Prupe.1G009100_v2.0.a1

Paired amphipathic helix protein Sin3-like

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Forward (+)
734276 .. 734888
613 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G009100.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 372 bp
ATGAAAATCAAGTTCAAGCAAAGCCCAAGAGGAAAGGAACTTCCACAAAGTGCAAAGTGCAAAATGCCTGAGAAAAGTTTCAAAGATCCTGAGGAGGACATAAATTTAACAGATACTAGTATATCTGAAAAGGCGTTCCTTCTGTGCAAAAGAGTTAAGGAAAACTTTGGTGATGATGCAGACAAGTTTTCAGAATTCTTGGCGCAACTGCACATGTTTAGCCAACAAAGGGTCGATTTGACTGAGTTTTTAAACTTGGTGGACAACTTCGTTCGAGCCGACGAACGTCTTATGAACGATCTTGAGGATTTTTTGGAGAACTGCGGAAGGGCACAGAGCTATTGGTCGCGCAAGTGCAAACGTTTGAATTGA

Protein Analysis

124

Amino Acids

14.49

Weight (kDa)

6.6

Isoelectric Point (pI)

42.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 349
AciI CCGC 1 cut(s) 324
AclI AACGTT 1 cut(s) 361
AclWI GGATC 1 cut(s) 80
AcsI RAATTY 2 cut(s) 103, 194
AdeI CACNNNGTG 1 cut(s) 50
AfiI CCNNNNNNNGG 1 cut(s) 229
AflIII ACRYGT 1 cut(s) 213
AgsI TTSAA 3 cut(s) 16, 82, 367
AhlI ACTAGT 1 cut(s) 116
AluBI AGCT 1 cut(s) 339
AluI AGCT 1 cut(s) 339
AlwI GGATC 1 cut(s) 80
ApoI RAATTY 2 cut(s) 103, 194
Asp700I GAANNNNTTC 1 cut(s) 77
AspLEI GCGC 2 cut(s) 205, 351
AsuHPI GGTGA 1 cut(s) 182
AxyI CCTNAGG 1 cut(s) 90
BaeGI GKGCMC 1 cut(s) 334
BcuI ACTAGT 1 cut(s) 116
BfaI CTAG 1 cut(s) 117
BmsI GCATC 1 cut(s) 166
BoxI GACNNNNGTC 1 cut(s) 285
BpuEI CTTGAG 1 cut(s) 323
Bsc4I CCNNNNNNNGG 1 cut(s) 229
Bse21I CCTNAGG 1 cut(s) 90
BseLI CCNNNNNNNGG 1 cut(s) 229
BseMII CTCAG 3 cut(s) 60, 81, 234
BseRI GAGGAG 1 cut(s) 107
BseSI GKGCMC 1 cut(s) 334
BsgI GTGCAG 1 cut(s) 194
Bsh1236I CGCG 1 cut(s) 349
BslI CCNNNNNNNGG 1 cut(s) 229
Bsp1286I GDGCHC 1 cut(s) 334
Bsp143I GATC 2 cut(s) 85, 298
BspACI CCGC 1 cut(s) 324
BspCNI CTCAG 3 cut(s) 61, 82, 235
BspFNI CGCG 1 cut(s) 349
BspPI GGATC 1 cut(s) 80
BssMI GATC 2 cut(s) 85, 298
BstDEI CTNAG 3 cut(s) 69, 90, 243
BstFNI CGCG 1 cut(s) 349
BstHHI GCGC 2 cut(s) 205, 351
BstKTI GATC 2 cut(s) 88, 301
BstMBI GATC 2 cut(s) 85, 298
BstNSI RCATGY 1 cut(s) 217
BstPAI GACNNNNGTC 1 cut(s) 285
BstSLI GKGCMC 1 cut(s) 334
BstUI CGCG 1 cut(s) 349
BstX2I RGATCY 1 cut(s) 85
BstYI RGATCY 1 cut(s) 85
Bsu36I CCTNAGG 1 cut(s) 90
CfoI GCGC 2 cut(s) 205, 351
CviAII CATG 1 cut(s) 214
