Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

2483341 .. 2485924

Gene Structure 2584 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G035600.1_v2.0.a1.CDS.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGCAGCTACCAATACAAATGAGGTTCCAACCAATTATGACAGAAAAAAGTTCCCAGAAGGCCTTGAGTTCGATAGTCCAACCAAACGCGAAGAGATTTTTACAAAAGTTGGAGAGGCATCACAGACTTGGGGATTTTTTCAAATTGTCAATCATGGAATACCTATTGATGTTTTGGAGGAGATAAAGGATGAAGGAAGAGGAACTAAGGGGCTGCAAGAAGAGGAGCAAGAGAAGGACGGTCGTTTTTGGCCGACAGCAGTGAAGTCGCGTCAATTAGTCCGCGCACTGTTTGGATATGTAAAAAACTTACTGTACAAATTGCTTATTTTCTTGCAAAAACTTCTGCAAGATCATATTGGTGGTCTTCAAGTTCTTCATCAGAACAAGTGGATTGATGTACTTCCTGTGCCTGGGGCTCTAGTGGTTAACATTGGAGATCTTCTACAGCTTATATCAAATGATAGATTCAGGAGTGTAGAACACAGAGTATTGGCAAATCGTGCCGGTCCAAGAGTATCCGTTGAGTTGCTCTCAGAAGACAATCTTCCAAAATGCAGGGAGACAACTGTGAAGGACTATAATGCTCACTTCCATAACAAAGGCCTTGATGGAACCTCTGCCTTGACTCATTTCAAGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005911 GO:0006082 GO:0006109 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009506 GO:0009815 GO:0009889 GO:0009987 GO:0010439 GO:0010675 GO:0016143 GO:0016144 GO:0016491 GO:0016638 GO:0016641 GO:0019222 GO:0019748 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0030054 GO:0031323 GO:0031326 GO:0042762 GO:0043255 GO:0043436 GO:0043455 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044550 GO:0050789 GO:0050794 GO:0051171 GO:0055044 GO:0055114 GO:0062012 GO:0065007 GO:0071704 GO:0080090 GO:1900376 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

215

Amino Acids

24.36

Weight (kDa)

6.67

Isoelectric Point (pI)

