Prupe.1G005200_v2.0.a1

UPF0098 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Reverse (-)
460390 .. 460867
478 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G005200.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 303 bp
ATGGCAGCTAGCAATGAATTCAGGTTGACATCACCTGGAATAGACCATGAAGGAAGACTGCCCAGAAAGTACACATTAGAAGTAACCAAGAATCTGGCTCTTGCGGTGCAGGATATTGATGCCCCGGAACCAAAATACCCAATTGTATTGTGGACCCATTGGTTGGTAGTGAACATTCAACCAGTTTTGGAGGTTGCCATGCATGATCCTAGTTTCAAGTTCAAGCTCTATGCTTTGGATGATAAAATGCACCTTGGCAACAAGGTGACGAAGGAGAAGCTCTTAGAGACAATTGACGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PBP

Protein Analysis

101

Amino Acids

11.41

Weight (kDa)

6.04

Isoelectric Point (pI)

45.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 163
AciI CCGC 1 cut(s) 104
AclWI GGATC 1 cut(s) 200
AcsI RAATTY 1 cut(s) 17
AfaI GTAC 1 cut(s) 71
AfiI CCNNNNNNNGG 1 cut(s) 163
AgsI TTSAA 3 cut(s) 179, 217, 223
AjnI CCWGG 1 cut(s) 34
AluBI AGCT 3 cut(s) 8, 226, 280
AluI AGCT 3 cut(s) 8, 226, 280
Alw26I GTCTC 1 cut(s) 281
AlwI GGATC 1 cut(s) 200
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 1 cut(s) 17
AspS9I GGNCC 1 cut(s) 153
AsuC2I CCSGG 1 cut(s) 125
AsuHPI GGTGA 2 cut(s) 24, 277
AsuNHI GCTAGC 1 cut(s) 8
AvaII GGWCC 1 cut(s) 153
BbsI GAAGAC 1 cut(s) 61
BbvI GCAGC 1 cut(s) 17
BciT130I CCWGG 1 cut(s) 36
BcnI CCSGG 1 cut(s) 125
BcoDI GTCTC 1 cut(s) 281
BfaI CTAG 2 cut(s) 9, 210
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 2 cut(s) 36, 125
Bme18I GGWCC 1 cut(s) 153
BmgT120I GGNCC 1 cut(s) 153
BmiI GGNNCC 2 cut(s) 129, 155
BmrFI CCNGG 2 cut(s) 36, 125
BmsI GCATC 1 cut(s) 109
BmtI GCTAGC 1 cut(s) 12
BpiI GAAGAC 1 cut(s) 61
BpuMI CCSGG 1 cut(s) 125
BsaJI CCNNGG 2 cut(s) 123, 253
Bsc4I CCNNNNNNNGG 1 cut(s) 163
Bse1I ACTGG 1 cut(s) 182
Bse3DI GCAATG 1 cut(s) 19
BseBI CCWGG 1 cut(s) 36
BseDI CCNNGG 2 cut(s) 123, 253
BseGI GGATG 1 cut(s) 244
BseLI CCNNNNNNNGG 1 cut(s) 163
BseMI GCAATG 1 cut(s) 19
BseNI ACTGG 1 cut(s) 182
BseXI GCAGC 1 cut(s) 17
BsgI GTGCAG 1 cut(s) 128
BsiSI CCGG 1 cut(s) 125
BslI CCNNNNNNNGG 1 cut(s) 163
BsmAI GTCTC 1 cut(s) 281
Bsp143I GATC 1 cut(s) 205
BspACI CCGC 1 cut(s) 104
BspLI GGNNCC 2 cut(s) 129, 155
BspOI GCTAGC 1 cut(s) 12
BspPI GGATC 1 cut(s) 200
BsrDI GCAATG 1 cut(s) 19
BsrI ACTGG 1 cut(s) 182
BssECI CCNNGG 2 cut(s) 123, 253
BssMI GATC 1 cut(s) 205
BssT1I CCWWGG 1 cut(s) 253
Bst2UI CCWGG 1 cut(s) 36
BstC8I GCNNGC 1 cut(s) 10
BstDEI CTNAG 1 cut(s) 283
BstF5I GGATG 1 cut(s) 244
BstKTI GATC 1 cut(s) 208
BstMAI GTCTC 1 cut(s) 281
BstMBI GATC 1 cut(s) 205
BstNI CCWGG 1 cut(s) 36
BstSCI CCNGG 2 cut(s) 34, 123
BstV1I GCAGC 1 cut(s) 17
BstV2I GAAGAC 1 cut(s) 61
BstXI CCANNNNNNTGG 1 cut(s) 94
BtsCI GGATG 1 cut(s) 244
Cac8I GCNNGC 1 cut(s) 10
Cfr13I GGNCC 1 cut(s) 153
