Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

4111842 .. 4114761

Gene Structure 2920 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G057900.1_v2.0.a1.CDS.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGTTGAAAACTTGGAGAGCACGCCTTTTTGTTTGTTGGGAACTTGAGGGAGGAAAACAACATGTTGGAAACTTGGGAGAGGAGATCAGCATCTTGTTGGAAACAAAAACTCTGCCTACCGCCGCCTTTTTTCTCTTGATATCCGGTAAAAATAGGCCGAAGAGAGACAATGAGGCTTTGGAGTCGGCAAGAGAACATGGCTGCTTGGCTTCTTGGCTTCTTGGTGTTAACACCCTCAAAATCCAACCTTTCAAGCTCCCTAATCTCGGACCCCGTGATGTTTTAGTTCGACTCAAGGCTGTTGGCATATGCGGCAGTGATGTTCACCACTTCAAGAGAATTCGATATTTAATCCAATTGGAGTGTGCTGGTTTCGTAGAGGAAGTTGGGAGTGAGGTGAAGCATCCGGTGCCTGGTGACCGCGTGGCACTAGAGCCCGGCATCAATTGCAAGCGATGTGAGCTATGCAAACAAGGCCGATATAATCTATGCCCCGAGATGAACAGGTGTGTTTATTTTAATTGTGACTTCTTTGAATATGGGCTATTCTGGATTTTTCTTGGAGAAGGGGCAATATGTGAGCCCTTAAGTGTTGGTGTTCATGCTTGTCATTGGGCTAATGTTGGTCCAGAAACAAATGTTTTGGTCATGGGAGCAGGACCTATAGGACTTATTACATTGTTGGCTCCTCGTGCCTTCGAAGCACCTAGAATTGTCGTGGCGGATGTGAATGACCACCGTTTATTCGTTGCAAAGGCTCTTAGTGCACATGAGATCGTCAAAGTTTCCACAAATATTGAGGAGGTTGCTGAAGAAGTTGCTAAAATAAAAGAAGCTATGGGAACTCGAGTGTATGTAAGCTTCGATTGTGCAGGGTTTAATAAAACCATGGCGACAGCTCTGAGTGCTACTGGTTCCGGTGGCAAAGTTTGCCTTGTGGGAATGGGCCAGAGAGAGTTGACTCTCCCACTCACTTCAGCTGCTGCCAGAAGTAGTAAGGTTGATGTGAAGCCCACGATAACACATCGTTTTGGATTCTCTCAAAAGGAAGTGGAAAAAGCATTTGAAACCAGTGCTGGTGGAGGCAATGCCATTAAGGTCATATTTAATCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003939 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0008150 GO:0008152 GO:0009506 GO:0016491 GO:0016614 GO:0016616 GO:0030054 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00040 ko00051 ko01100 map00040 map00051 map01100

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

372

Amino Acids

40.6

Weight (kDa)

8.34

Isoelectric Point (pI)

