Prupe.1G029700_v2.0.a1

Sieve element occlusion

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Forward (+)
2131295 .. 2132557
1263 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G029700.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 606 bp
ATGGTAGTCATAACAGTCAAAACGCCGGCCCCTCCAGCAGAAGCCAAGAATTTACAAGAACAAAAGGGCAAGGCAGCTGAGATTCACGAGCAGGGGAGGGGAAGGTCCGGCGGGATGGGGATTTCTGACTCTGAGGAGAGATTCCGAACCTTGGTTTATCAGGATAACAAAAAAGTGAACCGCGTATTTGATGGTTCTAACATTGGCGCCCCGGTTGAAGTCAAGAATTTTGATAAGCTGATCAAGGGCAAGAATCTGTATTTGTTCTTTTCGGGACTGAACCTTAATCATCTCGATATCCAAAAGCTCATGAAAATATATCTTGAGGGAAAGAAACCACCCAATAACCACAGGATTGTGTGGATCCCCGTTGTGAAGACGTGGGATCAACACAAGTTCGATAATTTGGTGGCTCAGATGCCGTGGTACTCAGTGGAGTTTTCTCATCCCGCACAAGCATGCGTCAAGCTGCTCGAAAAGGATTACAGCTACCACGAAAGGCAAATCGTGTTGGTGATAAATCCAGCAGGGGTGGTGAAAAACAAAAATGCTCACCCTGCGATTCTACGCGATGAACGATTTGCAGAATTTCCTTACTATACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SEO_C SEO_N

Protein Analysis

202

Amino Acids

23.04

Weight (kDa)

9.37

Isoelectric Point (pI)

