Prupe.1G001500_v2.0.a1

Heavy-metal-associated domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Forward (+)
209501 .. 210249
749 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G001500.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 309 bp
ATGGAGATTGTAGAGTTAAAGGTTCGTCTACACTGCAGGGTCTGTGAGAAGGCAGTTCGTAAAGCCTTGTGCAGAATCAAAGGAGTAAGATGCGTTGAAATAGATGTGACATCCAACAAGATCACGGTATTGGGATTTATGGATCGCAAAATGATTGTAAAAGCAGTGAGGAAGACTGGGAGAAGAGCTGAGGTGTGGCCATCATCCCCACCATCCACATCAATTTTATCAAAATCATGTTGCCCGGCCCGGGAGCAGCCTACTTCCCCTTCTGGATTTCGGTGCATTCTTCCAAGCTGGGCTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

103

Amino Acids

11.48

Weight (kDa)

10.0

Isoelectric Point (pI)

50.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 28
AclWI GGATC 1 cut(s) 150
AcoI YGGCCR 1 cut(s) 197
AfiI CCNNNNNNNGG 1 cut(s) 250
AgsI TTSAA 1 cut(s) 98
AluBI AGCT 2 cut(s) 188, 297
AluI AGCT 2 cut(s) 188, 297
AlwI GGATC 1 cut(s) 150
AlwNI CAGNNNCTG 1 cut(s) 42
Ama87I CYCGRG 1 cut(s) 249
AoxI GGCC 2 cut(s) 197, 246
ApeKI GCWGC 1 cut(s) 256
AspS9I GGNCC 1 cut(s) 247
AsuC2I CCSGG 3 cut(s) 245, 250, 251
AvaI CYCGRG 1 cut(s) 249
BalI TGGCCA 1 cut(s) 199
BbsI GAAGAC 1 cut(s) 179
BbvCI CCTCAGC 1 cut(s) 189
BbvI GCAGC 1 cut(s) 268
BccI CCATC 2 cut(s) 208, 220
BcnI CCSGG 3 cut(s) 245, 250, 251
BfmI CTRYAG 1 cut(s) 34
BisI GCNGC 1 cut(s) 257
BlsI GCNGC 1 cut(s) 258
Bme1390I CCNGG 3 cut(s) 245, 250, 251
BmeT110I CYCGRG 1 cut(s) 249
BmgT120I GGNCC 1 cut(s) 247
BmrFI CCNGG 3 cut(s) 245, 250, 251
BmrI ACTGGG 1 cut(s) 186
BmsI GCATC 1 cut(s) 80
BmuI ACTGGG 1 cut(s) 186
BpiI GAAGAC 1 cut(s) 179
Bpu10I CCTNAGC 1 cut(s) 189
BpuMI CCSGG 3 cut(s) 245, 250, 251
BsaJI CCNNGG 1 cut(s) 249
Bsc4I CCNNNNNNNGG 1 cut(s) 250
Bse1I ACTGG 1 cut(s) 181
BseDI CCNNGG 1 cut(s) 249
BseGI GGATG 3 cut(s) 110, 203, 212
BseLI CCNNNNNNNGG 1 cut(s) 250
BseMII CTCAG 1 cut(s) 180
BseNI ACTGG 1 cut(s) 181
BseXI GCAGC 1 cut(s) 268
BseYI CCCAGC 1 cut(s) 297
BsgI GTGCAG 1 cut(s) 91
BshFI GGCC 2 cut(s) 199, 248
BsiHKCI CYCGRG 1 cut(s) 249
BsiSI CCGG 2 cut(s) 245, 250
BslI CCNNNNNNNGG 1 cut(s) 250
BsmI GAATGC 1 cut(s) 285
BsnI GGCC 2 cut(s) 199, 248
BsoBI CYCGRG 1 cut(s) 249
Bsp143I GATC 2 cut(s) 120, 142
BspANI GGCC 2 cut(s) 199, 248
BspCNI CTCAG 1 cut(s) 181
BspMAI CTGCAG 1 cut(s) 38
BspPI GGATC 1 cut(s) 150
BspQI GCTCTTC 1 cut(s) 178
BsrI ACTGG 1 cut(s) 181
BssECI CCNNGG 1 cut(s) 249
BssMI GATC 2 cut(s) 120, 142
Bst4CI ACNGT 1 cut(s) 127
Bst6I CTCTTC 1 cut(s) 178
BstDEI CTNAG 1 cut(s) 189
BstF5I GGATG 3 cut(s) 110, 203, 212
BstKTI GATC 2 cut(s) 123, 145
BstMBI GATC 2 cut(s) 120, 142
BstSCI CCNGG 3 cut(s) 243, 248, 249
BstSFI CTRYAG 1 cut(s) 34
BstV1I GCAGC 1 cut(s) 268
BstV2I GAAGAC 1 cut(s) 179
BsuRI GGCC 2 cut(s) 199, 248
BtsCI GGATG 3 cut(s) 110, 203, 212
