Prupe.1G017100_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Forward (+)
1189584 .. 1190673
1090 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G017100.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 618 bp
ATGACACTCGTGGGCATGAGGAGATTGGTTTTCTCCGGGATTTCTTGGATTTTGGCATTTCTGCTTTTTGTTTCACCATCTGCAGTTAAAACCCAAATTCCTGGCTGCTCCTTGGTGGGTCTAGACCTTGAGCATTGCTTGAAACCAAGCAGTGGCTTTATTTCCATGGATGATACTTGCTGCACAGCCCTTAATCAACTCGTCCAAGCCGGGTATGGATGCTTGTGCTCTCTGATAGCAACATCCTCATCTCTGCCTCTTTTAGGCACCCCCCTTTCATTGCCATTATCAAATTGCTACATATCTGCACCTCCTTTAACTCAGTGTCAAGTGGTAGCTCCAAAGGCTGAAGGGTTTCCACCAAATGGCCCTCATGAGGAGATTGCACAACCTTCTGGTCCAACTGATCACCGAGTCGTGCCGGTGGCTCCGGTTGAAGTGCTGCAGGCTCCATTAAACTCAACCAGCAATGGAAATGCTACAGTGGTAGAATCAAAGCAGCCACCAGTGACCAAAAGCAGTGATGATATATCAAACAGAGAGGAAAAGACCAAGCTGCATCCACTGCCAATGCTTTTGCTTTCCTTGGCTCTTCAAGCTTGTAAAGCATTGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

206

Amino Acids

21.65

Weight (kDa)

6.05

Isoelectric Point (pI)

