Prupe.1G037300_v2.0.a1

WAT1-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Forward (+)
2592603 .. 2595298
2696 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G037300.1_v2.0.a1.CDS.3

Sequence Viewer

Length: 885 bp
ATGGCACAGGAGGCATGTAGTAACTTTGGGGGAGTTTACAGGAAGTTCAAGCCACACCTCCTCATGGTTTTAGCCCAGGTGGCCTCTACATTTCTATATTTTCTCACAGAAGCTTCTTTCAATCATGGGATGAACCCTCATGTCTACATAACATATGGACATATTGTGTCCGGCCTAGTGATGTTCCCTTTTGCCTATGTTCTTGAAAGAAAACAGAGACCAAAGCTCACAATTGCTCTTTTCTTGGAACTTTTTGTTCTTTCTCTTCTTGGGGTGGGTTTGACTTTAAACATGTTGGAGGTTCTTGATCTTCGAAGTCCTCGAGGGTTAGAGAAAGTTTTGGGAACCCTCGTCTCCTTAGCCGGTGTAATCACCATGACATTGTACAAGGGATTGAAATTTAGATACATACCTGAATTTGAAAAAAGAACGAAAGAGAAATTGATTAATAATGATGATTACTTACCAGAAAATCAGAGTTTAAGAGAAAGAAGAAGTCATGAAGCTTTTTTTGTGGGTTCAATTCTAACTGTTGCATGCTGCATAACATGGTCTATATGGTACATTATGCAGGCAATCACGTTGGAAAGATATCCTGCTCAACTGTCACTGACAACATGGATGGGCTTCATAGGGGCAGCACAACCAGCTGTCTTCACAGTGTGCATAGAACATAGACGGGCAGCTTGGGCAATTGGATTCAACATTGACCTCTGGTCCTATTATATTCTCATAGTAGGGGCATTTAGTGTCATCCTTGGCCTATACTTGCTATTGTGGGGAAAAGAAAGTGATGAAGTTTACATCAACTCAGAAGAGCACAAGGATAAAAACATACAGAAAATCACTTCAGCTAAGACCGATGTGCTACATGATGAACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EamA

Protein Analysis

295

Amino Acids

33.58

Weight (kDa)

7.69

Isoelectric Point (pI)