38.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 206
AccII CGCG 2 cut(s) 183, 570
AciI CCGC 3 cut(s) 111, 181, 450
AclWI GGATC 3 cut(s) 358, 371, 393
AcsI RAATTY 3 cut(s) 49, 226, 587
AcyI GRCGYC 1 cut(s) 207
AfaI GTAC 1 cut(s) 428
AfiI CCNNNNNNNGG 1 cut(s) 151
AgsI TTSAA 1 cut(s) 218
AjiI CACGTC 1 cut(s) 381
AluBI AGCT 5 cut(s) 77, 238, 307, 469, 489
AluI AGCT 5 cut(s) 77, 238, 307, 469, 489
AlwI GGATC 3 cut(s) 358, 371, 393
AoxI GGCC 1 cut(s) 27
ApeKI GCWGC 2 cut(s) 74, 469
ApoI RAATTY 3 cut(s) 49, 226, 587
AspLEI GCGC 1 cut(s) 209
AspS9I GGNCC 2 cut(s) 28, 105
AsuC2I CCSGG 1 cut(s) 212
AsuHPI GGTGA 3 cut(s) 526, 545, 547
AvaII GGWCC 1 cut(s) 105
BamHI GGATCC 1 cut(s) 363
BanI GGYRCC 1 cut(s) 206
BauI CACGAG 1 cut(s) 86
BbsI GAAGAC 1 cut(s) 383
BbvI GCAGC 2 cut(s) 86, 456
BccI CCATC 2 cut(s) 109, 185
BceAI ACGGC 1 cut(s) 406
BclI TGATCA 1 cut(s) 240
BcnI CCSGG 1 cut(s) 212
BfaI CTAG 1 cut(s) 604
BfoI RGCGCY 1 cut(s) 210
BisI GCNGC 2 cut(s) 75, 470
BlsI GCNGC 2 cut(s) 76, 471
Bme1390I CCNGG 1 cut(s) 212
Bme18I GGWCC 1 cut(s) 105
BmgBI CACGTC 1 cut(s) 381
BmgT120I GGNCC 2 cut(s) 28, 105
BmiI GGNNCC 3 cut(s) 30, 208, 365
BmrFI CCNGG 1 cut(s) 212
BmsI GCATC 1 cut(s) 408
BpiI GAAGAC 1 cut(s) 383
BpmI CTGGAG 1 cut(s) 18
BpuEI CTTGAG 1 cut(s) 344
BpuMI CCSGG 1 cut(s) 212
BsaHI GRCGYC 1 cut(s) 207
BsaJI CCNNGG 3 cut(s) 150, 210, 422
Bsc4I CCNNNNNNNGG 1 cut(s) 151
Bse118I RCCGGY 1 cut(s) 25
BseDI CCNNGG 3 cut(s) 150, 210, 422
BseGI GGATG 2 cut(s) 120, 445
BseLI CCNNNNNNNGG 1 cut(s) 151
BseMII CTCAG 4 cut(s) 69, 123, 428, 444
BseRI GAGGAG 1 cut(s) 149
BseXI GCAGC 2 cut(s) 86, 456
Bsh1236I CGCG 2 cut(s) 183, 570
BshFI GGCC 1 cut(s) 29
BshNI GGYRCC 1 cut(s) 206
BsiSI CCGG 3 cut(s) 26, 108, 212
BslFI GGGAC 1 cut(s) 288
BslI CCNNNNNNNGG 1 cut(s) 151
BsmFI GGGAC 1 cut(s) 288
BsnI GGCC 1 cut(s) 29
Bsp143I GATC 3 cut(s) 240, 363, 385
BspACI CCGC 3 cut(s) 111, 181, 450
BspANI GGCC 1 cut(s) 29
BspCNI CTCAG 4 cut(s) 70, 124, 427, 443
BspFNI CGCG 2 cut(s) 183, 570
BspHI TCATGA 1 cut(s) 309
BspLI GGNNCC 3 cut(s) 30, 208, 365
BspPI GGATC 3 cut(s) 358, 371, 393
BspT107I GGYRCC 1 cut(s) 206
BsrFI RCCGGY 1 cut(s) 25
BssAI RCCGGY 1 cut(s) 25
BssECI CCNNGG 3 cut(s) 150, 210, 422
BssMI GATC 3 cut(s) 240, 363, 385
BssNI GRCGYC 1 cut(s) 207
BssSI CACGAG 1 cut(s) 86
BssT1I CCWWGG 1 cut(s) 150
Bst2BI CACGAG 1 cut(s) 86
Bst4CI ACNGT 1 cut(s) 16
BstACI GRCGYC 1 cut(s) 207
BstC8I GCNNGC 2 cut(s) 27, 460
