Prupe.1G054500_v2.0.a1
RLK Family

cysteine-rich RLK (RECEPTOR-like protein kinase) 8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Forward (+)
3840248 .. 3840848
601 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G054500.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 351 bp
ATGGGTGACAACAAATCAAACACATATCAAACATCAGCTTCCGACAACGAAGCCCCCAGGTTCACAACTGAAGAATACAGTCAACTTAAGTCTCTTCTTCACAATGGTACAGTATCTCCTTTTTGCGCCAGCGCCAATAAGTCATCACCATCCACAACATCTTGGATACTTGACAGCGGAGTCACCGATCATGTCGCTCCTCCTTCTATGTTAAACACATTGAAAGTTGCACCTTTGTTTTCCCCACATTCGGTTTACATACAGGTACTTCCTGATGGTATGGTAATCGAGTTAATAATGAGCAAATTCCAGACCCTTTGGGCCAATATGTTAGAACCTTTATGCTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_3 Retrotrans_gag

Protein Analysis

117

Amino Acids

12.74

Weight (kDa)

5.1

Isoelectric Point (pI)

52.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 179
AciI CCGC 1 cut(s) 177
AcsI RAATTY 1 cut(s) 305
AcuI CTGAAG 1 cut(s) 90
AfaI GTAC 2 cut(s) 109, 267
AfiI CCNNNNNNNGG 1 cut(s) 250
AflII CTTAAG 1 cut(s) 86
AgsI TTSAA 1 cut(s) 223
AjnI CCWGG 1 cut(s) 56
AluBI AGCT 1 cut(s) 38
AluI AGCT 1 cut(s) 38
Alw26I GTCTC 1 cut(s) 96
AoxI GGCC 1 cut(s) 321
ApoI RAATTY 1 cut(s) 305
AspLEI GCGC 2 cut(s) 128, 134
AspS9I GGNCC 1 cut(s) 321
AsuHPI GGTGA 3 cut(s) 17, 138, 175
BccI CCATC 2 cut(s) 157, 269
BciT130I CCWGG 1 cut(s) 58
BciVI GTATCC 1 cut(s) 159
BcoDI GTCTC 1 cut(s) 96
BfoI RGCGCY 1 cut(s) 135
BfrI CTTAAG 1 cut(s) 86
BfuI GTATCC 1 cut(s) 159
Bme1390I CCNGG 1 cut(s) 58
BmgT120I GGNCC 1 cut(s) 321
BmrFI CCNGG 1 cut(s) 58
BsaJI CCNNGG 1 cut(s) 56
BsaXI ACNNNNNCTCC 2 cut(s) 100, 130
Bsc4I CCNNNNNNNGG 1 cut(s) 250
BseBI CCWGG 1 cut(s) 58
BseDI CCNNGG 1 cut(s) 56
BseGI GGATG 1 cut(s) 149
BseLI CCNNNNNNNGG 1 cut(s) 250
BseRI GAGGAG 1 cut(s) 189
BshFI GGCC 1 cut(s) 323
BslI CCNNNNNNNGG 1 cut(s) 250
BsmAI GTCTC 1 cut(s) 96
BsnI GGCC 1 cut(s) 323
Bsp143I GATC 1 cut(s) 187
BspACI CCGC 1 cut(s) 177
BspANI GGCC 1 cut(s) 323
BspTI CTTAAG 1 cut(s) 86
BssECI CCNNGG 1 cut(s) 56
BssMI GATC 1 cut(s) 187
Bst2UI CCWGG 1 cut(s) 58
Bst4CI ACNGT 2 cut(s) 80, 112
Bst6I CTCTTC 1 cut(s) 99
BstAFI CTTAAG 1 cut(s) 86
BstC8I GCNNGC 1 cut(s) 130
BstF5I GGATG 1 cut(s) 149
BstH2I RGCGCY 1 cut(s) 135
BstHHI GCGC 2 cut(s) 128, 134
BstKTI GATC 1 cut(s) 190
BstMAI GTCTC 1 cut(s) 96
BstMBI GATC 1 cut(s) 187
BstNI CCWGG 1 cut(s) 58
BstSCI CCNGG 1 cut(s) 56
BsuI GTATCC 1 cut(s) 159
BsuRI GGCC 1 cut(s) 323
BtsCI GGATG 1 cut(s) 149
