Prupe.1G048600_v2.0.a1
MADS Family

MADS-box transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Forward (+)
3427285 .. 3428419
1135 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G048600.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 603 bp
ATGGGAAAGAAGAAGATTGCTATTGAGAAGATTGAAAATAAGCAGTCTCGCGCTGTGACTTTTTCAAGGAGAAGGAATGGGCTCTTCAAGAAAGCCAAGGATTTCTCAAATCTCTCCGGCTCATCCGTTGCAATTCTTGTAATCTCTCCAGCGGGCCGCCGTTACACTTATGCCTCTCCTTCCTTTGACTCAGTGGTCGACCAATTCCTCTCCGAAACCATTGATGGCTCTTCCACTGTGACTGCCGGTTCTTCTTCATTTGACTATGTGGATGACCAATTTCTCCCCACCACCAATGCTGGATCAACTTCCGTTGATTCTATGGTGGATCAATTCATCTCCACCACGGCTGCCTCACCTTCCTATGACCCTGTGATTGACGAGTTTCTGTCCACCGCTATTGGCTCTCCTTCGGTTGACCCCACTGCCGATCAAATCGTGCCCATTGCAACTGTTGGCTCTTCCACCGCCACTCCTTCTGGCTCTTTCCAAGACACATTGAAGGCTTTGTCGGACGTCAACATTGAAGCTTGTAATGATTTGGAAGAGTTGATGACTTTGAAAAATAACTTGGAGCAAATCATCAGAGAGAGACGAGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04011 ko04111 map04011 map04111
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

201

Amino Acids

21.44

Weight (kDa)

4.72

Isoelectric Point (pI)