42.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 266
AccB7I CCANNNNNTGG 2 cut(s) 152, 365
AcsI RAATTY 1 cut(s) 96
AcuI CTGAAG 1 cut(s) 369
AfiI CCNNNNNNNGG 4 cut(s) 152, 263, 365, 376
AgsI TTSAA 3 cut(s) 142, 437, 596
AjnI CCWGG 1 cut(s) 100
AluBI AGCT 3 cut(s) 338, 556, 599
AluI AGCT 3 cut(s) 338, 556, 599
Alw21I GWGCWC 1 cut(s) 230
AoxI GGCC 1 cut(s) 367
ApeKI GCWGC 5 cut(s) 105, 180, 442, 499, 556
ApoI RAATTY 1 cut(s) 96
Asp700I GAANNNNTTC 1 cut(s) 354
AspS9I GGNCC 2 cut(s) 368, 398
AsuC2I CCSGG 2 cut(s) 37, 211
AsuHPI GGTGA 2 cut(s) 66, 401
AvaII GGWCC 1 cut(s) 398
BanI GGYRCC 1 cut(s) 266
BauI CACGAG 1 cut(s) 8
Bbv12I GWGCWC 1 cut(s) 230
BbvI GCAGC 5 cut(s) 92, 167, 429, 511, 543
BccI CCATC 1 cut(s) 85
BciT130I CCWGG 1 cut(s) 102
BclI TGATCA 1 cut(s) 406
BcnI CCSGG 2 cut(s) 37, 211
BfaI CTAG 1 cut(s) 122
BfmI CTRYAG 3 cut(s) 81, 443, 480
BisI GCNGC 5 cut(s) 106, 181, 443, 500, 557
BlsI GCNGC 5 cut(s) 107, 182, 444, 501, 558
Bme1390I CCNGG 3 cut(s) 37, 102, 211
Bme18I GGWCC 1 cut(s) 398
BmgT120I GGNCC 2 cut(s) 368, 398
BmiI GGNNCC 3 cut(s) 268, 429, 450
BmrFI CCNGG 3 cut(s) 37, 102, 211
BmsI GCATC 2 cut(s) 209, 568
BpuEI CTTGAG 1 cut(s) 149
BpuMI CCSGG 2 cut(s) 37, 211
BsaJI CCNNGG 3 cut(s) 111, 165, 585
BsaWI WCCGGW 1 cut(s) 430
Bsc4I CCNNNNNNNGG 4 cut(s) 152, 263, 365, 376
Bse118I RCCGGY 1 cut(s) 421
Bse1I ACTGG 1 cut(s) 506
Bse3DI GCAATG 3 cut(s) 133, 278, 475
BseBI CCWGG 1 cut(s) 102
BseDI CCNNGG 3 cut(s) 111, 165, 585
BseGI GGATG 4 cut(s) 175, 224, 242, 559
BseLI CCNNNNNNNGG 4 cut(s) 152, 263, 365, 376
BseMI GCAATG 3 cut(s) 133, 278, 475
BseMII CTCAG 1 cut(s) 335
BseNI ACTGG 1 cut(s) 506
BseRI GAGGAG 2 cut(s) 34, 392
BseXI GCAGC 5 cut(s) 92, 167, 429, 511, 543
BsgI GTGCAG 2 cut(s) 166, 291
BshFI GGCC 1 cut(s) 369
BshNI GGYRCC 1 cut(s) 266
BsiHKAI GWGCWC 1 cut(s) 230
BsiSI CCGG 4 cut(s) 36, 210, 422, 431
BslI CCNNNNNNNGG 4 cut(s) 152, 263, 365, 376
BsnI GGCC 1 cut(s) 369
Bsp1286I GDGCHC 1 cut(s) 230
Bsp143I GATC 1 cut(s) 406
Bsp19I CCATGG 1 cut(s) 165
BspANI GGCC 1 cut(s) 369
BspCNI CTCAG 1 cut(s) 334
BspHI TCATGA 1 cut(s) 373
BspLI GGNNCC 3 cut(s) 268, 429, 450
BspMAI CTGCAG 2 cut(s) 85, 447
BspQI GCTCTTC 1 cut(s) 597
BspT107I GGYRCC 1 cut(s) 266
BsrDI GCAATG 3 cut(s) 133, 278, 475
BsrFI RCCGGY 1 cut(s) 421
BsrI ACTGG 1 cut(s) 506
BssAI RCCGGY 1 cut(s) 421
BssECI CCNNGG 3 cut(s) 111, 165, 585
BssMI GATC 1 cut(s) 406
BssSI CACGAG 1 cut(s) 8
BssT1I CCWWGG 3 cut(s) 111, 165, 585
Bst2BI CACGAG 1 cut(s) 8
Bst2UI CCWGG 1 cut(s) 102
Bst4CI ACNGT 1 cut(s) 484
Bst6I CTCTTC 1 cut(s) 597
BstAPI GCANNNNNTGC 1 cut(s) 565
BstC8I GCNNGC 1 cut(s) 447
BstDEI CTNAG 1 cut(s) 321
BstDSI CCRYGG 1 cut(s) 165
BstENI CCTNNNNNAGG 1 cut(s) 261
BstF5I GGATG 4 cut(s) 175, 224, 242, 559
BstKTI GATC 1 cut(s) 409
BstMBI GATC 1 cut(s) 406
BstMWI GCNNNNNNNGC 4 cut(s) 344, 565, 596, 605
BstNI CCWGG 1 cut(s) 102
BstSCI CCNGG 3 cut(s) 35, 100, 209
BstSFI CTRYAG 3 cut(s) 81, 443, 480
BstV1I GCAGC 5 cut(s) 92, 167, 429, 511, 543
BstXI CCANNNNNNTGG 1 cut(s) 101
BsuRI GGCC 1 cut(s) 369
BtgI CCRYGG 1 cut(s) 165
BtsCI GGATG 4 cut(s) 175, 224, 242, 559
BtsI GCAGTG 3 cut(s) 157, 526, 563
BtsIMutI CAGTG 6 cut(s) 157, 329, 489, 513, 526, 563
Cac8I GCNNGC 1 cut(s) 447
CciI TCATGA 1 cut(s) 373
Cfr10I RCCGGY 1 cut(s) 421
Cfr13I GGNCC 2 cut(s) 368, 398
CviAII CATG 3 cut(s) 16, 166, 374
DdeI CTNAG 1 cut(s) 321
DpnI GATC 1 cut(s) 408
DpnII GATC 1 cut(s) 406
Eam1104I CTCTTC 1 cut(s) 597
EarI CTCTTC 1 cut(s) 597
Eco130I CCWWGG 3 cut(s) 111, 165, 585
