Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

478563 .. 482046

Gene Structure 3484 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G005500.1_v2.0.a1.CDS.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGAATTATAGTGGATCAACGAACGAGGACATCATCACCTTCGCAACCTACACCTCTAAAGGCTCTAACTGCCAAGTGGCTATGCTCATTACGGTCGATGATTTGAATCAATCTACAGATATTATAATCCTTGATGTCCCAACAGTAGAAGGACGCTTGATGCTTGTGGACATGGCTGGCTCTGAAAATATTGAGCAAGCTGGCCAAATTGGATTTAAGGCAAAAATGCAGACTGCAAAGATCAACCAAGGAAACATAGCTCTCAAAAGAGTGGTTGAATCCATTGCCAATGGTGATTCTCATGTGACGCAGCACAAGCACAAAGGTTTCAAGCGAAACTTTGAAATTTATTGGAAAATTAACTACCAAACTTTAACTGCAGTTTTGGAAGGCCAAACGACCTCAGAATGCCAAAATCCACCTTATGTCACAGCAAAGCTTGACAGCAAACTGACCATGCTTCTACAGGATTCTTTCGAAGATGCTAAAACAAAAATTTTAATGGTACTGTGTGCAAGCCCAGACCCAAAGGAAATACACAAGACAATCTCCACTCTTGAATATGGTGCAAAAGCAAAATGTATTGTCCGTGATCCTCATACGCCAATCAAGGATAAAATTGGGACTGAAGATTCATCTGCTGTTATTTTAGGATCAAGGATTGCTGCCATGGATGAATTCATCCTTAAACTGCAAAGGGAAAATAAGCTCAAAGAGAAAGAGCGAAATGAAGCACACAGGGAGTTACAGAAGAAAGAAGAAGAGGTTGCTGCACTGAGAGCTAAATTTGAGCTTGTGGAAGGGACGGGATCTGGGAAAAAGGAGGAAGAAATCAACTTGAAGGTGACTGAATTGGAAAAGAAGTTGGAGGAATGCCAGCGTATGGAAAATGAGTTTGTTGAATTGGAGAGGAAGAGAATGGAAGAAAGGATATTGCAGCAGCAGCAGGAAGTTGAAATACTGAGGCGGCGGTTGGAGAAAATTGAGCTTGAGCTATGCCGCTCAGGTGATGGAAATGTTGAATATTTGGATTGCAAAGGGAGCAAGAAAATGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005871 GO:0005875 GO:0006810 GO:0006928 GO:0007017 GO:0007018 GO:0008017 GO:0008092 GO:0008150 GO:0008574 GO:0009524 GO:0009987 GO:0010970 GO:0015630 GO:0015631 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030705 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0047496 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0072384 GO:0099111 GO:0099518 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

353

Amino Acids

40.04

Weight (kDa)

5.76

Isoelectric Point (pI)