58.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 194
AatII GACGTC 1 cut(s) 519
AccI GTMKAC 1 cut(s) 198
AccII CGCG 1 cut(s) 51
AciI CCGC 4 cut(s) 152, 157, 396, 468
AclWI GGATC 2 cut(s) 310, 336
AcyI GRCGYC 1 cut(s) 516
AgsI TTSAA 6 cut(s) 35, 66, 88, 502, 527, 562
AjuI GAANNNNNNNTTGG 2 cut(s) 554, 586
AluBI AGCT 1 cut(s) 530
AluI AGCT 1 cut(s) 530
Alw26I GTCTC 2 cut(s) 51, 586
AlwI GGATC 2 cut(s) 310, 336
AoxI GGCC 1 cut(s) 154
ApeKI GCWGC 1 cut(s) 350
AspLEI GCGC 1 cut(s) 53
AspS9I GGNCC 1 cut(s) 154
AsuHPI GGTGA 1 cut(s) 348
BaeGI GKGCMC 1 cut(s) 444
BanII GRGCYC 1 cut(s) 84
BbvI GCAGC 1 cut(s) 337
BccI CCATC 1 cut(s) 218
BceAI ACGGC 2 cut(s) 144, 363
BcoDI GTCTC 2 cut(s) 51, 586
BisI GCNGC 2 cut(s) 157, 351
BlsI GCNGC 2 cut(s) 158, 352
BmgT120I GGNCC 1 cut(s) 154
BpmI CTGGAG 1 cut(s) 132
BsaHI GRCGYC 1 cut(s) 516
BsaJI CCNNGG 2 cut(s) 96, 345
BsaXI ACNNNNNCTCC 2 cut(s) 457, 487
Bse118I RCCGGY 1 cut(s) 245
Bse3DI GCAATG 1 cut(s) 444
BseDI CCNNGG 2 cut(s) 96, 345
BseGI GGATG 2 cut(s) 122, 277
BseMI GCAATG 1 cut(s) 444
BseMII CTCAG 1 cut(s) 204
BseSI GKGCMC 1 cut(s) 444
BseXI GCAGC 1 cut(s) 337
Bsh1236I CGCG 1 cut(s) 51
BshFI GGCC 1 cut(s) 156
BsiSI CCGG 2 cut(s) 117, 246
BsmAI GTCTC 2 cut(s) 51, 586
BsmBI CGTCTC 1 cut(s) 586
BsnI GGCC 1 cut(s) 156
Bsp1286I GDGCHC 2 cut(s) 84, 444
Bsp143I GATC 3 cut(s) 302, 328, 430
BspACI CCGC 4 cut(s) 152, 157, 396, 468
BspANI GGCC 1 cut(s) 156
BspCNI CTCAG 1 cut(s) 203
BspFNI CGCG 1 cut(s) 51
BspPI GGATC 2 cut(s) 310, 336
BspQI GCTCTTC 3 cut(s) 89, 235, 466
BsrDI GCAATG 1 cut(s) 444
BsrFI RCCGGY 1 cut(s) 245
BssAI RCCGGY 1 cut(s) 245
BssECI CCNNGG 2 cut(s) 96, 345
BssMI GATC 3 cut(s) 302, 328, 430
BssNI GRCGYC 1 cut(s) 516
BssT1I CCWWGG 1 cut(s) 96
Bst4CI ACNGT 2 cut(s) 238, 454
Bst6I CTCTTC 4 cut(s) 89, 235, 466, 540
BstACI GRCGYC 1 cut(s) 516
BstC8I GCNNGC 1 cut(s) 154
BstDEI CTNAG 1 cut(s) 190
BstDSI CCRYGG 1 cut(s) 345
BstF5I GGATG 2 cut(s) 122, 277
BstFNI CGCG 1 cut(s) 51
BstHHI GCGC 1 cut(s) 53
BstKTI GATC 3 cut(s) 305, 331, 433
BstMAI GTCTC 2 cut(s) 51, 586
BstMBI GATC 3 cut(s) 302, 328, 430
BstSLI GKGCMC 1 cut(s) 444
BstUI CGCG 1 cut(s) 51
BstV1I GCAGC 1 cut(s) 337
BsuRI GGCC 1 cut(s) 156
BtgI CCRYGG 1 cut(s) 345
BtsCI GGATG 2 cut(s) 122, 277
BtsI GCAGTG 1 cut(s) 423
BtsIMutI CAGTG 3 cut(s) 198, 234, 423
Cac8I GCNNGC 1 cut(s) 154
CfoI GCGC 1 cut(s) 53
Cfr10I RCCGGY 1 cut(s) 245
Cfr13I GGNCC 1 cut(s) 154
CspCI CAANNNNNGTGG 2 cut(s) 382, 417
DdeI CTNAG 1 cut(s) 190
DpnI GATC 3 cut(s) 304, 330, 432
DpnII GATC 3 cut(s) 302, 328, 430
DrdI GACNNNNNNGTC 1 cut(s) 194
DseDI GACNNNNNNGTC 1 cut(s) 194
Eam1104I CTCTTC 4 cut(s) 89, 235, 466, 540
EarI CTCTTC 4 cut(s) 89, 235, 466, 540
Eco130I CCWWGG 1 cut(s) 96
Eco24I GRGCYC 1 cut(s) 84