37.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 321
AccI GTMKAC 1 cut(s) 144
AcsI RAATTY 2 cut(s) 398, 416
AcuI CTGAAG 1 cut(s) 834
AdeI CACNNNGTG 1 cut(s) 663
AfaI GTAC 2 cut(s) 386, 563
AfiI CCNNNNNNNGG 1 cut(s) 64
AflIII ACRYGT 1 cut(s) 291
AgsI TTSAA 7 cut(s) 49, 121, 206, 397, 422, 522, 703
AhdI GACNNNNNGTC 1 cut(s) 715
AjnI CCWGG 1 cut(s) 75
AluBI AGCT 6 cut(s) 113, 226, 506, 650, 686, 854
AluI AGCT 6 cut(s) 113, 226, 506, 650, 686, 854
Alw21I GWGCWC 1 cut(s) 822
Alw26I GTCTC 2 cut(s) 211, 358
Ama87I CYCGRG 1 cut(s) 321
AoxI GGCC 3 cut(s) 81, 172, 760
ApeKI GCWGC 3 cut(s) 540, 638, 683
ApoI RAATTY 2 cut(s) 398, 416
AseI ATTAAT 1 cut(s) 447
AspS9I GGNCC 1 cut(s) 717
AsuHPI GGTGA 1 cut(s) 364
AsuII TTCGAA 1 cut(s) 313
AvaI CYCGRG 1 cut(s) 321
AvaII GGWCC 1 cut(s) 717
BbsI GAAGAC 1 cut(s) 646
Bbv12I GWGCWC 1 cut(s) 822
BbvI GCAGC 3 cut(s) 527, 650, 695
BccI CCATC 1 cut(s) 616
BciT130I CCWGG 1 cut(s) 77
BcoDI GTCTC 2 cut(s) 211, 358
BfaI CTAG 1 cut(s) 176
BglI GCCNNNNNGGC 1 cut(s) 80
BisI GCNGC 3 cut(s) 541, 639, 684
BlsI GCNGC 3 cut(s) 542, 640, 685
Bme1390I CCNGG 1 cut(s) 77
Bme18I GGWCC 1 cut(s) 717
BmeRI GACNNNNNGTC 1 cut(s) 715
BmeT110I CYCGRG 1 cut(s) 321
BmgT120I GGNCC 1 cut(s) 717
BmiI GGNNCC 1 cut(s) 346
BmrFI CCNGG 1 cut(s) 77
BpiI GAAGAC 1 cut(s) 646
Bpu10I CCTNAGC 1 cut(s) 358
Bpu14I TTCGAA 1 cut(s) 313
BsaI GGTCTC 1 cut(s) 211
BsaJI CCNNGG 2 cut(s) 75, 757
Bsc4I CCNNNNNNNGG 1 cut(s) 64
Bse118I RCCGGY 1 cut(s) 362
BseBI CCWGG 1 cut(s) 77
BseDI CCNNGG 2 cut(s) 75, 757
BseGI GGATG 3 cut(s) 135, 627, 753
BseLI CCNNNNNNNGG 1 cut(s) 64
BseMII CTCAG 1 cut(s) 825
BseRI GAGGAG 1 cut(s) 50
BseXI GCAGC 3 cut(s) 527, 650, 695
BshFI GGCC 3 cut(s) 83, 174, 762
BsiHKAI GWGCWC 1 cut(s) 822
BsiHKCI CYCGRG 1 cut(s) 321
BsiSI CCGG 2 cut(s) 171, 363
BslI CCNNNNNNNGG 1 cut(s) 64
BsmAI GTCTC 2 cut(s) 211, 358
BsmBI CGTCTC 1 cut(s) 358
BsnI GGCC 3 cut(s) 83, 174, 762
Bso31I GGTCTC 1 cut(s) 211
BsoBI CYCGRG 1 cut(s) 321
Bsp119I TTCGAA 1 cut(s) 313
Bsp1286I GDGCHC 1 cut(s) 822
Bsp1407I TGTACA 1 cut(s) 384
Bsp143I GATC 1 cut(s) 307
BspANI GGCC 3 cut(s) 83, 174, 762
BspCNI CTCAG 1 cut(s) 824
BspHI TCATGA 1 cut(s) 499
BspLI GGNNCC 1 cut(s) 346
BspQI GCTCTTC 1 cut(s) 810
BspT104I TTCGAA 1 cut(s) 313
BspTNI GGTCTC 1 cut(s) 211
BsrFI RCCGGY 1 cut(s) 362
BsrGI TGTACA 1 cut(s) 384