25.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	409
AccII	CGCG	1 cut(s)	423
AciI	CCGC	5 cut(s)	120, 123, 312, 421, 722
AcsI	RAATTY	1 cut(s)	339
AcuI	CTGAAG	2 cut(s)	831, 960
AfiI	CCNNNNNNNGG	2 cut(s)	266, 413
AflII	CTTAAG	1 cut(s)	586
AflIII	ACRYGT	1 cut(s)	61
AgsI	TTSAA	5 cut(s)	7, 253, 334, 536, 1067
AjnI	CCWGG	1 cut(s)	412
AluBI	AGCT	6 cut(s)	256, 463, 836, 861, 899, 980
AluI	AGCT	6 cut(s)	256, 463, 836, 861, 899, 980
Alw21I	GWGCWC	2 cut(s)	22, 769
Alw26I	GTCTC	1 cut(s)	159
Alw44I	GTGCAC	1 cut(s)	765
AlwNI	CAGNNNCTG	1 cut(s)	983
Ama87I	CYCGRG	2 cut(s)	494, 846
AoxI	GGCC	3 cut(s)	155, 475, 946
ApaLI	GTGCAC	1 cut(s)	765
ApeKI	GCWGC	3 cut(s)	201, 980, 983
ApoI	RAATTY	1 cut(s)	339
AspS9I	GGNCC	4 cut(s)	269, 626, 659, 946
AsuC2I	CCSGG	1 cut(s)	438
AsuHPI	GGTGA	3 cut(s)	317, 409, 428
AsuII	TTCGAA	1 cut(s)	699
AvaI	CYCGRG	2 cut(s)	494, 846
AvaII	GGWCC	3 cut(s)	269, 626, 659
BaeGI	GKGCMC	1 cut(s)	769
BanI	GGYRCC	1 cut(s)	409
BanII	GRGCYC	2 cut(s)	438, 585
BarI	GAAGNNNNNNTAC	2 cut(s)	845, 877
BauI	CACGAG	1 cut(s)	690
Bbv12I	GWGCWC	2 cut(s)	22, 769
BbvI	GCAGC	3 cut(s)	188, 967, 970
BciT130I	CCWGG	1 cut(s)	414
BcnI	CCSGG	1 cut(s)	438
BcoDI	GTCTC	1 cut(s)	159
BfaI	CTAG	2 cut(s)	431, 708
BfmI	CTRYAG	1 cut(s)	663
BfrI	CTTAAG	1 cut(s)	586
BisI	GCNGC	5 cut(s)	123, 202, 313, 981, 984
BlsI	GCNGC	5 cut(s)	124, 203, 314, 982, 985
Bme1390I	CCNGG	2 cut(s)	414, 438
Bme18I	GGWCC	3 cut(s)	269, 626, 659
BmeT110I	CYCGRG	2 cut(s)	494, 846
BmgT120I	GGNCC	4 cut(s)	269, 626, 659, 946
BmiI	GGNNCC	4 cut(s)	271, 411, 687, 916
BmrFI	CCNGG	2 cut(s)	414, 438
BmsI	GCATC	3 cut(s)	99, 412, 450
Bpu14I	TTCGAA	1 cut(s)	699
BpuEI	CTTGAG	2 cut(s)	65, 278
BpuMI	CCSGG	1 cut(s)	438
BsaBI	GATNNNNATC	1 cut(s)	89
BsaJI	CCNNGG	1 cut(s)	888
BsaWI	WCCGGW	3 cut(s)	143, 406, 917
Bsc4I	CCNNNNNNNGG	2 cut(s)	266, 413
Bse1I	ACTGG	2 cut(s)	916, 1071
Bse3DI	GCAATG	1 cut(s)	1093
Bse8I	GATNNNNATC	1 cut(s)	89
BseBI	CCWGG	1 cut(s)	414
BseDI	CCNNGG	1 cut(s)	888
BseGI	GGATG	2 cut(s)	403, 730
BseJI	GATNNNNATC	1 cut(s)	89
BseLI	CCNNNNNNNGG	2 cut(s)	266, 413
BseMI	GCAATG	1 cut(s)	1093
BseMII	CTCAG	1 cut(s)	893
BseNI	ACTGG	2 cut(s)	916, 1071
BseRI	GAGGAG	3 cut(s)	95, 678, 815
BseSI	GKGCMC	1 cut(s)	769
BseXI	GCAGC	3 cut(s)	188, 967, 970
BsgI	GTGCAG	1 cut(s)	891
Bsh1236I	CGCG	1 cut(s)	423
BshFI	GGCC	3 cut(s)	157, 477, 948
BshNI	GGYRCC	1 cut(s)	409
BsiHKAI	GWGCWC	2 cut(s)	22, 769
BsiHKCI	CYCGRG	2 cut(s)	494, 846
BsiSI	CCGG	4 cut(s)	144, 407, 438, 918
BslI	CCNNNNNNNGG	2 cut(s)	266, 413
BsmAI	GTCTC	1 cut(s)	159
BsnI	GGCC	3 cut(s)	157, 477, 948