CviJI RGCY 4 cut(s) 24, 222, 278, 339
CviKI_1 RGCY 4 cut(s) 24, 222, 278, 339
DdeI CTNAG 3 cut(s) 69, 90, 243
DpnI GATC 2 cut(s) 87, 300
DpnII GATC 2 cut(s) 85, 298
DraI TTTAAA 1 cut(s) 252
DraIII CACNNNGTG 1 cut(s) 50
Eco81I CCTNAGG 1 cut(s) 90
EcoRI GAATTC 1 cut(s) 194
FaeI CATG 1 cut(s) 217
FaiI YATR 4 cut(s) 101, 122, 215, 293
FalI AAGNNNNNCTT 2 cut(s) 149, 181
FatI CATG 1 cut(s) 213
FspBI CTAG 1 cut(s) 117
GlaI GCGC 2 cut(s) 204, 350
HhaI GCGC 2 cut(s) 205, 351
Hin1II CATG 1 cut(s) 217
Hin6I GCGC 2 cut(s) 203, 349
HinP1I GCGC 2 cut(s) 203, 349
HphI GGTGA 1 cut(s) 182
Hpy166II GTNNAC 1 cut(s) 262
Hpy188I TCNGA 2 cut(s) 127, 193
Hpy188III TCNNGA 2 cut(s) 89, 302
Hpy8I GTNNAC 1 cut(s) 262
Hpy99I CGWCG 1 cut(s) 284
HpyAV CCTTC 2 cut(s) 149, 321
HpyCH4IV ACGT 2 cut(s) 286, 361
HpyCH4V TGCA 6 cut(s) 53, 60, 147, 179, 211, 357
HpyF3I CTNAG 3 cut(s) 69, 90, 243
HpySE526I ACGT 2 cut(s) 286, 361
Hsp92II CATG 1 cut(s) 217
HspAI GCGC 2 cut(s) 203, 349
Kzo9I GATC 2 cut(s) 85, 298
LpnPI CCDG 2 cut(s) 81, 102
LweI GCATC 1 cut(s) 166
MaeI CTAG 1 cut(s) 117
MaeII ACGT 2 cut(s) 286, 361
MalI GATC 2 cut(s) 87, 300
MboI GATC 2 cut(s) 85, 298
MflI RGATCY 1 cut(s) 85
MhlI GDGCHC 1 cut(s) 334
MluCI AATT 3 cut(s) 103, 194, 367
MnlI CCTC 4 cut(s) 23, 85, 88, 298
MroXI GAANNNNTTC 1 cut(s) 77
MseI TTAA 3 cut(s) 107, 156, 251
MvnI CGCG 1 cut(s) 349
NdeII GATC 2 cut(s) 85, 298
NlaIII CATG 1 cut(s) 217
NspI RCATGY 1 cut(s) 217
PciI ACATGT 1 cut(s) 213
PcsI WCGNNNNNNNCGW 1 cut(s) 276
PdmI GAANNNNTTC 1 cut(s) 77
PscI ACATGT 1 cut(s) 213
PshAI GACNNNNGTC 1 cut(s) 285
Psp1406I AACGTT 1 cut(s) 361
PsuI RGATCY 1 cut(s) 85
SaqAI TTAA 3 cut(s) 107, 156, 251
Sau3AI GATC 2 cut(s) 85, 298
SduI GDGCHC 1 cut(s) 334
SetI ASST 3 cut(s) 289, 341, 364
SfaNI GCATC 1 cut(s) 166
SmlI CTYRAG 1 cut(s) 302
SmoI CTYRAG 1 cut(s) 302
SpeI ACTAGT 1 cut(s) 116
Sse9I AATT 3 cut(s) 103, 194, 367
SsiI CCGC 1 cut(s) 324
SspMI CTAG 1 cut(s) 117
TaiI ACGT 2 cut(s) 289, 364
TaqI TCGA 2 cut(s) 234, 274
TasI AATT 3 cut(s) 103, 194, 367
Tru1I TTAA 3 cut(s) 107, 156, 251
Tru9I TTAA 3 cut(s) 107, 156, 251
TspDTI ATGAA 2 cut(s) 17, 308
XapI RAATTY 2 cut(s) 103, 194
XceI RCATGY 1 cut(s) 217
XmnI GAANNNNTTC 1 cut(s) 77
XspI CTAG 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.