BssAI RCCGGY 1 cut(s) 362
BssECI CCNNGG 2 cut(s) 75, 757
BssMI GATC 1 cut(s) 307
BssT1I CCWWGG 1 cut(s) 757
Bst2UI CCWGG 1 cut(s) 77
Bst4CI ACNGT 3 cut(s) 532, 606, 661
Bst6I CTCTTC 2 cut(s) 270, 810
BstAUI TGTACA 1 cut(s) 384
BstBI TTCGAA 1 cut(s) 313
BstC8I GCNNGC 2 cut(s) 538, 573
BstDEI CTNAG 3 cut(s) 358, 811, 855
BstF5I GGATG 3 cut(s) 135, 627, 753
BstKTI GATC 1 cut(s) 310
BstMAI GTCTC 2 cut(s) 211, 358
BstMBI GATC 1 cut(s) 307
BstMWI GCNNNNNNNGC 4 cut(s) 11, 80, 647, 689
BstNI CCWGG 1 cut(s) 77
BstNSI RCATGY 3 cut(s) 18, 295, 540
BstSCI CCNGG 1 cut(s) 75
BstV1I GCAGC 3 cut(s) 527, 650, 695
BstV2I GAAGAC 1 cut(s) 646
BsuRI GGCC 3 cut(s) 83, 174, 762
BtsCI GGATG 3 cut(s) 135, 627, 753
BtsIMutI CAGTG 2 cut(s) 608, 666
Cac8I GCNNGC 2 cut(s) 538, 573
CciI TCATGA 1 cut(s) 499
Cfr10I RCCGGY 1 cut(s) 362
Cfr13I GGNCC 1 cut(s) 717
Csp6I GTAC 2 cut(s) 385, 562
CviQI GTAC 2 cut(s) 385, 562
DdeI CTNAG 3 cut(s) 358, 811, 855
DpnI GATC 1 cut(s) 309
DpnII GATC 1 cut(s) 307
DraI TTTAAA 1 cut(s) 288
DraIII CACNNNGTG 1 cut(s) 663
DriI GACNNNNNGTC 1 cut(s) 715
Eam1104I CTCTTC 2 cut(s) 270, 810
Eam1105I GACNNNNNGTC 1 cut(s) 715
EarI CTCTTC 2 cut(s) 270, 810
Eco130I CCWWGG 1 cut(s) 757
Eco31I GGTCTC 1 cut(s) 211
Eco32I GATATC 1 cut(s) 593
Eco47I GGWCC 1 cut(s) 717
Eco57I CTGAAG 1 cut(s) 834
Eco88I CYCGRG 1 cut(s) 321
EcoRII CCWGG 1 cut(s) 75
EcoRV GATATC 1 cut(s) 593
EcoT14I CCWWGG 1 cut(s) 757
ErhI CCWWGG 1 cut(s) 757
Esp3I CGTCTC 1 cut(s) 358
FauNDI CATATG 1 cut(s) 154
FblI GTMKAC 1 cut(s) 144
Fnu4HI GCNGC 3 cut(s) 541, 639, 684
FokI GGATG 3 cut(s) 142, 634, 740
Fsp4HI GCNGC 3 cut(s) 541, 639, 684
FspBI CTAG 1 cut(s) 176
GluI GCNGC 3 cut(s) 541, 639, 684
HaeIII GGCC 3 cut(s) 83, 174, 762
HapII CCGG 2 cut(s) 171, 363
HindIII AAGCTT 2 cut(s) 111, 504
HinfI GANTC 1 cut(s) 699
HpaII CCGG 2 cut(s) 171, 363
HphI GGTGA 1 cut(s) 364
Hpy166II GTNNAC 3 cut(s) 37, 145, 802
Hpy188I TCNGA 2 cut(s) 477, 814
Hpy188III TCNNGA 3 cut(s) 203, 305, 500
Hpy8I GTNNAC 3 cut(s) 37, 145, 802
HpyCH4III ACNGT 3 cut(s) 532, 606, 661
HpyCH4IV ACGT 1 cut(s) 581
HpyCH4V TGCA 4 cut(s) 536, 543, 571, 666
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 80, 647, 689
HpyF3I CTNAG 3 cut(s) 358, 811, 855
HpySE526I ACGT 1 cut(s) 581
Kzo9I GATC 1 cut(s) 307
LguI GCTCTTC 1 cut(s) 810
Lsp1109I GCAGC 3 cut(s) 527, 650, 695
MaeI CTAG 1 cut(s) 176
