Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

2408447 .. 2412432

Gene Structure 3986 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G034500.1_v2.0.a1.CDS.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGAAACCAATGAGCTACAGAAGGGAGCACCGTTCCTCCAAATCAGCTCTTTTAGATGGTCTCGAGGAAGGTGGTCTTAGGGCCTCCTCCTCATACTCCCATGACATTAATGAGCATGACAATGACAAAGCCGTGCAAAGTTTACAAGACAGAGTTGTTTTTCTGAAGAGATTAACAGGTGATATACATGAAGAGGTGGAGAGTCATAATCGTTTGCTTGACCGAATGGTATGCTTGGCAATCACATGGATGCATCAAGGGGTATATTGTCTGGAACAATGGATCGGTTTAAGATGGTATTTGAGAAAAAATCAAGCCGGAGAATGTGTAGACTTGTGGCATATTTTGTGGTTTCCTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006810 GO:0006888 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016192 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

No domains found.

Protein Analysis

121

Amino Acids

14.14

Weight (kDa)

6.36

Isoelectric Point (pI)

75.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	330
AclWI	GGATC	1 cut(s)	290
AcuI	CTGAAG	1 cut(s)	185
AluBI	AGCT	2 cut(s)	15, 47
AluI	AGCT	2 cut(s)	15, 47
Alw21I	GWGCWC	1 cut(s)	30
Alw26I	GTCTC	1 cut(s)	65
AlwI	GGATC	1 cut(s)	290
Ama87I	CYCGRG	1 cut(s)	62
AoxI	GGCC	1 cut(s)	81
AseI	ATTAAT	1 cut(s)	108
AspS9I	GGNCC	1 cut(s)	81
AsuHPI	GGTGA	1 cut(s)	191
AvaI	CYCGRG	1 cut(s)	62
Bbv12I	GWGCWC	1 cut(s)	30
BccI	CCATC	2 cut(s)	50, 288
BceAI	ACGGC	1 cut(s)	116
BcgI	CGANNNNNNTGC	2 cut(s)	213, 247
BcoDI	GTCTC	1 cut(s)	65
BfmI	CTRYAG	1 cut(s)	16
BmeT110I	CYCGRG	1 cut(s)	62
BmgT120I	GGNCC	1 cut(s)	81
BmsI	GCATC	2 cut(s)	240, 262
BsaI	GGTCTC	1 cut(s)	65
BsaXI	ACNNNNNCTCC	4 cut(s)	20, 50, 312, 342
BseGI	GGATG	1 cut(s)	255
BseRI	GAGGAG	2 cut(s)	76, 79
BshFI	GGCC	1 cut(s)	83
BsiHKAI	GWGCWC	1 cut(s)	30
BsiHKCI	CYCGRG	1 cut(s)	62
BsiSI	CCGG	1 cut(s)	318
BsmAI	GTCTC	1 cut(s)	65
BsnI	GGCC	1 cut(s)	83
Bso31I	GGTCTC	1 cut(s)	65
BsoBI	CYCGRG	1 cut(s)	62
Bsp1286I	GDGCHC	1 cut(s)	30
Bsp143I	GATC	1 cut(s)	282
BspANI	GGCC	1 cut(s)	83
BspPI	GGATC	1 cut(s)	290
BspTNI	GGTCTC	1 cut(s)	65
BssMI	GATC	1 cut(s)	282
Bst4CI	ACNGT	1 cut(s)	32
Bst6I	CTCTTC	2 cut(s)	161, 186
BstDEI	CTNAG	1 cut(s)	77
BstF5I	GGATG	1 cut(s)	255
BstKTI	GATC	1 cut(s)	285
BstMAI	GTCTC	1 cut(s)	65
BstMBI	GATC	1 cut(s)	282
BstSFI	CTRYAG	1 cut(s)	16
BsuRI	GGCC	1 cut(s)	83
BtsCI	GGATG	1 cut(s)	255
Cfr13I	GGNCC	1 cut(s)	81
CviAII	CATG	4 cut(s)	101, 116, 188, 246