BstDEI CTNAG 4 cut(s) 78, 132, 414, 430
BstDSI CCRYGG 1 cut(s) 422
BstF5I GGATG 2 cut(s) 120, 445
BstFNI CGCG 2 cut(s) 183, 570
BstH2I RGCGCY 1 cut(s) 210
BstHHI GCGC 1 cut(s) 209
BstKTI GATC 3 cut(s) 243, 366, 388
BstMBI GATC 3 cut(s) 240, 363, 385
BstMWI GCNNNNNNNGC 2 cut(s) 35, 557
BstNSI RCATGY 1 cut(s) 462
BstSCI CCNGG 1 cut(s) 210
BstUI CGCG 2 cut(s) 183, 570
BstV1I GCAGC 2 cut(s) 86, 456
BstV2I GAAGAC 1 cut(s) 383
BstX2I RGATCY 1 cut(s) 363
BstYI RGATCY 1 cut(s) 363
BsuRI GGCC 1 cut(s) 29
BtgI CCRYGG 1 cut(s) 422
BtgZI GCGATG 1 cut(s) 585
BtrI CACGTC 1 cut(s) 381
BtsCI GGATG 2 cut(s) 120, 445
BtsIMutI CAGTG 1 cut(s) 438
Cac8I GCNNGC 2 cut(s) 27, 460
CciI TCATGA 1 cut(s) 309
CfoI GCGC 1 cut(s) 209
Cfr10I RCCGGY 1 cut(s) 25
Cfr13I GGNCC 2 cut(s) 28, 105
CseI GACGC 1 cut(s) 451
Csp6I GTAC 1 cut(s) 427
CviAII CATG 2 cut(s) 310, 459
CviJI RGCY 8 cut(s) 29, 44, 77, 238, 307, 413, 469, 489
CviKI_1 RGCY 8 cut(s) 29, 44, 77, 238, 307, 413, 469, 489
CviQI GTAC 1 cut(s) 427
DdeI CTNAG 4 cut(s) 78, 132, 414, 430
DinI GGCGCC 1 cut(s) 208
DpnI GATC 3 cut(s) 242, 365, 387
DpnII GATC 3 cut(s) 240, 363, 385
Eco130I CCWWGG 1 cut(s) 150
Eco32I GATATC 1 cut(s) 298
Eco47I GGWCC 1 cut(s) 105
EcoRV GATATC 1 cut(s) 298
EcoT14I CCWWGG 1 cut(s) 150
EgeI GGCGCC 1 cut(s) 208
EheI GGCGCC 1 cut(s) 208
ErhI CCWWGG 1 cut(s) 150
FaeI CATG 2 cut(s) 313, 462
FaiI YATR 5 cut(s) 11, 311, 319, 460, 600
FaqI GGGAC 1 cut(s) 288
FatI CATG 2 cut(s) 309, 458
FauI CCCGC 2 cut(s) 104, 457
FbaI TGATCA 1 cut(s) 240
Fnu4HI GCNGC 2 cut(s) 75, 470
FokI GGATG 2 cut(s) 127, 432
Fsp4HI GCNGC 2 cut(s) 75, 470
FspBI CTAG 1 cut(s) 604
GlaI GCGC 1 cut(s) 208
GluI GCNGC 2 cut(s) 75, 470
GsuI CTGGAG 1 cut(s) 18
HaeII RGCGCY 1 cut(s) 210
HaeIII GGCC 1 cut(s) 29
HapII CCGG 3 cut(s) 26, 108, 212
HgaI GACGC 1 cut(s) 451
HhaI GCGC 1 cut(s) 209
Hin1I GRCGYC 1 cut(s) 207
Hin1II CATG 2 cut(s) 313, 462
Hin6I GCGC 1 cut(s) 207
HinP1I GCGC 1 cut(s) 207
HinfI GANTC 5 cut(s) 82, 128, 141, 253, 562
HpaII CCGG 3 cut(s) 26, 108, 212
HphI GGTGA 3 cut(s) 526, 545, 547
Hpy166II GTNNAC 1 cut(s) 178
Hpy188I TCNGA 4 cut(s) 127, 133, 146, 417
Hpy188III TCNNGA 7 cut(s) 86, 161, 223, 273, 293, 310, 323
Hpy8I GTNNAC 1 cut(s) 178
HpyAV CCTTC 1 cut(s) 96
HpyCH4III ACNGT 1 cut(s) 16
HpyCH4IV ACGT 1 cut(s) 380
HpyCH4V TGCA 1 cut(s) 584
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 557
HpyF3I CTNAG 4 cut(s) 78, 132, 414, 430
HpySE526I ACGT 1 cut(s) 380