41.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	90, 271, 285
AciI	CCGC	1 cut(s)	283
AcoI	YGGCCR	1 cut(s)	251
AfaI	GTAC	2 cut(s)	317, 402
AfiI	CCNNNNNNNGG	1 cut(s)	413
AgsI	TTSAA	3 cut(s)	143, 371, 637
AjnI	CCWGG	1 cut(s)	412
AluBI	AGCT	3 cut(s)	8, 451, 640
AluI	AGCT	3 cut(s)	8, 451, 640
Alw26I	GTCTC	1 cut(s)	557
AoxI	GGCC	3 cut(s)	61, 251, 604
ApeKI	GCWGC	2 cut(s)	5, 214
AspLEI	GCGC	1 cut(s)	287
AspS9I	GGNCC	1 cut(s)	509
AvaII	GGWCC	1 cut(s)	509
BanII	GRGCYC	1 cut(s)	421
BbsI	GAAGAC	2 cut(s)	359, 546
BbvI	GCAGC	2 cut(s)	17, 201
BccI	CCATC	1 cut(s)	605
BcgI	CGANNNNNNTGC	2 cut(s)	249, 283
BciT130I	CCWGG	1 cut(s)	414
BciVI	GTATCC	1 cut(s)	529
BcoDI	GTCTC	1 cut(s)	557
BfaI	CTAG	1 cut(s)	422
BfmI	CTRYAG	1 cut(s)	446
BfuI	GTATCC	1 cut(s)	529
BglII	AGATCT	1 cut(s)	439
BisI	GCNGC	2 cut(s)	6, 215
BlsI	GCNGC	2 cut(s)	7, 216
Bme1390I	CCNGG	1 cut(s)	414
Bme18I	GGWCC	1 cut(s)	509
BmgT120I	GGNCC	1 cut(s)	509
BmiI	GGNNCC	2 cut(s)	27, 616
BmrFI	CCNGG	1 cut(s)	414
BmsI	GCATC	1 cut(s)	128
BpiI	GAAGAC	2 cut(s)	359, 546
BplI	GAGNNNNNCTC	2 cut(s)	518, 550
BpuEI	CTTGAG	1 cut(s)	86
BsaJI	CCNNGG	1 cut(s)	413
Bsc4I	CCNNNNNNNGG	1 cut(s)	413
Bse118I	RCCGGY	1 cut(s)	506
BseBI	CCWGG	1 cut(s)	414
BseDI	CCNNGG	1 cut(s)	413
BseGI	GGATG	1 cut(s)	196
BseLI	CCNNNNNNNGG	1 cut(s)	413
BseMII	CTCAG	1 cut(s)	549
BseRI	GAGGAG	2 cut(s)	194, 239
BseXI	GCAGC	2 cut(s)	17, 201
Bsh1236I	CGCG	3 cut(s)	90, 271, 285
Bsh1285I	CGRYCG	1 cut(s)	244
BshFI	GGCC	3 cut(s)	63, 253, 606
BsiEI	CGRYCG	1 cut(s)	244
BsiSI	CCGG	1 cut(s)	507
BslI	CCNNNNNNNGG	1 cut(s)	413
BsmAI	GTCTC	1 cut(s)	557
BsnI	GGCC	3 cut(s)	63, 253, 606
Bsp1286I	GDGCHC	1 cut(s)	421
Bsp1407I	TGTACA	1 cut(s)	315
Bsp143I	GATC	2 cut(s)	352, 439
BspACI	CCGC	1 cut(s)	283
BspANI	GGCC	3 cut(s)	63, 253, 606
BspCNI	CTCAG	1 cut(s)	548
BspFNI	CGCG	3 cut(s)	90, 271, 285
BspLI	GGNNCC	2 cut(s)	27, 616
BsrFI	RCCGGY	1 cut(s)	506
BsrGI	TGTACA	1 cut(s)	315
BssAI	RCCGGY	1 cut(s)	506
BssECI	CCNNGG	1 cut(s)	413
BssMI	GATC	2 cut(s)	352, 439
Bst2UI	CCWGG	1 cut(s)	414
Bst4CI	ACNGT	4 cut(s)	242, 291, 315, 571
Bst6I	CTCTTC	3 cut(s)	87, 193, 216
BstAPI	GCANNNNNTGC	1 cut(s)	503
BstAUI	TGTACA	1 cut(s)	315
BstDEI	CTNAG	2 cut(s)	207, 535
BstF5I	GGATG	1 cut(s)	196
BstFNI	CGCG	3 cut(s)	90, 271, 285
BstHHI	GCGC	1 cut(s)	287
BstKTI	GATC	2 cut(s)	355, 442
BstMAI	GTCTC	1 cut(s)	557
BstMBI	GATC	2 cut(s)	352, 439
BstMCI	CGRYCG	1 cut(s)	244
BstMWI	GCNNNNNNNGC	1 cut(s)	503
BstNI	CCWGG	1 cut(s)	414
BstSCI	CCNGG	1 cut(s)	412
BstSFI	CTRYAG	1 cut(s)	446
BstUI	CGCG	3 cut(s)	90, 271, 285
BstV1I	GCAGC	2 cut(s)	17, 201
BstV2I	GAAGAC	2 cut(s)	359, 546
BstX2I	RGATCY	1 cut(s)	439
BstYI	RGATCY	1 cut(s)	439
BsuI	GTATCC	1 cut(s)	529
BsuRI	GGCC	3 cut(s)	63, 253, 606
BtsCI	GGATG	1 cut(s)	196
BtsI	GCAGTG	1 cut(s)	267
BtsIMutI	CAGTG	2 cut(s)	267, 287
CfoI	GCGC	1 cut(s)	287
Cfr10I	RCCGGY	1 cut(s)	506
Cfr13I	GGNCC	1 cut(s)	509
CseI	GACGC	1 cut(s)	260
Csp6I	GTAC	2 cut(s)	316, 401
CviAII	CATG	1 cut(s)	155
CviJI	RGCY	8 cut(s)	8, 63, 214, 253, 419, 451, 606, 640
CviKI_1	RGCY	8 cut(s)	8, 63, 214, 253, 419, 451, 606, 640
CviQI	GTAC	2 cut(s)	316, 401
DdeI	CTNAG	2 cut(s)	207, 535
DpnI	GATC	2 cut(s)	354, 441
DpnII	GATC	2 cut(s)	352, 439
EaeI	YGGCCR	1 cut(s)	251
Eam1104I	CTCTTC	3 cut(s)	87, 193, 216
EarI	CTCTTC	3 cut(s)	87, 193, 216