CviJI	RGCY	5 cut(s)	15, 47, 83, 131, 317
CviKI_1	RGCY	5 cut(s)	15, 47, 83, 131, 317
DdeI	CTNAG	1 cut(s)	77
DpnI	GATC	1 cut(s)	284
DpnII	GATC	1 cut(s)	282
Eam1104I	CTCTTC	2 cut(s)	161, 186
EarI	CTCTTC	2 cut(s)	161, 186
Eco31I	GGTCTC	1 cut(s)	65
Eco57I	CTGAAG	1 cut(s)	185
Eco88I	CYCGRG	1 cut(s)	62
EcoO109I	RGGNCCY	1 cut(s)	81
EcoT22I	ATGCAT	1 cut(s)	255
FaeI	CATG	4 cut(s)	104, 119, 191, 249
FalI	AAGNNNNNCTT	2 cut(s)	60, 92
FatI	CATG	4 cut(s)	100, 115, 187, 245
FblI	GTMKAC	1 cut(s)	330
FokI	GGATG	1 cut(s)	262
HaeIII	GGCC	1 cut(s)	83
HapII	CCGG	1 cut(s)	318
Hin1II	CATG	4 cut(s)	104, 119, 191, 249
HinfI	GANTC	1 cut(s)	202
HpaII	CCGG	1 cut(s)	318
HphI	GGTGA	1 cut(s)	191
Hpy166II	GTNNAC	2 cut(s)	143, 331
Hpy188I	TCNGA	1 cut(s)	165
Hpy188III	TCNNGA	2 cut(s)	62, 272
Hpy8I	GTNNAC	2 cut(s)	143, 331
HpyAV	CCTTC	2 cut(s)	15, 62
HpyCH4III	ACNGT	1 cut(s)	32
HpyCH4V	TGCA	2 cut(s)	136, 253
HpyF3I	CTNAG	1 cut(s)	77
Hsp92II	CATG	4 cut(s)	104, 119, 191, 249
Kzo9I	GATC	1 cut(s)	282
LmnI	GCTCC	1 cut(s)	25
LpnPI	CCDG	3 cut(s)	162, 257, 331
LweI	GCATC	2 cut(s)	240, 262
MalI	GATC	1 cut(s)	284
MboI	GATC	1 cut(s)	282
MboII	GAAGA	2 cut(s)	178, 203
MhlI	GDGCHC	1 cut(s)	30
MlyI	GAGTC	1 cut(s)	211
MnlI	CCTC	6 cut(s)	46, 58, 94, 97, 100, 187
Mph1103I	ATGCAT	1 cut(s)	255
MseI	TTAA	4 cut(s)	108, 173, 290, 361
MslI	CAYNNNNRTG	2 cut(s)	120, 248
MspI	CCGG	1 cut(s)	318
NdeII	GATC	1 cut(s)	282
NlaIII	CATG	4 cut(s)	104, 119, 191, 249
NsiI	ATGCAT	1 cut(s)	255
PaeR7I	CTCGAG	1 cut(s)	62
PleI	GAGTC	1 cut(s)	210
PpsI	GAGTC	1 cut(s)	210
PshBI	ATTAAT	1 cut(s)	108
PspPI	GGNCC	1 cut(s)	81
RseI	CAYNNNNRTG	2 cut(s)	120, 248
SaqAI	TTAA	4 cut(s)	108, 173, 290, 361
Sau3AI	GATC	1 cut(s)	282
Sau96I	GGNCC	1 cut(s)	81
SchI	GAGTC	1 cut(s)	211
SduI	GDGCHC	1 cut(s)	30
SetI	ASST	5 cut(s)	17, 49, 73, 181, 198
SfaNI	GCATC	2 cut(s)	240, 262
SfcI	CTRYAG	1 cut(s)	16
Sfr274I	CTCGAG	1 cut(s)	62
SlaI	CTCGAG	1 cut(s)	62
SmiMI	CAYNNNNRTG	2 cut(s)	120, 248
SmlI	CTYRAG	1 cut(s)	62
SmoI	CTYRAG	1 cut(s)	62
TaaI	ACNGT	1 cut(s)	32
TaqI	TCGA	1 cut(s)	63
TaqII	GACCGA	1 cut(s)	237
Tru1I	TTAA	4 cut(s)	108, 173, 290, 361
Tru9I	TTAA	4 cut(s)	108, 173, 290, 361
TspDTI	ATGAA	2 cut(s)	17, 204
VspI	ATTAAT	1 cut(s)	108
XhoI	CTCGAG	1 cut(s)	62
XmiI	GTMKAC	1 cut(s)	330
Zsp2I	ATGCAT	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.