48.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	125
AccB7I	CCANNNNNTGG	1 cut(s)	883
AccBSI	CCGCTC	1 cut(s)	1002
AciI	CCGC	3 cut(s)	967, 970, 1000
AclWI	GGATC	4 cut(s)	22, 587, 661, 817
AcoI	YGGCCR	1 cut(s)	202
AcsI	RAATTY	4 cut(s)	345, 495, 677, 785
AcuI	CTGAAG	1 cut(s)	648
AfaI	GTAC	2 cut(s)	507, 1055
AfiI	CCNNNNNNNGG	1 cut(s)	883
AgsI	TTSAA	9 cut(s)	106, 278, 331, 344, 560, 841, 902, 956, 1022
AluBI	AGCT	8 cut(s)	200, 260, 439, 709, 782, 793, 988, 994
AluI	AGCT	8 cut(s)	200, 260, 439, 709, 782, 793, 988, 994
AlwI	GGATC	4 cut(s)	22, 587, 661, 817
AoxI	GGCC	2 cut(s)	202, 391
ApeKI	GCWGC	6 cut(s)	310, 665, 770, 937, 940, 943
ApoI	RAATTY	4 cut(s)	345, 495, 677, 785
AsuHPI	GGTGA	4 cut(s)	28, 305, 856, 1019
AsuII	TTCGAA	1 cut(s)	477
BalI	TGGCCA	1 cut(s)	204
BarI	GAAGNNNNNNTAC	2 cut(s)	942, 974
BbvI	GCAGC	6 cut(s)	322, 652, 757, 949, 952, 955
BccI	CCATC	1 cut(s)	1004
BfmI	CTRYAG	3 cut(s)	114, 378, 464
BisI	GCNGC	8 cut(s)	311, 666, 771, 938, 941, 944, 968, 1000
BlsI	GCNGC	8 cut(s)	312, 667, 772, 939, 942, 945, 969, 1001
BmsI	GCATC	2 cut(s)	150, 472
Bpu10I	CCTNAGC	1 cut(s)	1003
Bpu14I	TTCGAA	1 cut(s)	477
BpuEI	CTTGAG	1 cut(s)	1010
BsaBI	GATNNNNATC	1 cut(s)	105
BsaJI	CCNNGG	2 cut(s)	247, 669
Bsc4I	CCNNNNNNNGG	1 cut(s)	883
Bse3DI	GCAATG	1 cut(s)	282
Bse8I	GATNNNNATC	1 cut(s)	105
BseDI	CCNNGG	2 cut(s)	247, 669
BseGI	GGATG	2 cut(s)	679, 681
BseJI	GATNNNNATC	1 cut(s)	105
BseLI	CCNNNNNNNGG	1 cut(s)	883
BseMI	GCAATG	1 cut(s)	282
BseMII	CTCAG	4 cut(s)	417, 767, 953, 1017
BseXI	GCAGC	6 cut(s)	322, 652, 757, 949, 952, 955
BsgI	GTGCAG	1 cut(s)	756
Bsh1285I	CGRYCG	1 cut(s)	96
BshFI	GGCC	2 cut(s)	204, 393
BsiEI	CGRYCG	1 cut(s)	96
BslFI	GGGAC	3 cut(s)	122, 637, 817
BslI	CCNNNNNNNGG	1 cut(s)	883
BsmFI	GGGAC	3 cut(s)	122, 637, 817
BsmI	GAATGC	2 cut(s)	413, 878
BsnI	GGCC	2 cut(s)	204, 393
Bsp119I	TTCGAA	1 cut(s)	477
Bsp143I	GATC	5 cut(s)	14, 240, 592, 653, 809
Bsp19I	CCATGG	1 cut(s)	669
BspACI	CCGC	3 cut(s)	967, 970, 1000
BspANI	GGCC	2 cut(s)	204, 393
BspCNI	CTCAG	4 cut(s)	416, 768, 954, 1016
BspMAI	CTGCAG	1 cut(s)	382
BspPI	GGATC	4 cut(s)	22, 587, 661, 817
BspT104I	TTCGAA	1 cut(s)	477
BsrBI	CCGCTC	1 cut(s)	1002
BsrDI	GCAATG	1 cut(s)	282
BssECI	CCNNGG	2 cut(s)	247, 669
BssMI	GATC	5 cut(s)	14, 240, 592, 653, 809