Eco147I	AGGCCT	2 cut(s)	63, 606
Eco24I	GRGCYC	1 cut(s)	421
Eco47I	GGWCC	1 cut(s)	509
EcoRII	CCWGG	1 cut(s)	412
EcoT38I	GRGCYC	1 cut(s)	421
FaeI	CATG	1 cut(s)	158
FaiI	YATR	7 cut(s)	39, 156, 300, 357, 455, 582, 597
FalI	AAGNNNNNCTT	2 cut(s)	531, 563
FatI	CATG	1 cut(s)	154
Fnu4HI	GCNGC	2 cut(s)	6, 215
FokI	GGATG	1 cut(s)	203
FriOI	GRGCYC	1 cut(s)	421
Fsp4HI	GCNGC	2 cut(s)	6, 215
FspBI	CTAG	1 cut(s)	422
GlaI	GCGC	1 cut(s)	286
GluI	GCNGC	2 cut(s)	6, 215
HaeIII	GGCC	3 cut(s)	63, 253, 606
HapII	CCGG	1 cut(s)	507
HgaI	GACGC	1 cut(s)	260
HhaI	GCGC	1 cut(s)	287
Hin1II	CATG	1 cut(s)	158
Hin6I	GCGC	1 cut(s)	285
HinP1I	GCGC	1 cut(s)	285
HincII	GTYRAC	1 cut(s)	430
HindII	GTYRAC	1 cut(s)	430
HinfI	GANTC	2 cut(s)	468, 628
HpaI	GTTAAC	1 cut(s)	430
HpaII	CCGG	1 cut(s)	507
Hpy166II	GTNNAC	1 cut(s)	430
Hpy188I	TCNGA	3 cut(s)	384, 538, 644
Hpy188III	TCNNGA	1 cut(s)	472
Hpy8I	GTNNAC	1 cut(s)	430
HpyAV	CCTTC	4 cut(s)	53, 188, 229, 568
HpyCH4III	ACNGT	4 cut(s)	242, 291, 315, 571
HpyCH4V	TGCA	4 cut(s)	217, 337, 349, 558
HpyF10VI	GCNNNNNNNGC	1 cut(s)	503
HpyF3I	CTNAG	2 cut(s)	207, 535
Hsp92II	CATG	1 cut(s)	158
HspAI	GCGC	1 cut(s)	285
KspAI	GTTAAC	1 cut(s)	430
Kzo9I	GATC	2 cut(s)	352, 439
LmnI	GCTCC	1 cut(s)	226
LpnPI	CCDG	7 cut(s)	69, 399, 420, 426, 457, 520, 544
Lsp1109I	GCAGC	2 cut(s)	17, 201
LweI	GCATC	1 cut(s)	128
MaeI	CTAG	1 cut(s)	422
MalI	GATC	2 cut(s)	354, 441
MboI	GATC	2 cut(s)	352, 439
MboII	GAAGA	8 cut(s)	104, 210, 233, 359, 368, 434, 539, 551
MflI	RGATCY	1 cut(s)	439
MhlI	GDGCHC	1 cut(s)	421
MluCI	AATT	4 cut(s)	34, 144, 275, 320
MlyI	GAGTC	1 cut(s)	622
MmeI	TCCRAC	3 cut(s)	53, 91, 104
MnlI	CCTC	6 cut(s)	16, 109, 172, 194, 217, 628
MseI	TTAA	1 cut(s)	429
MslI	CAYNNNNRTG	1 cut(s)	360
MspI	CCGG	1 cut(s)	507
MspR9I	CCNGG	1 cut(s)	414
MvaI	CCWGG	1 cut(s)	414
MvnI	CGCG	3 cut(s)	90, 271, 285
MwoI	GCNNNNNNNGC	1 cut(s)	503
NdeII	GATC	2 cut(s)	352, 439
NlaIII	CATG	1 cut(s)	158
NlaIV	GGNNCC	2 cut(s)	27, 616
PceI	AGGCCT	2 cut(s)	63, 606
PfeI	GAWTC	1 cut(s)	468
PkrI	GCNGC	2 cut(s)	7, 216
PleI	GAGTC	1 cut(s)	622
PpsI	GAGTC	1 cut(s)	622
Psp6I	CCWGG	1 cut(s)	412
PspGI	CCWGG	1 cut(s)	412
PspN4I	GGNNCC	2 cut(s)	27, 616
PspPI	GGNCC	1 cut(s)	509
PsuI	RGATCY	1 cut(s)	439
RsaI	GTAC	2 cut(s)	317, 402
RsaNI	GTAC	2 cut(s)	316, 401
RseI	CAYNNNNRTG	1 cut(s)	360
SaqAI	TTAA	1 cut(s)	429
SatI	GCNGC	2 cut(s)	6, 215
Sau3AI	GATC	2 cut(s)	352, 439
Sau96I	GGNCC	1 cut(s)	509
SchI	GAGTC	1 cut(s)	622
ScrFI	CCNGG	1 cut(s)	414
SduI	GDGCHC	1 cut(s)	421
SetI	ASST	6 cut(s)	10, 27, 166, 453, 620, 642
SfaNI	GCATC	1 cut(s)	128
SfcI	CTRYAG	1 cut(s)	446
SinI	GGWCC	1 cut(s)	509
SmiMI	CAYNNNNRTG	1 cut(s)	360
SmlI	CTYRAG	1 cut(s)	65
SmoI	CTYRAG	1 cut(s)	65
Sse9I	AATT	4 cut(s)	34, 144, 275, 320
SseBI	AGGCCT	2 cut(s)	63, 606
SsiI	CCGC	1 cut(s)	283
SspMI	CTAG	1 cut(s)	422
StuI	AGGCCT	2 cut(s)	63, 606
StyD4I	CCNGG	1 cut(s)	412
TaaI	ACNGT	4 cut(s)	242, 291, 315, 571
TaqI	TCGA	1 cut(s)	72
TasI	AATT	4 cut(s)	34, 144, 275, 320
TatI	WGTACW	2 cut(s)	315, 400
TfiI	GAWTC	1 cut(s)	468
Tru1I	TTAA	1 cut(s)	429
Tru9I	TTAA	1 cut(s)	429
TscAI	CASTG	2 cut(s)	267, 294
TseI	GCWGC	2 cut(s)	5, 214
TspDTI	ATGAA	2 cut(s)	207, 368
TspGWI	ACGGA	1 cut(s)	511
TspRI	CASTG	2 cut(s)	267, 294
VpaK11BI	GGWCC	1 cut(s)	509
XspI	CTAG	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.