BsoBI	CYCGRG	2 cut(s)	494, 846
Bsp119I	TTCGAA	1 cut(s)	699
Bsp1286I	GDGCHC	4 cut(s)	22, 438, 585, 769
Bsp143I	GATC	2 cut(s)	84, 774
Bsp19I	CCATGG	1 cut(s)	888
BspACI	CCGC	5 cut(s)	120, 123, 312, 421, 722
BspANI	GGCC	3 cut(s)	157, 477, 948
BspCNI	CTCAG	1 cut(s)	894
BspFNI	CGCG	1 cut(s)	423
BspLI	GGNNCC	4 cut(s)	271, 411, 687, 916
BspT104I	TTCGAA	1 cut(s)	699
BspT107I	GGYRCC	1 cut(s)	409
BspTI	CTTAAG	1 cut(s)	586
BsrDI	GCAATG	1 cut(s)	1093
BsrI	ACTGG	2 cut(s)	916, 1071
BssECI	CCNNGG	1 cut(s)	888
BssMI	GATC	2 cut(s)	84, 774
BssSI	CACGAG	1 cut(s)	690
BssT1I	CCWWGG	1 cut(s)	888
Bst2BI	CACGAG	1 cut(s)	690
Bst2UI	CCWGG	1 cut(s)	414
Bst4CI	ACNGT	1 cut(s)	740
Bst6I	CTCTTC	1 cut(s)	155
BstAFI	CTTAAG	1 cut(s)	586
BstAPI	GCANNNNNTGC	3 cut(s)	409, 447, 930
BstBI	TTCGAA	1 cut(s)	699
BstC8I	GCNNGC	2 cut(s)	22, 452
BstDEI	CTNAG	2 cut(s)	761, 902
BstDSI	CCRYGG	1 cut(s)	888
BstEII	GGTNACC	1 cut(s)	416
BstF5I	GGATG	2 cut(s)	403, 730
BstFNI	CGCG	1 cut(s)	423
BstKTI	GATC	2 cut(s)	87, 777
BstMAI	GTCTC	1 cut(s)	159
BstMBI	GATC	2 cut(s)	84, 774
BstNI	CCWGG	1 cut(s)	414
BstNSI	RCATGY	1 cut(s)	65
BstPI	GGTNACC	1 cut(s)	416
BstSCI	CCNGG	2 cut(s)	412, 436
BstSFI	CTRYAG	1 cut(s)	663
BstSLI	GKGCMC	1 cut(s)	769
BstUI	CGCG	1 cut(s)	423
BstV1I	GCAGC	3 cut(s)	188, 967, 970
BsuRI	GGCC	3 cut(s)	157, 477, 948
BtgI	CCRYGG	1 cut(s)	888
BtgZI	GCGATG	1 cut(s)	469
BtsCI	GGATG	2 cut(s)	403, 730
BtsI	GCAGTG	1 cut(s)	322
BtsIMutI	CAGTG	2 cut(s)	322, 1078
Cac8I	GCNNGC	2 cut(s)	22, 452
CaiI	CAGNNNCTG	1 cut(s)	983
Cfr13I	GGNCC	4 cut(s)	269, 626, 659, 946
CspCI	CAANNNNNGTGG	2 cut(s)	778, 813
CviAII	CATG	6 cut(s)	62, 197, 602, 649, 770, 889
DdeI	CTNAG	2 cut(s)	761, 902
DpnI	GATC	2 cut(s)	86, 776
DpnII	GATC	2 cut(s)	84, 774
Eam1104I	CTCTTC	1 cut(s)	155
EarI	CTCTTC	1 cut(s)	155
EciI	GGCGGA	1 cut(s)	737
Eco130I	CCWWGG	1 cut(s)	888
Eco24I	GRGCYC	2 cut(s)	438, 585
Eco32I	GATATC	1 cut(s)	141
Eco47I	GGWCC	3 cut(s)	269, 626, 659
Eco57I	CTGAAG	2 cut(s)	831, 960
Eco88I	CYCGRG	2 cut(s)	494, 846
Eco91I	GGTNACC	1 cut(s)	416
EcoO109I	RGGNCCY	1 cut(s)	659
EcoO65I	GGTNACC	1 cut(s)	416
EcoRI	GAATTC	1 cut(s)	339
EcoRII	CCWGG	1 cut(s)	412
EcoRV	GATATC	1 cut(s)	141
EcoT14I	CCWWGG	1 cut(s)	888
EcoT38I	GRGCYC	2 cut(s)	438, 585
ErhI	CCWWGG	1 cut(s)	888
FaeI	CATG	6 cut(s)	65, 200, 605, 652, 773, 892
FalI	AAGNNNNNCTT	2 cut(s)	918, 950
FatI	CATG	6 cut(s)	61, 196, 601, 648, 769, 888
FauNDI	CATATG	1 cut(s)	308
Fnu4HI	GCNGC	5 cut(s)	123, 202, 313, 981, 984
FokI	GGATG	2 cut(s)	390, 737
FriOI	GRGCYC	2 cut(s)	438, 585
Fsp4HI	GCNGC	5 cut(s)	123, 202, 313, 981, 984
FspBI	CTAG	2 cut(s)	431, 708