BssT1I	CCWWGG	2 cut(s)	247, 669
Bst4CI	ACNGT	3 cut(s)	94, 145, 510
Bst6I	CTCTTC	2 cut(s)	756, 908
BstBI	TTCGAA	1 cut(s)	477
BstC8I	GCNNGC	5 cut(s)	178, 198, 202, 517, 878
BstDEI	CTNAG	4 cut(s)	403, 776, 962, 1003
BstDSI	CCRYGG	1 cut(s)	669
BstF5I	GGATG	2 cut(s)	679, 681
BstKTI	GATC	5 cut(s)	17, 243, 595, 656, 812
BstMBI	GATC	5 cut(s)	14, 240, 592, 653, 809
BstMCI	CGRYCG	1 cut(s)	96
BstMWI	GCNNNNNNNGC	5 cut(s)	69, 316, 779, 943, 1041
BstSFI	CTRYAG	3 cut(s)	114, 378, 464
BstV1I	GCAGC	6 cut(s)	322, 652, 757, 949, 952, 955
BstX2I	RGATCY	1 cut(s)	809
BstYI	RGATCY	1 cut(s)	809
BsuRI	GGCC	2 cut(s)	204, 393
BtgI	CCRYGG	1 cut(s)	669
BtsCI	GGATG	2 cut(s)	679, 681
BtsIMutI	CAGTG	1 cut(s)	773
Cac8I	GCNNGC	5 cut(s)	178, 198, 202, 517, 878
CseI	GACGC	2 cut(s)	162, 316
Csp6I	GTAC	2 cut(s)	506, 1054
CviAII	CATG	4 cut(s)	172, 302, 457, 670
CviQI	GTAC	2 cut(s)	506, 1054
DdeI	CTNAG	4 cut(s)	403, 776, 962, 1003
DpnI	GATC	5 cut(s)	16, 242, 594, 655, 811
DpnII	GATC	5 cut(s)	14, 240, 592, 653, 809
EaeI	YGGCCR	1 cut(s)	202
Eam1104I	CTCTTC	2 cut(s)	756, 908
EarI	CTCTTC	2 cut(s)	756, 908
Eco130I	CCWWGG	2 cut(s)	247, 669
Eco57I	CTGAAG	1 cut(s)	648
EcoRI	GAATTC	1 cut(s)	677
EcoT14I	CCWWGG	2 cut(s)	247, 669
ErhI	CCWWGG	2 cut(s)	247, 669
FaeI	CATG	4 cut(s)	175, 305, 460, 673
FalI	AAGNNNNNCTT	2 cut(s)	323, 355
FaqI	GGGAC	3 cut(s)	122, 637, 817
FatI	CATG	4 cut(s)	171, 301, 456, 669
Fnu4HI	GCNGC	8 cut(s)	311, 666, 771, 938, 941, 944, 968, 1000
FokI	GGATG	2 cut(s)	668, 686
Fsp4HI	GCNGC	8 cut(s)	311, 666, 771, 938, 941, 944, 968, 1000
GluI	GCNGC	8 cut(s)	311, 666, 771, 938, 941, 944, 968, 1000
HaeIII	GGCC	2 cut(s)	204, 393
HgaI	GACGC	2 cut(s)	162, 316
Hin1II	CATG	4 cut(s)	175, 305, 460, 673
HindIII	AAGCTT	1 cut(s)	437
HinfI	GANTC	5 cut(s)	106, 278, 296, 470, 632
HphI	GGTGA	4 cut(s)	28, 305, 856, 1019
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188I	TCNGA	2 cut(s)	184, 406
Hpy188III	TCNNGA	1 cut(s)	557
Hpy8I	GTNNAC	1 cut(s)	169
HpyAV	CCTTC	5 cut(s)	49, 143, 383, 794, 835
HpyCH4III	ACNGT	3 cut(s)	94, 145, 510
HpyCH4V	TGCA	9 cut(s)	229, 236, 380, 515, 569, 694, 773, 937, 1035
HpyF10VI	GCNNNNNNNGC	5 cut(s)	69, 316, 779, 943, 1041
HpyF3I	CTNAG	4 cut(s)	403, 776, 962, 1003
Hsp92II	CATG	4 cut(s)	175, 305, 460, 673
Kzo9I	GATC	5 cut(s)	14, 240, 592, 653, 809