BtsI GCAGTG 2 cut(s) 31, 171
BtsIMutI CAGTG 2 cut(s) 31, 171
CaiI CAGNNNCTG 1 cut(s) 42
Cfr13I GGNCC 1 cut(s) 247
Cfr9I CCCGGG 1 cut(s) 249
CviAII CATG 1 cut(s) 237
CviJI RGCY 7 cut(s) 65, 188, 199, 248, 259, 297, 302
CviKI_1 RGCY 7 cut(s) 65, 188, 199, 248, 259, 297, 302
DdeI CTNAG 1 cut(s) 189
DpnI GATC 2 cut(s) 122, 144
DpnII GATC 2 cut(s) 120, 142
EaeI YGGCCR 1 cut(s) 197
Eam1104I CTCTTC 1 cut(s) 178
EarI CTCTTC 1 cut(s) 178
Eco88I CYCGRG 1 cut(s) 249
FaeI CATG 1 cut(s) 240
FaiI YATR 2 cut(s) 140, 238
FalI AAGNNNNNCTT 1 cut(s) 286
FatI CATG 1 cut(s) 236
FblI GTMKAC 1 cut(s) 28
Fnu4HI GCNGC 1 cut(s) 257
FokI GGATG 3 cut(s) 97, 190, 199
Fsp4HI GCNGC 1 cut(s) 257
GluI GCNGC 1 cut(s) 257
GsaI CCCAGC 1 cut(s) 301
HaeIII GGCC 2 cut(s) 199, 248
HapII CCGG 2 cut(s) 245, 250
Hin1II CATG 1 cut(s) 240
HinfI GANTC 1 cut(s) 75
HpaII CCGG 2 cut(s) 245, 250
Hpy166II GTNNAC 1 cut(s) 29
Hpy188III TCNNGA 1 cut(s) 273
Hpy8I GTNNAC 1 cut(s) 29
HpyAV CCTTC 2 cut(s) 43, 279
HpyCH4III ACNGT 1 cut(s) 127
HpyCH4V TGCA 3 cut(s) 36, 72, 285
HpyF3I CTNAG 1 cut(s) 189
Hsp92II CATG 1 cut(s) 240
Kzo9I GATC 2 cut(s) 120, 142
LguI GCTCTTC 1 cut(s) 178
LmnI GCTCC 1 cut(s) 253
LpnPI CCDG 6 cut(s) 22, 162, 258, 258, 263, 283
Lsp1109I GCAGC 1 cut(s) 268
LweI GCATC 1 cut(s) 80
MaeIII GTNAC 1 cut(s) 106
MalI GATC 2 cut(s) 122, 144
MboI GATC 2 cut(s) 120, 142
MboII GAAGA 3 cut(s) 184, 195, 281
MlsI TGGCCA 1 cut(s) 199
MluCI AATT 1 cut(s) 222
MluNI TGGCCA 1 cut(s) 199
MmeI TCCRAC 1 cut(s) 138
MnlI CCTC 2 cut(s) 162, 184
Mox20I TGGCCA 1 cut(s) 199
MscI TGGCCA 1 cut(s) 199
MseI TTAA 2 cut(s) 17, 307
Msp20I TGGCCA 1 cut(s) 199
MspI CCGG 2 cut(s) 245, 250
MspR9I CCNGG 3 cut(s) 245, 250, 251
Mva1269I GAATGC 1 cut(s) 285
NciI CCSGG 3 cut(s) 245, 250, 251
NdeII GATC 2 cut(s) 120, 142
NlaIII CATG 1 cut(s) 240
NmuCI GTSAC 1 cut(s) 106
PciSI GCTCTTC 1 cut(s) 178
PctI GAATGC 1 cut(s) 285
PfeI GAWTC 1 cut(s) 75
PkrI GCNGC 1 cut(s) 258
PspFI CCCAGC 1 cut(s) 297
PspPI GGNCC 1 cut(s) 247
PstI CTGCAG 1 cut(s) 38
PstNI CAGNNNCTG 1 cut(s) 42
SapI GCTCTTC 1 cut(s) 178
SaqAI TTAA 2 cut(s) 17, 307
SatI GCNGC 1 cut(s) 257
Sau3AI GATC 2 cut(s) 120, 142
Sau96I GGNCC 1 cut(s) 247
ScrFI CCNGG 3 cut(s) 245, 250, 251
SetI ASST 4 cut(s) 24, 190, 195, 299
SfaNI GCATC 1 cut(s) 80
SfcI CTRYAG 1 cut(s) 34
SmaI CCCGGG 1 cut(s) 251
Sse9I AATT 1 cut(s) 222
StyD4I CCNGG 3 cut(s) 243, 248, 249
TaaI ACNGT 1 cut(s) 127
TasI AATT 1 cut(s) 222
TfiI GAWTC 1 cut(s) 75
Tru1I TTAA 2 cut(s) 17, 307
Tru9I TTAA 2 cut(s) 17, 307
TscAI CASTG 2 cut(s) 38, 171
TseFI GTSAC 1 cut(s) 106
TseI GCWGC 1 cut(s) 256
Tsp45I GTSAC 1 cut(s) 106
TspMI CCCGGG 1 cut(s) 249
TspRI CASTG 2 cut(s) 38, 171
XmaI CCCGGG 1 cut(s) 249
XmiI GTMKAC 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.