Prupe.1G005100_v2.0.a1

transcriptional co-repressor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Forward (+)
458431 .. 464662
6232 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G005100.1_v2.0.a1.CDS.10

Sequence Viewer

Length: 1539 bp
ATGAAACACCCCAATCCAATTGACTCAGAGTCAGAGACATCCCGACCAGTCCTTGATGCTAGAGTGGCCCTTCTGAAATCAACAAACCATTCTGGTTTTCTGATATTTAGTTATTTTGGAAACCCCGGTAGTGTTAATGCGGCATTACAACAAATCCAGGCTCGAAGTCAACAGACCACAGACATAAAGAGTGAAGTTAACATGGGCACTGCTCAGAGATCTTTGCCTATGGATTCTTCAATTTATGGGCAGGGCATGATGCAGTCAAAACCAGGAATGGGGAATGCAGTTCATGTGTCACAGATGCATCACTCTTCCTCTCAACAACAACAAGATCCTTTGCAGCCTGAGCAAGTACAACAGAATAGCTGCAAGAGGAAAGGACCTTCTTCCTCTGGAGCTGCTAACAGTACTGGTACAGGAAATACAATTGGTCCTTCACCCAACTCTCAACCATCAACGCCTTCCACCCATACCCCTGGAGATGGAGTTTCTATGGCTGGTAATTTGCCAAATGCCAGGAAATTTGATGCTCCTAATTATTTGATTATGTTTATTAGATGTCCATGTTTCAATGGATATGCAATTGATAAAGGTGTTGATGACATTGAACAATTCGGAGATGTTGGCTCCTTAGAAGATAATGTGGAATCCTTTTTATCACATGATGATGGAGATGGAAGGGATCTTTTTGGCACATTGAAACGGAACCCTGCACATTCTGCAGAAGCTTCAAAGGGTTTTTCCTTCAGTGAAGTTGGTTCAATACGTAAAAGTAGTAGCAAAGTTGTTGTCTGGAATATGGAAACACTGCAAACTGAAAGCACATCAGAGGAGCACTCCTTGATAATTACTGATGTTCGATTTAGACCAAATTCAGCAAATTCAACTCAGTTGGCAACTTCTTCATTTGACACAACTGTGCGACTTTGGGATGCTGCTGAATTCATTTTTGCAGGGCATACCTCGCATGTAATGTCACTTGATTTCCTTCCTAAGAAGAATAACCTTTTCTGCTCCTGTGATGCTAACAATGAGATTCGCTTTTGGAATATCAATCAGTGTTCTTGCACTCGCGTTTCTAAGAGAGGTTCAACACAGGTGAGATTCCAGCCGAGAATTGGACAGTTTTTTGCTGCTGCATCTGGAAATGTTGTGTCTATATTTGATGCTGAGAGTGACAGGCAGACACATTCATTGCAATTGTTAATTTCAACGGAACTTAAAGCACGATGTTCTGAATCTCAGGGTCACTCCACTGAGGTACACTCTCTTTGCTGGGATACAAATGGAGATTATTTGGCATCTGTCAGAGTGTGGTCATTATCCTCTGGAGAGTGCATTCATGAACTCAGTCCCAGTGGAAACATGTTCCATTCTTGTGTTTTCCATCCAAGCTACTCCACTCACTTGGTCATTGGAGGCTACCAGTTGGAGCTCTGGAACATGGCTGAGAATAATTGTATGACCATTCAGGCTCATGAGGGTGTAATATCAGCTTTAGCATCTCACGACAAATCTGTTAAAATCTGGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0001558 GO:0001666 GO:0003002 GO:0003006 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009798 GO:0009845 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010154 GO:0010191 GO:0010214 GO:0010243 GO:0010272 GO:0010393 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0030307 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0036293 GO:0040008 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045892 GO:0045927 GO:0045934 GO:0045995 GO:0046677 GO:0046898 GO:0048316 GO:0048359 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048608 GO:0048609 GO:0048638 GO:0048639 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051510 GO:0051512 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060992 GO:0061458 GO:0065001 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0071704 GO:0080001 GO:0080090 GO:0090351 GO:0097305 GO:1901654 GO:1901698 GO:1901700 GO:1902074 GO:1902183 GO:1902679 GO:1903506 GO:1903507 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LisH WD40

Protein Analysis

513

Amino Acids

55.98

Weight (kDa)

6.04

Isoelectric Point (pI)

