Prupe.1G032200_v2.0.a1

transcription regulatory region sequence-specific DNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Forward (+)
2260818 .. 2261840
1023 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G032200.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 456 bp
ATGAAGAGAAAAGCTTCAGAAGTAACAATGGAGCAGAAAGAAGCGAAGGTGTATAAAAACAGAAGGTATGTGAGCTTCTCAAAGAGGCGCAGCGGCCTGTTTAGCAAGGGTAAAGACTTCTGCAAAAAGTTTGAAGCAGAAATTGGCATTGTTGTGCTCTCTGGAGCAGGCAGGCCTTACTGGTCCCCGGACAACCCTTCCCTCGACGCCGTCCTCGACCGCTTCATGCAATCAGACCAGGCACCTACTAACGCCATTGATTTCAAGGTTAGACTGCAGAAGAAGAGGAAGAGAGAGGAACCTGATAATGAAGTTCAGGGACAGCTTGCGGAGGAGGTGAAGTCATGTCGAACAGTTAAGGACATGTTTTCGTTGAGAGACAAATACTTGGAAATGCGGATAGGTTGTCTTCGTCATAAGATCCGTAATCACTATATGTATAAACCAATGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

152

Amino Acids

17.82

Weight (kDa)

9.84

Isoelectric Point (pI)