Eco47I GGWCC 1 cut(s) 398
Eco57I CTGAAG 1 cut(s) 369
EcoNI CCTNNNNNAGG 1 cut(s) 261
EcoRII CCWGG 1 cut(s) 100
EcoT14I CCWWGG 3 cut(s) 111, 165, 585
ErhI CCWWGG 3 cut(s) 111, 165, 585
FaeI CATG 3 cut(s) 19, 169, 377
FaiI YATR 6 cut(s) 17, 167, 216, 302, 375, 530
FatI CATG 3 cut(s) 15, 165, 373
FbaI TGATCA 1 cut(s) 406
Fnu4HI GCNGC 5 cut(s) 106, 181, 443, 500, 557
FokI GGATG 4 cut(s) 182, 229, 231, 546
Fsp4HI GCNGC 5 cut(s) 106, 181, 443, 500, 557
FspBI CTAG 1 cut(s) 122
GluI GCNGC 5 cut(s) 106, 181, 443, 500, 557
HaeIII GGCC 1 cut(s) 369
HapII CCGG 4 cut(s) 36, 210, 422, 431
Hin1II CATG 3 cut(s) 19, 169, 377
HindIII AAGCTT 1 cut(s) 597
HinfI GANTC 2 cut(s) 414, 491
HpaII CCGG 4 cut(s) 36, 210, 422, 431
HphI GGTGA 2 cut(s) 66, 401
Hpy188I TCNGA 1 cut(s) 234
Hpy188III TCNNGA 2 cut(s) 122, 374
HpyAV CCTTC 2 cut(s) 344, 402
HpyCH4III ACNGT 1 cut(s) 484
HpyCH4V TGCA 6 cut(s) 83, 183, 308, 386, 445, 559
HpyF10VI GCNNNNNNNGC 4 cut(s) 344, 565, 596, 605
HpyF3I CTNAG 1 cut(s) 321
Hsp92II CATG 3 cut(s) 19, 169, 377
Ksp22I TGATCA 1 cut(s) 406
Kzo9I GATC 1 cut(s) 406
LguI GCTCTTC 1 cut(s) 597
LmnI GCTCC 4 cut(s) 113, 343, 433, 454
Lsp1109I GCAGC 5 cut(s) 92, 167, 429, 511, 543
LweI GCATC 2 cut(s) 209, 568
MaeI CTAG 1 cut(s) 122
MaeIII GTNAC 1 cut(s) 508
MalI GATC 1 cut(s) 408
MboI GATC 1 cut(s) 406
MboII GAAGA 1 cut(s) 584
MhlI GDGCHC 1 cut(s) 230
MluCI AATT 2 cut(s) 96, 292
MlyI GAGTC 1 cut(s) 423
MmeI TCCRAC 1 cut(s) 425
MnlI CCTC 7 cut(s) 12, 256, 267, 321, 370, 381, 535
MroXI GAANNNNTTC 1 cut(s) 354
MseI TTAA 4 cut(s) 87, 192, 317, 455
MspI CCGG 4 cut(s) 36, 210, 422, 431
MspR9I CCNGG 3 cut(s) 37, 102, 211
MvaI CCWGG 1 cut(s) 102
MwoI GCNNNNNNNGC 4 cut(s) 344, 565, 596, 605
NciI CCSGG 2 cut(s) 37, 211
NcoI CCATGG 1 cut(s) 165
NdeII GATC 1 cut(s) 406
NlaIII CATG 3 cut(s) 19, 169, 377
NlaIV GGNNCC 3 cut(s) 268, 429, 450
NmuCI GTSAC 1 cut(s) 508
PagI TCATGA 1 cut(s) 373
PciSI GCTCTTC 1 cut(s) 597
PdmI GAANNNNTTC 1 cut(s) 354
PfeI GAWTC 1 cut(s) 491
PflMI CCANNNNNTGG 2 cut(s) 152, 365
PfoI TCCNGGA 1 cut(s) 35
PkrI GCNGC 5 cut(s) 107, 182, 444, 501, 558
PleI GAGTC 1 cut(s) 422
PpsI GAGTC 1 cut(s) 422
Psp6I CCWGG 1 cut(s) 100
PspGI CCWGG 1 cut(s) 100
PspN4I GGNNCC 3 cut(s) 268, 429, 450
PspPI GGNCC 2 cut(s) 368, 398
PstI CTGCAG 2 cut(s) 85, 447
SapI GCTCTTC 1 cut(s) 597
SaqAI TTAA 4 cut(s) 87, 192, 317, 455
SatI GCNGC 5 cut(s) 106, 181, 443, 500, 557
Sau3AI GATC 1 cut(s) 406
Sau96I GGNCC 2 cut(s) 368, 398
SchI GAGTC 1 cut(s) 423
ScrFI CCNGG 3 cut(s) 37, 102, 211
SduI GDGCHC 1 cut(s) 230
SetI ASST 6 cut(s) 129, 313, 340, 394, 558, 601
SfaNI GCATC 2 cut(s) 209, 568
SfcI CTRYAG 3 cut(s) 81, 443, 480
SinI GGWCC 1 cut(s) 398
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
Sse9I AATT 2 cut(s) 96, 292
SspMI CTAG 1 cut(s) 122
StyD4I CCNGG 3 cut(s) 35, 100, 209
StyI CCWWGG 3 cut(s) 111, 165, 585
TaaI ACNGT 1 cut(s) 484
TasI AATT 2 cut(s) 96, 292
TfiI GAWTC 1 cut(s) 491
Tru1I TTAA 4 cut(s) 87, 192, 317, 455
Tru9I TTAA 4 cut(s) 87, 192, 317, 455
TscAI CASTG 6 cut(s) 157, 329, 489, 513, 526, 570
TseFI GTSAC 1 cut(s) 508
TseI GCWGC 5 cut(s) 105, 180, 442, 499, 556
Tsp45I GTSAC 1 cut(s) 508
TspDTI ATGAA 1 cut(s) 267
TspRI CASTG 6 cut(s) 157, 329, 489, 513, 526, 570
Van91I CCANNNNNTGG 2 cut(s) 152, 365
VpaK11BI GGWCC 1 cut(s) 398
XagI CCTNNNNNAGG 1 cut(s) 261
XapI RAATTY 1 cut(s) 96
XbaI TCTAGA 1 cut(s) 121
XcmI CCANNNNNNNNNTGG 1 cut(s) 212
XmnI GAANNNNTTC 1 cut(s) 354
XspI CTAG 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.