45.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 1077
AciI CCGC 1 cut(s) 140
AclWI GGATC 2 cut(s) 329, 693
AcsI RAATTY 4 cut(s) 524, 874, 883, 944
AcuI CTGAAG 1 cut(s) 733
AfaI GTAC 4 cut(s) 357, 412, 418, 1266
AfiI CCNNNNNNNGG 3 cut(s) 278, 485, 1121
AflIII ACRYGT 1 cut(s) 1368
AgsI TTSAA 9 cut(s) 240, 574, 611, 703, 735, 765, 888, 1095, 1215
AhdI GACNNNNNGTC 1 cut(s) 28
AjnI CCWGG 4 cut(s) 156, 271, 478, 518
AleI CACNNNNGTG 1 cut(s) 920
AluBI AGCT 6 cut(s) 369, 401, 731, 1398, 1438, 1499
AluI AGCT 6 cut(s) 369, 401, 731, 1398, 1438, 1499
Alw21I GWGCWC 2 cut(s) 840, 1440
Alw26I GTCTC 1 cut(s) 29
AlwI GGATC 2 cut(s) 329, 693
AoxI GGCC 1 cut(s) 66
ApeKI GCWGC 6 cut(s) 343, 369, 401, 938, 1136, 1139
ApoI RAATTY 4 cut(s) 524, 874, 883, 944
ArsI GACNNNNNNTTYG 2 cut(s) 777, 809
AspS9I GGNCC 3 cut(s) 67, 383, 434
AsuC2I CCSGG 1 cut(s) 126
AsuHPI GGTGA 2 cut(s) 432, 1114
AvaII GGWCC 2 cut(s) 383, 434
BaeGI GKGCMC 1 cut(s) 209
BanII GRGCYC 1 cut(s) 1440
Bbv12I GWGCWC 2 cut(s) 840, 1440
BbvI GCAGC 6 cut(s) 355, 356, 388, 925, 1123, 1126
BccI CCATC 5 cut(s) 463, 479, 665, 671, 1398
BciT130I CCWGG 4 cut(s) 158, 273, 480, 520
BciVI GTATCC 1 cut(s) 1276
BcnI CCSGG 1 cut(s) 126
BcoDI GTCTC 1 cut(s) 29
BfaI CTAG 1 cut(s) 60
BfmI CTRYAG 1 cut(s) 723
BfuI GTATCC 1 cut(s) 1276
BglII AGATCT 1 cut(s) 218
BisI GCNGC 7 cut(s) 141, 344, 370, 402, 939, 1137, 1140
BlsI GCNGC 7 cut(s) 142, 345, 371, 403, 940, 1138, 1141
BmcAI AGTACT 1 cut(s) 412
Bme1390I CCNGG 5 cut(s) 126, 158, 273, 480, 520
Bme18I GGWCC 2 cut(s) 383, 434
BmeRI GACNNNNNGTC 1 cut(s) 28
BmgT120I GGNCC 3 cut(s) 67, 383, 434
BmiI GGNNCC 2 cut(s) 631, 710
BmrFI CCNGG 5 cut(s) 126, 158, 273, 480, 520
BmrI ACTGGG 1 cut(s) 1353
BmuI ACTGGG 1 cut(s) 1353
BplI GAGNNNNNCTC 4 cut(s) 824, 856, 1253, 1285
BpmI CTGGAG 3 cut(s) 417, 501, 1353
Bpu10I CCTNAGC 1 cut(s) 348
BpuMI CCSGG 1 cut(s) 126
BsaAI YACGTR 1 cut(s) 770
BsaJI CCNNGG 2 cut(s) 124, 478
BsaXI ACNNNNNCTCC 2 cut(s) 474, 504
Bsc4I CCNNNNNNNGG 3 cut(s) 278, 485, 1121
Bse1I ACTGG 4 cut(s) 47, 418, 1359, 1429
Bse3DI GCAATG 1 cut(s) 1196
BseBI CCWGG 4 cut(s) 158, 273, 480, 520
BseDI CCNNGG 2 cut(s) 124, 478
BseGI GGATG 3 cut(s) 38, 940, 1390
BseLI CCNNNNNNNGG 3 cut(s) 278, 485, 1121
BseMI GCAATG 1 cut(s) 1196
BseMII CTCAG 9 cut(s) 39, 227, 339, 905, 1164, 1251, 1259, 1366, 1443