EcoT14I CCWWGG 1 cut(s) 96
EcoT38I GRGCYC 1 cut(s) 84
ErhI CCWWGG 1 cut(s) 96
Esp3I CGTCTC 1 cut(s) 586
FaiI YATR 4 cut(s) 171, 267, 323, 366
FauI CCCGC 1 cut(s) 145
FblI GTMKAC 1 cut(s) 198
Fnu4HI GCNGC 2 cut(s) 157, 351
FokI GGATG 2 cut(s) 109, 284
FriOI GRGCYC 1 cut(s) 84
Fsp4HI GCNGC 2 cut(s) 157, 351
GlaI GCGC 1 cut(s) 52
GluI GCNGC 2 cut(s) 157, 351
GsuI CTGGAG 1 cut(s) 132
HaeIII GGCC 1 cut(s) 156
HapII CCGG 2 cut(s) 117, 246
HhaI GCGC 1 cut(s) 53
Hin1I GRCGYC 1 cut(s) 516
Hin6I GCGC 1 cut(s) 51
HinP1I GCGC 1 cut(s) 51
HincII GTYRAC 3 cut(s) 199, 418, 520
HindII GTYRAC 3 cut(s) 199, 418, 520
HindIII AAGCTT 1 cut(s) 528
HinfI GANTC 2 cut(s) 188, 317
HpaII CCGG 2 cut(s) 117, 246
HphI GGTGA 1 cut(s) 348
Hpy166II GTNNAC 4 cut(s) 199, 393, 418, 520
Hpy188I TCNGA 3 cut(s) 214, 514, 587
Hpy188III TCNNGA 1 cut(s) 88
Hpy8I GTNNAC 4 cut(s) 199, 393, 418, 520
HpyAV CCTTC 6 cut(s) 66, 189, 369, 420, 486, 496
HpyCH4III ACNGT 2 cut(s) 238, 454
HpyCH4IV ACGT 1 cut(s) 516
HpyCH4V TGCA 2 cut(s) 131, 449
HpyF3I CTNAG 1 cut(s) 190
HpySE526I ACGT 1 cut(s) 516
Hsp92I GRCGYC 1 cut(s) 516
HspAI GCGC 1 cut(s) 51
Kzo9I GATC 3 cut(s) 302, 328, 430
LguI GCTCTTC 3 cut(s) 89, 235, 466
LmnI GCTCC 1 cut(s) 574
LpnPI CCDG 6 cut(s) 130, 162, 259, 285, 384, 465
Lsp1109I GCAGC 1 cut(s) 337
MaeII ACGT 1 cut(s) 516
MaeIII GTNAC 3 cut(s) 55, 161, 238
MalI GATC 3 cut(s) 304, 330, 432
MboI GATC 3 cut(s) 302, 328, 430
MboII GAAGA 9 cut(s) 22, 25, 40, 76, 222, 243, 246, 453, 557
MhlI GDGCHC 2 cut(s) 84, 444
MluCI AATT 4 cut(s) 132, 203, 278, 332
MlyI GAGTC 1 cut(s) 182
MmeI TCCRAC 1 cut(s) 492
MnlI CCTC 4 cut(s) 184, 218, 364, 590
MspA1I CMGCKG 1 cut(s) 152
MspI CCGG 2 cut(s) 117, 246
MvnI CGCG 1 cut(s) 51
NdeII GATC 3 cut(s) 302, 328, 430
NmuCI GTSAC 2 cut(s) 55, 238
PciSI GCTCTTC 3 cut(s) 89, 235, 466
PfeI GAWTC 1 cut(s) 317
PkrI GCNGC 2 cut(s) 158, 352
PleI GAGTC 1 cut(s) 182
PpsI GAGTC 1 cut(s) 182
PspPI GGNCC 1 cut(s) 154
SalI GTCGAC 1 cut(s) 197
SapI GCTCTTC 3 cut(s) 89, 235, 466
SatI GCNGC 2 cut(s) 157, 351
Sau3AI GATC 3 cut(s) 302, 328, 430
Sau96I GGNCC 1 cut(s) 154
SchI GAGTC 1 cut(s) 182
SduI GDGCHC 2 cut(s) 84, 444
SetI ASST 3 cut(s) 361, 519, 532
Sse9I AATT 4 cut(s) 132, 203, 278, 332
SsiI CCGC 4 cut(s) 152, 157, 396, 468
StyI CCWWGG 1 cut(s) 96
TaaI ACNGT 2 cut(s) 238, 454
TaiI ACGT 1 cut(s) 519
TaqI TCGA 1 cut(s) 198
TasI AATT 4 cut(s) 132, 203, 278, 332
TauI GCSGC 1 cut(s) 159
TfiI GAWTC 1 cut(s) 317
TscAI CASTG 3 cut(s) 198, 241, 430
TseFI GTSAC 2 cut(s) 55, 238
TseI GCWGC 1 cut(s) 350
Tsp45I GTSAC 2 cut(s) 55, 238
TspDTI ATGAA 2 cut(s) 246, 325
TspGWI ACGGA 2 cut(s) 115, 301
TspRI CASTG 3 cut(s) 198, 241, 430
XmiI GTMKAC 1 cut(s) 198
ZraI GACGTC 1 cut(s) 517
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.