Csp6I GTAC 1 cut(s) 70
CviAII CATG 3 cut(s) 47, 199, 203
CviJI RGCY 4 cut(s) 8, 98, 226, 280
CviKI_1 RGCY 4 cut(s) 8, 98, 226, 280
CviQI GTAC 1 cut(s) 70
DdeI CTNAG 1 cut(s) 283
DpnI GATC 1 cut(s) 207
DpnII GATC 1 cut(s) 205
Eco130I CCWWGG 1 cut(s) 253
Eco47I GGWCC 1 cut(s) 153
EcoRI GAATTC 1 cut(s) 17
EcoRII CCWGG 1 cut(s) 34
EcoT14I CCWWGG 1 cut(s) 253
EcoT22I ATGCAT 1 cut(s) 204
ErhI CCWWGG 1 cut(s) 253
FaeI CATG 3 cut(s) 50, 202, 206
FaiI YATR 4 cut(s) 48, 200, 204, 231
FatI CATG 3 cut(s) 46, 198, 202
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 1 cut(s) 251
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 2 cut(s) 9, 210
GluI GCNGC 1 cut(s) 6
HapII CCGG 1 cut(s) 125
Hin1II CATG 3 cut(s) 50, 202, 206
HincII GTYRAC 1 cut(s) 27
HindII GTYRAC 1 cut(s) 27
HinfI GANTC 1 cut(s) 91
HpaII CCGG 1 cut(s) 125
HphI GGTGA 2 cut(s) 24, 277
Hpy166II GTNNAC 4 cut(s) 27, 72, 153, 172
Hpy8I GTNNAC 4 cut(s) 27, 72, 153, 172
HpyAV CCTTC 2 cut(s) 44, 265
HpyCH4V TGCA 3 cut(s) 109, 202, 250
HpyF3I CTNAG 1 cut(s) 283
Hsp92II CATG 3 cut(s) 50, 202, 206
Kzo9I GATC 1 cut(s) 205
LpnPI CCDG 8 cut(s) 7, 21, 48, 76, 80, 95, 138, 195
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 1 cut(s) 109
MaeI CTAG 2 cut(s) 9, 210
MaeIII GTNAC 2 cut(s) 82, 265
MalI GATC 1 cut(s) 207
MboI GATC 1 cut(s) 205
MboII GAAGA 1 cut(s) 66
MfeI CAATTG 2 cut(s) 141, 291
MluCI AATT 3 cut(s) 17, 141, 291
MnlI CCTC 1 cut(s) 184
Mph1103I ATGCAT 1 cut(s) 204
MspI CCGG 1 cut(s) 125
MspR9I CCNGG 2 cut(s) 36, 125
MunI CAATTG 2 cut(s) 141, 291
MvaI CCWGG 1 cut(s) 36
NciI CCSGG 1 cut(s) 125
NdeII GATC 1 cut(s) 205
NheI GCTAGC 1 cut(s) 8
NlaIII CATG 3 cut(s) 50, 202, 206
NlaIV GGNNCC 2 cut(s) 129, 155
NmuCI GTSAC 1 cut(s) 265
NsiI ATGCAT 1 cut(s) 204
PfeI GAWTC 1 cut(s) 91
PflMI CCANNNNNTGG 1 cut(s) 163
PkrI GCNGC 1 cut(s) 7
Psp6I CCWGG 1 cut(s) 34
PspGI CCWGG 1 cut(s) 34
PspN4I GGNNCC 2 cut(s) 129, 155
PspPI GGNCC 1 cut(s) 153
RsaI GTAC 1 cut(s) 71
RsaNI GTAC 1 cut(s) 70
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 1 cut(s) 205
Sau96I GGNCC 1 cut(s) 153
ScrFI CCNGG 2 cut(s) 36, 125
SetI ASST 8 cut(s) 10, 26, 37, 195, 228, 255, 267, 282
SfaNI GCATC 1 cut(s) 109
SinI GGWCC 1 cut(s) 153
Sse9I AATT 3 cut(s) 17, 141, 291
SsiI CCGC 1 cut(s) 104
SspMI CTAG 2 cut(s) 9, 210
StyD4I CCNGG 2 cut(s) 34, 123
StyI CCWWGG 1 cut(s) 253
TasI AATT 3 cut(s) 17, 141, 291
TatI WGTACW 1 cut(s) 69
TfiI GAWTC 1 cut(s) 91
TseFI GTSAC 1 cut(s) 265
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 1 cut(s) 265
TspDTI ATGAA 2 cut(s) 30, 63
Van91I CCANNNNNTGG 1 cut(s) 163
VpaK11BI GGWCC 1 cut(s) 153
XapI RAATTY 1 cut(s) 17
XcmI CCANNNNNNNNNTGG 1 cut(s) 147
XspI CTAG 2 cut(s) 9, 210
Zsp2I ATGCAT 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.