BseNI ACTGG 4 cut(s) 47, 418, 1359, 1429
BseRI GAGGAG 1 cut(s) 848
BseSI GKGCMC 1 cut(s) 209
BseXI GCAGC 6 cut(s) 355, 356, 388, 925, 1123, 1126
BseYI CCCAGC 1 cut(s) 1278
BsgI GTGCAG 1 cut(s) 699
Bsh1236I CGCG 1 cut(s) 1077
BshFI GGCC 1 cut(s) 68
BsiHKAI GWGCWC 2 cut(s) 840, 1440
BsiSI CCGG 1 cut(s) 126
BslFI GGGAC 1 cut(s) 1341
BslI CCNNNNNNNGG 3 cut(s) 278, 485, 1121
BsmAI GTCTC 1 cut(s) 29
BsmFI GGGAC 1 cut(s) 1341
BsmI GAATGC 2 cut(s) 289, 1341
BsnI GGCC 1 cut(s) 68
Bsp1286I GDGCHC 3 cut(s) 209, 840, 1440
Bsp143I GATC 3 cut(s) 218, 334, 685
BspACI CCGC 1 cut(s) 140
BspANI GGCC 1 cut(s) 68
BspCNI CTCAG 9 cut(s) 38, 226, 340, 904, 1165, 1252, 1258, 1365, 1444
BspFNI CGCG 1 cut(s) 1077
BspHI TCATGA 2 cut(s) 1345, 1480
BspLI GGNNCC 2 cut(s) 631, 710
BspMAI CTGCAG 1 cut(s) 727
BspPI GGATC 2 cut(s) 329, 693
BsrDI GCAATG 1 cut(s) 1196
BsrI ACTGG 4 cut(s) 47, 418, 1359, 1429
BssECI CCNNGG 2 cut(s) 124, 478
BssMI GATC 3 cut(s) 218, 334, 685
Bst2UI CCWGG 4 cut(s) 158, 273, 480, 520
Bst4CI ACNGT 3 cut(s) 410, 922, 1128
Bst6I CTCTTC 1 cut(s) 319
BstAPI GCANNNNNTGC 1 cut(s) 722
BstBAI YACGTR 1 cut(s) 770
BstF5I GGATG 3 cut(s) 38, 940, 1390
BstFNI CGCG 1 cut(s) 1077
BstKTI GATC 3 cut(s) 221, 337, 688
BstMAI GTCTC 1 cut(s) 29
BstMBI GATC 3 cut(s) 218, 334, 685
BstMWI GCNNNNNNNGC 4 cut(s) 65, 349, 722, 967
BstNI CCWGG 4 cut(s) 158, 273, 480, 520
BstNSI RCATGY 2 cut(s) 974, 1372
BstSCI CCNGG 5 cut(s) 124, 156, 271, 478, 518
BstSFI CTRYAG 1 cut(s) 723
BstSLI GKGCMC 1 cut(s) 209
BstSNI TACGTA 1 cut(s) 770
BstUI CGCG 1 cut(s) 1077
BstV1I GCAGC 6 cut(s) 355, 356, 388, 925, 1123, 1126
BstX2I RGATCY 3 cut(s) 218, 334, 685
BstXI CCANNNNNNTGG 2 cut(s) 479, 1411
BstYI RGATCY 3 cut(s) 218, 334, 685
BsuI GTATCC 1 cut(s) 1276
BsuRI GGCC 1 cut(s) 68
BtsCI GGATG 3 cut(s) 38, 940, 1390
BtsI GCAGTG 2 cut(s) 207, 809
BtsIMutI CAGTG 6 cut(s) 207, 757, 809, 1067, 1257, 1366
CciI TCATGA 2 cut(s) 1345, 1480
Cfr13I GGNCC 3 cut(s) 67, 383, 434
Csp6I GTAC 4 cut(s) 356, 411, 417, 1265
CviQI GTAC 4 cut(s) 356, 411, 417, 1265
DpnI GATC 3 cut(s) 220, 336, 687
DpnII GATC 3 cut(s) 218, 334, 685
DriI GACNNNNNGTC 1 cut(s) 28
Eam1104I CTCTTC 1 cut(s) 319
Eam1105I GACNNNNNGTC 1 cut(s) 28
EarI CTCTTC 1 cut(s) 319
Ecl136II GAGCTC 1 cut(s) 1438
Eco105I TACGTA 1 cut(s) 770
Eco24I GRGCYC 1 cut(s) 1440
