, 472, 488
AjnI	CCWGG	1 cut(s)	25
AluBI	AGCT	3 cut(s)	349, 461, 534
AluI	AGCT	3 cut(s)	349, 461, 534
Alw21I	GWGCWC	1 cut(s)	536
AlwI	GGATC	1 cut(s)	368
AoxI	GGCC	2 cut(s)	204, 258
ApeKI	GCWGC	2 cut(s)	461, 464
ApoI	RAATTY	2 cut(s)	246, 482
ArsI	GACNNNNNNTTYG	2 cut(s)	467, 499
AspLEI	GCGC	1 cut(s)	402
AsuHPI	GGTGA	3 cut(s)	326, 383, 430
BanII	GRGCYC	1 cut(s)	536
BbsI	GAAGAC	1 cut(s)	95
Bbv12I	GWGCWC	1 cut(s)	536
BbvI	GCAGC	2 cut(s)	448, 476
BccI	CCATC	2 cut(s)	196, 305
BciT130I	CCWGG	1 cut(s)	27
BclI	TGATCA	1 cut(s)	424
BfmI	CTRYAG	1 cut(s)	462
BisI	GCNGC	2 cut(s)	462, 465
BlsI	GCNGC	2 cut(s)	463, 466
Bme1390I	CCNGG	1 cut(s)	27
BmrFI	CCNGG	1 cut(s)	27
BmsI	GCATC	3 cut(s)	73, 85, 147
BpiI	GAAGAC	1 cut(s)	95
BpmI	CTGGAG	1 cut(s)	9
Bpu10I	CCTNAGC	1 cut(s)	5
BpuEI	CTTGAG	2 cut(s)	344, 371
Bsc4I	CCNNNNNNNGG	1 cut(s)	53
Bse1I	ACTGG	1 cut(s)	302
Bse3DI	GCAATG	1 cut(s)	339
BseBI	CCWGG	1 cut(s)	27
BseGI	GGATG	1 cut(s)	162
BseLI	CCNNNNNNNGG	1 cut(s)	53
BseMI	GCAATG	1 cut(s)	339
BseMII	CTCAG	1 cut(s)	39
BseNI	ACTGG	1 cut(s)	302
BseXI	GCAGC	2 cut(s)	448, 476
BshFI	GGCC	2 cut(s)	206, 260
BsiHKAI	GWGCWC	1 cut(s)	536
BslFI	GGGAC	1 cut(s)	71
BslI	CCNNNNNNNGG	1 cut(s)	53
BsmFI	GGGAC	1 cut(s)	71
BsnI	GGCC	2 cut(s)	206, 260
Bsp1286I	GDGCHC	1 cut(s)	536
Bsp143I	GATC	2 cut(s)	373, 424
BspANI	GGCC	2 cut(s)	206, 260
BspCNI	CTCAG	1 cut(s)	40
BspMAI	CTGCAG	1 cut(s)	466
BspPI	GGATC	1 cut(s)	368
BsrDI	GCAATG	1 cut(s)	339
BsrI	ACTGG	1 cut(s)	302
BssMI	GATC	2 cut(s)	373, 424
Bst2UI	CCWGG	1 cut(s)	27
Bst4CI	ACNGT	3 cut(s)	218, 418, 440
Bst6I	CTCTTC	2 cut(s)	378, 543
BstDEI	CTNAG	2 cut(s)	5, 48
BstENI	CCTNNNNNAGG	1 cut(s)	51
BstF5I	GGATG	1 cut(s)	162
BstHHI	GCGC	1 cut(s)	402
BstKTI	GATC	2 cut(s)	376, 427
BstMBI	GATC	2 cut(s)	373, 424
BstNI	CCWGG	1 cut(s)	27
BstSCI	CCNGG	1 cut(s)	25
BstSFI	CTRYAG	1 cut(s)	462
BstV1I	GCAGC	2 cut(s)	448, 476
BstV2I	GAAGAC	1 cut(s)	95
BsuRI	GGCC	2 cut(s)	206, 260
BtsCI	GGATG	1 cut(s)	162
BtsI	GCAGTG	1 cut(s)	11
BtsIMutI	CAGTG	1 cut(s)	11
CfoI	GCGC	1 cut(s)	402
CseI	GACGC	1 cut(s)	485
CviAII	CATG	1 cut(s)	274
CviJI	RGCY	7 cut(s)	64, 206, 260, 301, 349, 461, 534
CviKI_1	RGCY	7 cut(s)	64, 206, 260, 301, 349, 461, 534
DdeI	CTNAG	2 cut(s)	5, 48
DpnI	GATC	2 cut(s)	375, 426
DpnII	GATC	2 cut(s)	373, 424
Eam1104I	CTCTTC	2 cut(s)	378, 543
EarI	CTCTTC	2 cut(s)	378, 543
Ecl136II	GAGCTC	1 cut(s)	534
Eco147I	AGGCCT	1 cut(s)	260
Eco24I	GRGCYC	1 cut(s)	536
Eco53kI	GAGCTC	1 cut(s)	534
EcoICRI	GAGCTC	1 cut(s)	534
EcoNI	CCTNNNNNAGG	1 cut(s)	51
EcoRII	CCWGG	1 cut(s)	25
EcoT38I	GRGCYC	1 cut(s)	536
FaeI	CATG	1 cut(s)	277