Cac8I GCNNGC 1 cut(s) 130
CfoI GCGC 2 cut(s) 128, 134
Cfr13I GGNCC 1 cut(s) 321
Csp6I GTAC 2 cut(s) 108, 266
CviAII CATG 1 cut(s) 191
CviJI RGCY 3 cut(s) 38, 53, 323
CviKI_1 RGCY 3 cut(s) 38, 53, 323
CviQI GTAC 2 cut(s) 108, 266
DpnI GATC 1 cut(s) 189
DpnII GATC 1 cut(s) 187
DrdI GACNNNNNNGTC 1 cut(s) 179
DseDI GACNNNNNNGTC 1 cut(s) 179
Eam1104I CTCTTC 1 cut(s) 99
EarI CTCTTC 1 cut(s) 99
Eco57I CTGAAG 1 cut(s) 90
EcoRII CCWGG 1 cut(s) 56
FaeI CATG 1 cut(s) 194
FaiI YATR 7 cut(s) 25, 192, 209, 260, 281, 329, 343
FatI CATG 1 cut(s) 190
FokI GGATG 1 cut(s) 136
GlaI GCGC 2 cut(s) 127, 133
HaeII RGCGCY 1 cut(s) 135
HaeIII GGCC 1 cut(s) 323
HhaI GCGC 2 cut(s) 128, 134
Hin1II CATG 1 cut(s) 194
Hin6I GCGC 2 cut(s) 126, 132
HinP1I GCGC 2 cut(s) 126, 132
HincII GTYRAC 1 cut(s) 83
HindII GTYRAC 1 cut(s) 83
HinfI GANTC 1 cut(s) 180
HphI GGTGA 3 cut(s) 17, 138, 175
Hpy166II GTNNAC 3 cut(s) 63, 83, 256
Hpy188I TCNGA 1 cut(s) 43
Hpy188III TCNNGA 2 cut(s) 272, 310
Hpy8I GTNNAC 3 cut(s) 63, 83, 256
HpyAV CCTTC 1 cut(s) 213
HpyCH4III ACNGT 2 cut(s) 80, 112
HpyCH4V TGCA 1 cut(s) 230
Hsp92II CATG 1 cut(s) 194
HspAI GCGC 2 cut(s) 126, 132
Kzo9I GATC 1 cut(s) 187
LmnI GCTCC 1 cut(s) 202
LpnPI CCDG 6 cut(s) 43, 70, 142, 248, 285, 323
MaeIII GTNAC 2 cut(s) 5, 181
MalI GATC 1 cut(s) 189
MboI GATC 1 cut(s) 187
MboII GAAGA 3 cut(s) 83, 86, 89
MluCI AATT 1 cut(s) 305
MlyI GAGTC 1 cut(s) 189
MmeI TCCRAC 1 cut(s) 66
MnlI CCTC 1 cut(s) 210
MseI TTAA 3 cut(s) 87, 212, 293
MspA1I CMGCKG 1 cut(s) 177
MspCI CTTAAG 1 cut(s) 86
MspR9I CCNGG 1 cut(s) 58
MvaI CCWGG 1 cut(s) 58
NdeII GATC 1 cut(s) 187
NlaIII CATG 1 cut(s) 194
NmuCI GTSAC 2 cut(s) 5, 181
PleI GAGTC 1 cut(s) 188
PpsI GAGTC 1 cut(s) 188
Psp6I CCWGG 1 cut(s) 56
PspGI CCWGG 1 cut(s) 56
PspPI GGNCC 1 cut(s) 321
RsaI GTAC 2 cut(s) 109, 267
RsaNI GTAC 2 cut(s) 108, 266
SaqAI TTAA 3 cut(s) 87, 212, 293
Sau3AI GATC 1 cut(s) 187
Sau96I GGNCC 1 cut(s) 321
SchI GAGTC 1 cut(s) 189
ScrFI CCNGG 1 cut(s) 58
SetI ASST 5 cut(s) 40, 62, 235, 267, 340
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
Sse9I AATT 1 cut(s) 305
SsiI CCGC 1 cut(s) 177
StyD4I CCNGG 1 cut(s) 56
TaaI ACNGT 2 cut(s) 80, 112
TaqI TCGA 1 cut(s) 288
TasI AATT 1 cut(s) 305
Tru1I TTAA 3 cut(s) 87, 212, 293
Tru9I TTAA 3 cut(s) 87, 212, 293
TseFI GTSAC 2 cut(s) 5, 181
Tsp45I GTSAC 2 cut(s) 5, 181
Vha464I CTTAAG 1 cut(s) 86
XapI RAATTY 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.