Hsp92I GRCGYC 1 cut(s) 207
Hsp92II CATG 2 cut(s) 313, 462
HspAI GCGC 1 cut(s) 207
KasI GGCGCC 1 cut(s) 206
KroI GCCGGC 1 cut(s) 25
KroNI GCCGGC 1 cut(s) 27
Ksp22I TGATCA 1 cut(s) 240
Kzo9I GATC 3 cut(s) 240, 363, 385
Lsp1109I GCAGC 2 cut(s) 86, 456
LweI GCATC 1 cut(s) 408
MaeI CTAG 1 cut(s) 604
MaeII ACGT 1 cut(s) 380
MalI GATC 3 cut(s) 242, 365, 387
MboI GATC 3 cut(s) 240, 363, 385
MboII GAAGA 1 cut(s) 388
MflI RGATCY 1 cut(s) 363
MluCI AATT 4 cut(s) 49, 226, 403, 587
Mly113I GGCGCC 1 cut(s) 207
MlyI GAGTC 1 cut(s) 122
MnlI CCTC 4 cut(s) 42, 90, 127, 319
MroNI GCCGGC 1 cut(s) 25
MseI TTAA 1 cut(s) 285
MslI CAYNNNNRTG 1 cut(s) 457
MspA1I CMGCKG 1 cut(s) 77
MspI CCGG 3 cut(s) 26, 108, 212
MspR9I CCNGG 1 cut(s) 212
MvnI CGCG 2 cut(s) 183, 570
MwoI GCNNNNNNNGC 2 cut(s) 35, 557
NaeI GCCGGC 1 cut(s) 27
NarI GGCGCC 1 cut(s) 207
NciI CCSGG 1 cut(s) 212
NdeII GATC 3 cut(s) 240, 363, 385
NgoMIV GCCGGC 1 cut(s) 25
NlaIII CATG 2 cut(s) 313, 462
NlaIV GGNNCC 3 cut(s) 30, 208, 365
NspI RCATGY 1 cut(s) 462
PaeI GCATGC 1 cut(s) 462
PagI TCATGA 1 cut(s) 309
PcsI WCGNNNNNNNCGW 1 cut(s) 574
PdiI GCCGGC 1 cut(s) 27
PfeI GAWTC 4 cut(s) 82, 141, 253, 562
PkrI GCNGC 2 cut(s) 76, 471
PleI GAGTC 1 cut(s) 122
PluTI GGCGCC 1 cut(s) 210
PpsI GAGTC 1 cut(s) 122
PspN4I GGNNCC 3 cut(s) 30, 208, 365
PspPI GGNCC 2 cut(s) 28, 105
PsuI RGATCY 1 cut(s) 363
PvuII CAGCTG 1 cut(s) 77
RsaI GTAC 1 cut(s) 428
RsaNI GTAC 1 cut(s) 427
RseI CAYNNNNRTG 1 cut(s) 457
SaqAI TTAA 1 cut(s) 285
SatI GCNGC 2 cut(s) 75, 470
Sau3AI GATC 3 cut(s) 240, 363, 385
Sau96I GGNCC 2 cut(s) 28, 105
SchI GAGTC 1 cut(s) 122
ScrFI CCNGG 1 cut(s) 212
SfaNI GCATC 1 cut(s) 408
SfoI GGCGCC 1 cut(s) 208
SinI GGWCC 1 cut(s) 105
SmiMI CAYNNNNRTG 1 cut(s) 457
SmlI CTYRAG 1 cut(s) 323
SmoI CTYRAG 1 cut(s) 323
SphI GCATGC 1 cut(s) 462
Sse9I AATT 4 cut(s) 49, 226, 403, 587
SsiI CCGC 3 cut(s) 111, 181, 450
SspDI GGCGCC 1 cut(s) 206
SspMI CTAG 1 cut(s) 604
StyD4I CCNGG 1 cut(s) 210
StyI CCWWGG 1 cut(s) 150
TaaI ACNGT 1 cut(s) 16
TaiI ACGT 1 cut(s) 383
TaqI TCGA 3 cut(s) 294, 399, 474
TasI AATT 4 cut(s) 49, 226, 403, 587
TfiI GAWTC 4 cut(s) 82, 141, 253, 562
Tru1I TTAA 1 cut(s) 285
Tru9I TTAA 1 cut(s) 285
TscAI CASTG 1 cut(s) 438
TseI GCWGC 2 cut(s) 74, 469
TspDTI ATGAA 2 cut(s) 326, 588
TspRI CASTG 1 cut(s) 438
VpaK11BI GGWCC 1 cut(s) 105
XapI RAATTY 3 cut(s) 49, 226, 587
XceI RCATGY 1 cut(s) 462
XspI CTAG 1 cut(s) 604
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.