52.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 241
AciI CCGC 4 cut(s) 93, 220, 329, 397
AclWI GGATC 1 cut(s) 415
AcyI GRCGYC 1 cut(s) 207
AflIII ACRYGT 1 cut(s) 363
AgsI TTSAA 2 cut(s) 134, 265
AjnI CCWGG 1 cut(s) 237
AjuI GAANNNNNNNTTGG 2 cut(s) 126, 158
AluBI AGCT 3 cut(s) 14, 75, 325
AluI AGCT 3 cut(s) 14, 75, 325
Alw21I GWGCWC 1 cut(s) 159
Alw26I GTCTC 1 cut(s) 372
AlwI GGATC 1 cut(s) 415
AoxI GGCC 2 cut(s) 94, 173
ApeKI GCWGC 1 cut(s) 90
Asp700I GAANNNNTTC 1 cut(s) 13
AspLEI GCGC 1 cut(s) 90
AspS9I GGNCC 1 cut(s) 183
AsuC2I CCSGG 1 cut(s) 188
AsuHPI GGTGA 1 cut(s) 349
AvaII GGWCC 1 cut(s) 183
BanI GGYRCC 1 cut(s) 241
BarI GAAGNNNNNNTAC 2 cut(s) 59, 91
BbsI GAAGAC 1 cut(s) 401
Bbv12I GWGCWC 1 cut(s) 159
BbvI GCAGC 1 cut(s) 102
BceAI ACGGC 1 cut(s) 194
BciT130I CCWGG 1 cut(s) 239
BcnI CCSGG 1 cut(s) 188
BcoDI GTCTC 1 cut(s) 372
BfmI CTRYAG 1 cut(s) 275
BisI GCNGC 2 cut(s) 91, 94
BlsI GCNGC 2 cut(s) 92, 95
Bme1390I CCNGG 2 cut(s) 188, 239
Bme18I GGWCC 1 cut(s) 183
BmgT120I GGNCC 1 cut(s) 183
BmiI GGNNCC 3 cut(s) 185, 243, 300
BmrFI CCNGG 2 cut(s) 188, 239
BpiI GAAGAC 1 cut(s) 401
BpmI CTGGAG 1 cut(s) 183
BpuMI CCSGG 1 cut(s) 188
BsaHI GRCGYC 1 cut(s) 207
BsaJI CCNNGG 1 cut(s) 186
BsaXI ACNNNNNCTCC 2 cut(s) 326, 356
Bse1I ACTGG 1 cut(s) 185
BseBI CCWGG 1 cut(s) 239
BseDI CCNNGG 1 cut(s) 186
BseNI ACTGG 1 cut(s) 185
BseRI GAGGAG 1 cut(s) 347
BseXI GCAGC 1 cut(s) 102
Bsh1285I CGRYCG 1 cut(s) 220
BshFI GGCC 2 cut(s) 96, 175
BshNI GGYRCC 1 cut(s) 241
BsiEI CGRYCG 1 cut(s) 220
BsiHKAI GWGCWC 1 cut(s) 159
BsiSI CCGG 1 cut(s) 188
BslFI GGGAC 2 cut(s) 169, 333
BsmAI GTCTC 1 cut(s) 372
BsmFI GGGAC 2 cut(s) 169, 333
BsnI GGCC 2 cut(s) 96, 175
Bsp1286I GDGCHC 1 cut(s) 159
Bsp143I GATC 1 cut(s) 420
BspACI CCGC 4 cut(s) 93, 220, 329, 397
BspANI GGCC 2 cut(s) 96, 175
BspLI GGNNCC 3 cut(s) 185, 243, 300
BspMAI CTGCAG 1 cut(s) 279
BspPI GGATC 1 cut(s) 415
BspT107I GGYRCC 1 cut(s) 241
BsrI ACTGG 1 cut(s) 185
BssECI CCNNGG 1 cut(s) 186
BssMI GATC 1 cut(s) 420
BssNI GRCGYC 1 cut(s) 207
Bst2UI CCWGG 1 cut(s) 239
Bst4CI ACNGT 1 cut(s) 355
Bst6I CTCTTC 2 cut(s) 278, 284
BstACI GRCGYC 1 cut(s) 207
BstC8I GCNNGC 3 cut(s) 169, 173, 327
BstHHI GCGC 1 cut(s) 90
BstKTI GATC 1 cut(s) 423
BstMAI GTCTC 1 cut(s) 372
BstMBI GATC 1 cut(s) 420
BstMCI CGRYCG 1 cut(s) 220
BstMWI GCNNNNNNNGC 1 cut(s) 102
BstNI CCWGG 1 cut(s) 239
BstNSI RCATGY 1 cut(s) 367
BstSCI CCNGG 2 cut(s) 186, 237
BstSFI CTRYAG 1 cut(s) 275
BstV1I GCAGC 1 cut(s) 102
BstV2I GAAGAC 1 cut(s) 401
BstX2I RGATCY 1 cut(s) 420
BstYI RGATCY 1 cut(s) 420
BsuRI GGCC 2 cut(s) 96, 175
Cac8I GCNNGC 3 cut(s) 169, 173, 327
CfoI GCGC 1 cut(s) 90
Cfr13I GGNCC 1 cut(s) 183
CseI GACGC 1 cut(s) 215
CviAII CATG 3 cut(s) 226, 345, 364
CviJI RGCY 5 cut(s) 14, 75, 96, 175, 325
CviKI_1 RGCY 5 cut(s) 14, 75, 96, 175, 325
DpnI GATC 1 cut(s) 422
DpnII GATC 1 cut(s) 420
Eam1104I CTCTTC 2 cut(s) 278, 284