LmnI	GCTCC	1 cut(s)	1041
LpnPI	CCDG	9 cut(s)	162, 186, 452, 534, 724, 798, 890, 932, 990
Lsp1109I	GCAGC	6 cut(s)	322, 652, 757, 949, 952, 955
LweI	GCATC	2 cut(s)	150, 472
MaeIII	GTNAC	4 cut(s)	304, 427, 744, 844
MalI	GATC	5 cut(s)	16, 242, 594, 655, 811
MbiI	CCGCTC	1 cut(s)	1002
MboI	GATC	5 cut(s)	14, 240, 592, 653, 809
MboII	GAAGA	8 cut(s)	491, 641, 763, 770, 773, 839, 925, 935
MflI	RGATCY	1 cut(s)	809
MlsI	TGGCCA	1 cut(s)	204
MluNI	TGGCCA	1 cut(s)	204
MmeI	TCCRAC	2 cut(s)	846, 954
MnlI	CCTC	9 cut(s)	19, 64, 412, 606, 757, 817, 862, 903, 957
Mox20I	TGGCCA	1 cut(s)	204
MscI	TGGCCA	1 cut(s)	204
MseI	TTAA	5 cut(s)	216, 360, 374, 500, 687
Msp20I	TGGCCA	1 cut(s)	204
Mva1269I	GAATGC	2 cut(s)	413, 878
MwoI	GCNNNNNNNGC	5 cut(s)	69, 316, 779, 943, 1041
NcoI	CCATGG	1 cut(s)	669
NdeII	GATC	5 cut(s)	14, 240, 592, 653, 809
NlaIII	CATG	4 cut(s)	175, 305, 460, 673
NmuCI	GTSAC	3 cut(s)	304, 427, 844
NspV	TTCGAA	1 cut(s)	477
PctI	GAATGC	2 cut(s)	413, 878
PfeI	GAWTC	5 cut(s)	106, 278, 296, 470, 632
PflMI	CCANNNNNTGG	1 cut(s)	883
PkrI	GCNGC	8 cut(s)	312, 667, 772, 939, 942, 945, 969, 1001
PsiI	TTATAA	1 cut(s)	125
PstI	CTGCAG	1 cut(s)	382
PsuI	RGATCY	1 cut(s)	809
RsaI	GTAC	2 cut(s)	507, 1055
RsaNI	GTAC	2 cut(s)	506, 1054
SaqAI	TTAA	5 cut(s)	216, 360, 374, 500, 687
SatI	GCNGC	8 cut(s)	311, 666, 771, 938, 941, 944, 968, 1000
Sau3AI	GATC	5 cut(s)	14, 240, 592, 653, 809
SfaNI	GCATC	2 cut(s)	150, 472
SfcI	CTRYAG	3 cut(s)	114, 378, 464
SfuI	TTCGAA	1 cut(s)	477
SmlI	CTYRAG	1 cut(s)	989
SmoI	CTYRAG	1 cut(s)	989
SsiI	CCGC	3 cut(s)	967, 970, 1000
SspI	AATATT	2 cut(s)	190, 1025
StyI	CCWWGG	2 cut(s)	247, 669
TaaI	ACNGT	3 cut(s)	94, 145, 510
TaqI	TCGA	2 cut(s)	96, 477
TatI	WGTACW	1 cut(s)	1053
TauI	GCSGC	2 cut(s)	970, 1002
TfiI	GAWTC	5 cut(s)	106, 278, 296, 470, 632
Tru1I	TTAA	5 cut(s)	216, 360, 374, 500, 687
Tru9I	TTAA	5 cut(s)	216, 360, 374, 500, 687
TscAI	CASTG	1 cut(s)	780
TseFI	GTSAC	3 cut(s)	304, 427, 844
TseI	GCWGC	6 cut(s)	310, 665, 770, 937, 940, 943
Tsp45I	GTSAC	3 cut(s)	304, 427, 844
TspDTI	ATGAA	5 cut(s)	17, 624, 670, 690, 744
TspGWI	ACGGA	1 cut(s)	578
TspRI	CASTG	1 cut(s)	780
Van91I	CCANNNNNTGG	1 cut(s)	883
XapI	RAATTY	4 cut(s)	345, 495, 677, 785

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.