Eco47I GGWCC 2 cut(s) 383, 434
Eco53kI GAGCTC 1 cut(s) 1438
Eco57I CTGAAG 1 cut(s) 733
EcoICRI GAGCTC 1 cut(s) 1438
EcoO109I RGGNCCY 1 cut(s) 383
EcoRI GAATTC 1 cut(s) 944
EcoRII CCWGG 4 cut(s) 156, 271, 478, 518
EcoT22I ATGCAT 1 cut(s) 309
EcoT38I GRGCYC 1 cut(s) 1440
FaqI GGGAC 1 cut(s) 1341
Fnu4HI GCNGC 7 cut(s) 141, 344, 370, 402, 939, 1137, 1140
FokI GGATG 3 cut(s) 25, 947, 1377
FriOI GRGCYC 1 cut(s) 1440
Fsp4HI GCNGC 7 cut(s) 141, 344, 370, 402, 939, 1137, 1140
FspBI CTAG 1 cut(s) 60
GluI GCNGC 7 cut(s) 141, 344, 370, 402, 939, 1137, 1140
GsaI CCCAGC 1 cut(s) 1282
GsuI CTGGAG 3 cut(s) 417, 501, 1353
HaeIII GGCC 1 cut(s) 68
HapII CCGG 1 cut(s) 126
HincII GTYRAC 2 cut(s) 170, 199
HindII GTYRAC 2 cut(s) 170, 199
HindIII AAGCTT 1 cut(s) 729
HinfI GANTC 7 cut(s) 23, 29, 233, 650, 1039, 1107, 1241
HpaI GTTAAC 1 cut(s) 199
HpaII CCGG 1 cut(s) 126
HphI GGTGA 2 cut(s) 432, 1114
Hpy166II GTNNAC 3 cut(s) 170, 199, 1267
Hpy188I TCNGA 9 cut(s) 28, 34, 75, 102, 216, 620, 832, 1240, 1313
Hpy8I GTNNAC 3 cut(s) 170, 199, 1267
HpyAV CCTTC 7 cut(s) 80, 396, 447, 474, 675, 757, 1001
HpyCH4III ACNGT 3 cut(s) 410, 922, 1128
HpyCH4IV ACGT 1 cut(s) 769
HpyF10VI GCNNNNNNNGC 4 cut(s) 65, 349, 722, 967
HpySE526I ACGT 1 cut(s) 769
KspAI GTTAAC 1 cut(s) 199
Kzo9I GATC 3 cut(s) 218, 334, 685
LmnI GCTCC 6 cut(s) 398, 538, 635, 835, 1022, 1435
Lsp1109I GCAGC 6 cut(s) 355, 356, 388, 925, 1123, 1126
MaeI CTAG 1 cut(s) 60
MaeII ACGT 1 cut(s) 769
MaeIII GTNAC 4 cut(s) 297, 978, 1178, 1250
MalI GATC 3 cut(s) 220, 336, 687
MboI GATC 3 cut(s) 218, 334, 685
MboII GAAGA 6 cut(s) 228, 306, 381, 650, 897, 1012
MfeI CAATTG 4 cut(s) 18, 429, 585, 1202
MflI RGATCY 3 cut(s) 218, 334, 685
MhlI GDGCHC 3 cut(s) 209, 840, 1440
MlyI GAGTC 2 cut(s) 17, 38
MmeI TCCRAC 1 cut(s) 1413
Mph1103I ATGCAT 1 cut(s) 309
MseI TTAA 5 cut(s) 135, 198, 1208, 1224, 1524
MslI CAYNNNNRTG 4 cut(s) 669, 920, 1380, 1485
MspI CCGG 1 cut(s) 126
MspR9I CCNGG 5 cut(s) 126, 158, 273, 480, 520
MunI CAATTG 4 cut(s) 18, 429, 585, 1202
Mva1269I GAATGC 2 cut(s) 289, 1341
MvaI CCWGG 4 cut(s) 158, 273, 480, 520
MvnI CGCG 1 cut(s) 1077
MwoI GCNNNNNNNGC 4 cut(s) 65, 349, 722, 967
NciI CCSGG 1 cut(s) 126
NdeII GATC 3 cut(s) 218, 334, 685
NlaIV GGNNCC 2 cut(s) 631, 710
NmeAIII GCCGAG 1 cut(s) 1140
NmuCI GTSAC 4 cut(s) 297, 978, 1178, 1250