EarI CTCTTC 2 cut(s) 278, 284
Eco147I AGGCCT 1 cut(s) 175
Eco47I GGWCC 1 cut(s) 183
EcoRII CCWGG 1 cut(s) 237
FaeI CATG 3 cut(s) 229, 348, 367
FaiI YATR 9 cut(s) 54, 69, 227, 346, 365, 417, 435, 437, 441
FaqI GGGAC 2 cut(s) 169, 333
FatI CATG 3 cut(s) 225, 344, 363
Fnu4HI GCNGC 2 cut(s) 91, 94
Fsp4HI GCNGC 2 cut(s) 91, 94
GlaI GCGC 1 cut(s) 89
GluI GCNGC 2 cut(s) 91, 94
GsuI CTGGAG 1 cut(s) 183
HaeIII GGCC 2 cut(s) 96, 175
HapII CCGG 1 cut(s) 188
HgaI GACGC 1 cut(s) 215
HhaI GCGC 1 cut(s) 90
Hin1I GRCGYC 1 cut(s) 207
Hin1II CATG 3 cut(s) 229, 348, 367
Hin6I GCGC 1 cut(s) 88
HinP1I GCGC 1 cut(s) 88
HindIII AAGCTT 1 cut(s) 12
HpaII CCGG 1 cut(s) 188
HphI GGTGA 1 cut(s) 349
Hpy188I TCNGA 2 cut(s) 19, 235
Hpy188III TCNNGA 1 cut(s) 162
Hpy99I CGWCG 1 cut(s) 209
HpyAV CCTTC 3 cut(s) 40, 57, 207
HpyCH4III ACNGT 1 cut(s) 355
HpyCH4V TGCA 3 cut(s) 123, 229, 277
HpyF10VI GCNNNNNNNGC 1 cut(s) 102
Hsp92I GRCGYC 1 cut(s) 207
Hsp92II CATG 3 cut(s) 229, 348, 367
HspAI GCGC 1 cut(s) 88
Kzo9I GATC 1 cut(s) 420
LmnI GCTCC 2 cut(s) 31, 164
Lsp1109I GCAGC 1 cut(s) 102
MaeIII GTNAC 1 cut(s) 22
MalI GATC 1 cut(s) 422
MboI GATC 1 cut(s) 420
MboII GAAGA 5 cut(s) 16, 292, 295, 301, 401
MflI RGATCY 1 cut(s) 420
MhlI GDGCHC 1 cut(s) 159
MluCI AATT 1 cut(s) 141
MnlI CCTC 7 cut(s) 78, 212, 224, 279, 289, 325, 328
MroXI GAANNNNTTC 1 cut(s) 13
MseI TTAA 2 cut(s) 357, 454
MslI CAYNNNNRTG 1 cut(s) 152
MspA1I CMGCKG 1 cut(s) 93
MspI CCGG 1 cut(s) 188
MspR9I CCNGG 2 cut(s) 188, 239
MvaI CCWGG 1 cut(s) 239
MwoI GCNNNNNNNGC 1 cut(s) 102
NciI CCSGG 1 cut(s) 188
NdeII GATC 1 cut(s) 420
NlaIII CATG 3 cut(s) 229, 348, 367
NlaIV GGNNCC 3 cut(s) 185, 243, 300
NspI RCATGY 1 cut(s) 367
PceI AGGCCT 1 cut(s) 175
PciI ACATGT 1 cut(s) 363
PcsI WCGNNNNNNNCGW 1 cut(s) 213
PdmI GAANNNNTTC 1 cut(s) 13
PflFI GACNNNGTC 1 cut(s) 209
PkrI GCNGC 2 cut(s) 92, 95
PscI ACATGT 1 cut(s) 363
Psp6I CCWGG 1 cut(s) 237
PspGI CCWGG 1 cut(s) 237
PspN4I GGNNCC 3 cut(s) 185, 243, 300
PspPI GGNCC 1 cut(s) 183
PstI CTGCAG 1 cut(s) 279
PsuI RGATCY 1 cut(s) 420
PsyI GACNNNGTC 1 cut(s) 209
RseI CAYNNNNRTG 1 cut(s) 152
SaqAI TTAA 2 cut(s) 357, 454
SatI GCNGC 2 cut(s) 91, 94
Sau3AI GATC 1 cut(s) 420
Sau96I GGNCC 1 cut(s) 183
ScrFI CCNGG 2 cut(s) 188, 239
SduI GDGCHC 1 cut(s) 159
SfcI CTRYAG 1 cut(s) 275
SinI GGWCC 1 cut(s) 183
SmiMI CAYNNNNRTG 1 cut(s) 152
Sse9I AATT 1 cut(s) 141
SseBI AGGCCT 1 cut(s) 175
SsiI CCGC 4 cut(s) 93, 220, 329, 397
StuI AGGCCT 1 cut(s) 175
StyD4I CCNGG 2 cut(s) 186, 237
TaaI ACNGT 1 cut(s) 355
TaqI TCGA 3 cut(s) 204, 216, 349
TasI AATT 1 cut(s) 141
TauI GCSGC 1 cut(s) 96
Tru1I TTAA 2 cut(s) 357, 454
Tru9I TTAA 2 cut(s) 357, 454
TseI GCWGC 1 cut(s) 90
TspDTI ATGAA 3 cut(s) 17, 214, 324
TspGWI ACGGA 1 cut(s) 413
Tth111I GACNNNGTC 1 cut(s) 209
VpaK11BI GGWCC 1 cut(s) 183
XceI RCATGY 1 cut(s) 367
XmnI GAANNNNTTC 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.