FaiI	YATR	6 cut(s)	150, 224, 264, 270, 275, 306
FaqI	GGGAC	1 cut(s)	71
FatI	CATG	1 cut(s)	273
FbaI	TGATCA	1 cut(s)	424
Fnu4HI	GCNGC	2 cut(s)	462, 465
FokI	GGATG	1 cut(s)	169
FriOI	GRGCYC	1 cut(s)	536
Fsp4HI	GCNGC	2 cut(s)	462, 465
GlaI	GCGC	1 cut(s)	401
GluI	GCNGC	2 cut(s)	462, 465
GsuI	CTGGAG	1 cut(s)	9
HaeIII	GGCC	2 cut(s)	206, 260
HgaI	GACGC	1 cut(s)	485
HhaI	GCGC	1 cut(s)	402
Hin1II	CATG	1 cut(s)	277
Hin6I	GCGC	1 cut(s)	400
HinP1I	GCGC	1 cut(s)	400
HindIII	AAGCTT	1 cut(s)	347
HinfI	GANTC	1 cut(s)	50
HphI	GGTGA	3 cut(s)	326, 383, 430
Hpy166II	GTNNAC	1 cut(s)	337
Hpy188III	TCNNGA	5 cut(s)	47, 361, 394, 526, 556
Hpy8I	GTNNAC	1 cut(s)	337
HpyAV	CCTTC	3 cut(s)	147, 184, 554
HpyCH4III	ACNGT	3 cut(s)	218, 418, 440
HpyCH4V	TGCA	3 cut(s)	70, 175, 464
HpyF3I	CTNAG	2 cut(s)	5, 48
Hsp92II	CATG	1 cut(s)	277
HspAI	GCGC	1 cut(s)	400
Ksp22I	TGATCA	1 cut(s)	424
Kzo9I	GATC	2 cut(s)	373, 424
LpnPI	CCDG	6 cut(s)	12, 39, 39, 60, 78, 283
Lsp1109I	GCAGC	2 cut(s)	448, 476
LweI	GCATC	3 cut(s)	73, 85, 147
MaeIII	GTNAC	1 cut(s)	449
MalI	GATC	2 cut(s)	375, 426
MboI	GATC	2 cut(s)	373, 424
MboII	GAAGA	6 cut(s)	100, 239, 320, 329, 395, 530
MfeI	CAATTG	1 cut(s)	183
MhlI	GDGCHC	1 cut(s)	536
MluCI	AATT	3 cut(s)	183, 246, 482
MlyI	GAGTC	1 cut(s)	59
MmeI	TCCRAC	1 cut(s)	590
MnlI	CCTC	8 cut(s)	171, 280, 286, 346, 379, 402, 513, 558
MseI	TTAA	2 cut(s)	18, 444
MspR9I	CCNGG	1 cut(s)	27
MunI	CAATTG	1 cut(s)	183
MvaI	CCWGG	1 cut(s)	27
NdeII	GATC	2 cut(s)	373, 424
NlaIII	CATG	1 cut(s)	277
PceI	AGGCCT	1 cut(s)	260
PkrI	GCNGC	2 cut(s)	463, 466
PleI	GAGTC	1 cut(s)	58
PpsI	GAGTC	1 cut(s)	58
Psp124BI	GAGCTC	1 cut(s)	536
Psp6I	CCWGG	1 cut(s)	25
PspGI	CCWGG	1 cut(s)	25
PstI	CTGCAG	1 cut(s)	466
SacI	GAGCTC	1 cut(s)	536
SaqAI	TTAA	2 cut(s)	18, 444
SatI	GCNGC	2 cut(s)	462, 465
Sau3AI	GATC	2 cut(s)	373, 424
SchI	GAGTC	1 cut(s)	59
ScrFI	CCNGG	1 cut(s)	27
SduI	GDGCHC	1 cut(s)	536
SetI	ASST	7 cut(s)	31, 114, 291, 351, 373, 463, 536
SfaNI	GCATC	3 cut(s)	73, 85, 147
SfcI	CTRYAG	1 cut(s)	462
SmlI	CTYRAG	2 cut(s)	350, 359
SmoI	CTYRAG	2 cut(s)	350, 359
Sse9I	AATT	3 cut(s)	183, 246, 482
SseBI	AGGCCT	1 cut(s)	260
SspI	AATATT	1 cut(s)	127
SstI	GAGCTC	1 cut(s)	536
StuI	AGGCCT	1 cut(s)	260
StyD4I	CCNGG	1 cut(s)	25
TaaI	ACNGT	3 cut(s)	218, 418, 440
TaqI	TCGA	1 cut(s)	557
TasI	AATT	3 cut(s)	183, 246, 482
Tru1I	TTAA	2 cut(s)	18, 444
Tru9I	TTAA	2 cut(s)	18, 444
TscAI	CASTG	1 cut(s)	18
TseI	GCWGC	2 cut(s)	461, 464
TspDTI	ATGAA	2 cut(s)	321, 336
TspRI	CASTG	1 cut(s)	18
XagI	CCTNNNNNAGG	1 cut(s)	51
XapI	RAATTY	2 cut(s)	246, 482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.