NsiI ATGCAT 1 cut(s) 309
NspI RCATGY 2 cut(s) 974, 1372
OliI CACNNNNGTG 1 cut(s) 920
PagI TCATGA 2 cut(s) 1345, 1480
PciI ACATGT 1 cut(s) 1368
PctI GAATGC 2 cut(s) 289, 1341
PfeI GAWTC 5 cut(s) 233, 650, 1039, 1107, 1241
PkrI GCNGC 7 cut(s) 142, 345, 371, 403, 940, 1138, 1141
PleI GAGTC 2 cut(s) 17, 37
PpsI GAGTC 2 cut(s) 17, 37
Ppu21I YACGTR 1 cut(s) 770
PpuMI RGGWCCY 1 cut(s) 383
PscI ACATGT 1 cut(s) 1368
Psp124BI GAGCTC 1 cut(s) 1440
Psp5II RGGWCCY 1 cut(s) 383
Psp6I CCWGG 4 cut(s) 156, 271, 478, 518
PspFI CCCAGC 1 cut(s) 1278
PspGI CCWGG 4 cut(s) 156, 271, 478, 518
PspN4I GGNNCC 2 cut(s) 631, 710
PspPI GGNCC 3 cut(s) 67, 383, 434
PspPPI RGGWCCY 1 cut(s) 383
PstI CTGCAG 1 cut(s) 727
PsuI RGATCY 3 cut(s) 218, 334, 685
RsaI GTAC 4 cut(s) 357, 412, 418, 1266
RsaNI GTAC 4 cut(s) 356, 411, 417, 1265
RseI CAYNNNNRTG 4 cut(s) 669, 920, 1380, 1485
SacI GAGCTC 1 cut(s) 1440
SaqAI TTAA 5 cut(s) 135, 198, 1208, 1224, 1524
SatI GCNGC 7 cut(s) 141, 344, 370, 402, 939, 1137, 1140
Sau3AI GATC 3 cut(s) 218, 334, 685
Sau96I GGNCC 3 cut(s) 67, 383, 434
ScaI AGTACT 1 cut(s) 412
SchI GAGTC 2 cut(s) 17, 38
ScrFI CCNGG 5 cut(s) 126, 158, 273, 480, 520
SduI GDGCHC 3 cut(s) 209, 840, 1440
SfcI CTRYAG 1 cut(s) 723
SinI GGWCC 2 cut(s) 383, 434
SmiMI CAYNNNNRTG 4 cut(s) 669, 920, 1380, 1485
SnaBI TACGTA 1 cut(s) 770
SsiI CCGC 1 cut(s) 140
SspMI CTAG 1 cut(s) 60
SstI GAGCTC 1 cut(s) 1440
StyD4I CCNGG 5 cut(s) 124, 156, 271, 478, 518
TaaI ACNGT 3 cut(s) 410, 922, 1128
TaiI ACGT 1 cut(s) 772
TaqI TCGA 2 cut(s) 163, 862
TatI WGTACW 2 cut(s) 355, 410
TauI GCSGC 1 cut(s) 143
TfiI GAWTC 5 cut(s) 233, 650, 1039, 1107, 1241
Tru1I TTAA 5 cut(s) 135, 198, 1208, 1224, 1524
Tru9I TTAA 5 cut(s) 135, 198, 1208, 1224, 1524
TscAI CASTG 6 cut(s) 214, 757, 816, 1067, 1264, 1366
TseFI GTSAC 4 cut(s) 297, 978, 1178, 1250
TseI GCWGC 6 cut(s) 343, 369, 401, 938, 1136, 1139
Tsp45I GTSAC 4 cut(s) 297, 978, 1178, 1250
TspDTI ATGAA 7 cut(s) 17, 281, 897, 937, 1185, 1334, 1362
TspGWI ACGGA 2 cut(s) 721, 1232
TspRI CASTG 6 cut(s) 214, 757, 816, 1067, 1264, 1366
VpaK11BI GGWCC 2 cut(s) 383, 434
XapI RAATTY 4 cut(s) 524, 874, 883, 944
XceI RCATGY 2 cut(s) 974, 1372
XcmI CCANNNNNNNNNTGG 1 cut(s) 1118
XspI CTAG 1 cut(s) 60
ZrmI AGTACT 1 cut(s) 412
Zsp2I ATGCAT 1 cut(s) 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.