MaeII ACGT 1 cut(s) 581
MaeIII GTNAC 2 cut(s) 20, 606
MalI GATC 1 cut(s) 309
MboI GATC 1 cut(s) 307
MboII GAAGA 5 cut(s) 257, 302, 504, 646, 827
MfeI CAATTG 2 cut(s) 231, 693
MhlI GDGCHC 1 cut(s) 822
MluCI AATT 6 cut(s) 231, 398, 416, 440, 522, 693
MmeI TCCRAC 2 cut(s) 276, 564
MseI TTAA 3 cut(s) 287, 447, 482
MspA1I CMGCKG 1 cut(s) 650
MspI CCGG 2 cut(s) 171, 363
MspR9I CCNGG 1 cut(s) 77
MunI CAATTG 2 cut(s) 231, 693
MvaI CCWGG 1 cut(s) 77
MwoI GCNNNNNNNGC 4 cut(s) 11, 80, 647, 689
NdeI CATATG 1 cut(s) 154
NdeII GATC 1 cut(s) 307
NlaIV GGNNCC 1 cut(s) 346
NmuCI GTSAC 1 cut(s) 606
NspI RCATGY 3 cut(s) 18, 295, 540
NspV TTCGAA 1 cut(s) 313
PaeI GCATGC 1 cut(s) 540
PaeR7I CTCGAG 1 cut(s) 321
PagI TCATGA 1 cut(s) 499
PciI ACATGT 1 cut(s) 291
PciSI GCTCTTC 1 cut(s) 810
PcsI WCGNNNNNNNCGW 1 cut(s) 319
PfeI GAWTC 1 cut(s) 699
PkrI GCNGC 3 cut(s) 542, 640, 685
PscI ACATGT 1 cut(s) 291
PshBI ATTAAT 1 cut(s) 447
Psp6I CCWGG 1 cut(s) 75
PspGI CCWGG 1 cut(s) 75
PspN4I GGNNCC 1 cut(s) 346
PspPI GGNCC 1 cut(s) 717
PspXI VCTCGAGB 1 cut(s) 321
PvuII CAGCTG 1 cut(s) 650
RsaI GTAC 2 cut(s) 386, 563
RsaNI GTAC 2 cut(s) 385, 562
SapI GCTCTTC 1 cut(s) 810
SaqAI TTAA 3 cut(s) 287, 447, 482
SatI GCNGC 3 cut(s) 541, 639, 684
Sau3AI GATC 1 cut(s) 307
Sau96I GGNCC 1 cut(s) 717
ScrFI CCNGG 1 cut(s) 77
SduI GDGCHC 1 cut(s) 822
Sfr274I CTCGAG 1 cut(s) 321
SfuI TTCGAA 1 cut(s) 313
SinI GGWCC 1 cut(s) 717
SlaI CTCGAG 1 cut(s) 321
SmlI CTYRAG 1 cut(s) 321
SmoI CTYRAG 1 cut(s) 321
SphI GCATGC 1 cut(s) 540
Sse9I AATT 6 cut(s) 231, 398, 416, 440, 522, 693
SspMI CTAG 1 cut(s) 176
StyD4I CCNGG 1 cut(s) 75
StyI CCWWGG 1 cut(s) 757
TaaI ACNGT 3 cut(s) 532, 606, 661
TaiI ACGT 1 cut(s) 584
TaqI TCGA 2 cut(s) 313, 322
TaqII GACCGA 1 cut(s) 875
TasI AATT 6 cut(s) 231, 398, 416, 440, 522, 693
TatI WGTACW 1 cut(s) 384
TfiI GAWTC 1 cut(s) 699
Tru1I TTAA 3 cut(s) 287, 447, 482
Tru9I TTAA 3 cut(s) 287, 447, 482
TscAI CASTG 2 cut(s) 615, 666
TseFI GTSAC 1 cut(s) 606
TseI GCWGC 3 cut(s) 540, 638, 683
Tsp45I GTSAC 1 cut(s) 606
TspDTI ATGAA 4 cut(s) 146, 516, 619, 810
TspRI CASTG 2 cut(s) 615, 666
VpaK11BI GGWCC 1 cut(s) 717
VspI ATTAAT 1 cut(s) 447
XapI RAATTY 2 cut(s) 398, 416
XceI RCATGY 3 cut(s) 18, 295, 540
XhoI CTCGAG 1 cut(s) 321
XmiI GTMKAC 1 cut(s) 144
XspI CTAG 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.