GluI	GCNGC	5 cut(s)	123, 202, 313, 981, 984
HaeIII	GGCC	3 cut(s)	157, 477, 948
HapII	CCGG	4 cut(s)	144, 407, 438, 918
Hin1II	CATG	6 cut(s)	65, 200, 605, 652, 773, 892
HincII	GTYRAC	2 cut(s)	229, 960
HindII	GTYRAC	2 cut(s)	229, 960
HindIII	AAGCTT	1 cut(s)	859
HinfI	GANTC	4 cut(s)	182, 291, 961, 1035
HpaI	GTTAAC	1 cut(s)	229
HpaII	CCGG	4 cut(s)	144, 407, 438, 918
HphI	GGTGA	3 cut(s)	317, 409, 428
Hpy166II	GTNNAC	4 cut(s)	229, 325, 767, 960
Hpy188I	TCNGA	2 cut(s)	269, 903
Hpy188III	TCNNGA	4 cut(s)	136, 334, 550, 629
Hpy8I	GTNNAC	4 cut(s)	229, 325, 767, 960
HpyAV	CCTTC	2 cut(s)	560, 706
HpyCH4III	ACNGT	1 cut(s)	740
HpyCH4V	TGCA	5 cut(s)	450, 468, 752, 767, 872
HpyF3I	CTNAG	2 cut(s)	761, 902
Hsp92II	CATG	6 cut(s)	65, 200, 605, 652, 773, 892
KspAI	GTTAAC	1 cut(s)	229
Kzo9I	GATC	2 cut(s)	84, 774
LmnI	GCTCC	3 cut(s)	261, 653, 691
Lsp1109I	GCAGC	3 cut(s)	188, 967, 970
LweI	GCATC	3 cut(s)	99, 412, 450
MaeI	CTAG	2 cut(s)	431, 708
MaeIII	GTNAC	2 cut(s)	416, 524
MalI	GATC	2 cut(s)	86, 776
MboI	GATC	2 cut(s)	84, 774
MboII	GAAGA	2 cut(s)	172, 824
MfeI	CAATTG	2 cut(s)	356, 445
MhlI	GDGCHC	4 cut(s)	22, 438, 585, 769
MluCI	AATT	5 cut(s)	339, 356, 445, 520, 711
MlyI	GAGTC	3 cut(s)	191, 285, 955
MmeI	TCCRAC	3 cut(s)	46, 78, 268
MseI	TTAA	7 cut(s)	228, 350, 519, 587, 879, 1095, 1107
MspA1I	CMGCKG	1 cut(s)	980
MspCI	CTTAAG	1 cut(s)	586
MspI	CCGG	4 cut(s)	144, 407, 438, 918
MspR9I	CCNGG	2 cut(s)	414, 438
MunI	CAATTG	2 cut(s)	356, 445
MvaI	CCWGG	1 cut(s)	414
MvnI	CGCG	1 cut(s)	423
NciI	CCSGG	1 cut(s)	438
NcoI	CCATGG	1 cut(s)	888
NdeI	CATATG	1 cut(s)	308
NdeII	GATC	2 cut(s)	84, 774
NlaIII	CATG	6 cut(s)	65, 200, 605, 652, 773, 892
NlaIV	GGNNCC	4 cut(s)	271, 411, 687, 916
NmuCI	GTSAC	2 cut(s)	416, 524
NspI	RCATGY	1 cut(s)	65
NspV	TTCGAA	1 cut(s)	699
PaeR7I	CTCGAG	1 cut(s)	846
PciI	ACATGT	1 cut(s)	61
PfeI	GAWTC	1 cut(s)	1035
PkrI	GCNGC	5 cut(s)	124, 203, 314, 982, 985
PleI	GAGTC	3 cut(s)	190, 285, 955
PpsI	GAGTC	3 cut(s)	190, 285, 955
PpuMI	RGGWCCY	1 cut(s)	659
PscI	ACATGT	1 cut(s)	61
Psp5II	RGGWCCY	1 cut(s)	659
Psp6I	CCWGG	1 cut(s)	412
PspEI	GGTNACC	1 cut(s)	416
PspGI	CCWGG	1 cut(s)	412
PspN4I	GGNNCC	4 cut(s)	271, 411, 687, 916
PspPI	GGNCC	4 cut(s)	269, 626, 659, 946
PspPPI	RGGWCCY	1 cut(s)	659
PspXI	VCTCGAGB	1 cut(s)	846
PstNI	CAGNNNCTG	1 cut(s)	983
PvuII	CAGCTG	1 cut(s)	980
SaqAI	TTAA	7 cut(s)	228, 350, 519, 587, 879, 1095, 1107
SatI	GCNGC	5 cut(s)	123, 202, 313, 981, 984
Sau3AI	GATC	2 cut(s)	84, 774
Sau96I	GGNCC	4 cut(s)	269, 626, 659, 946
SchI	GAGTC	3 cut(s)	191, 285, 955
ScrFI	CCNGG	2 cut(s)	414, 438
SduI	GDGCHC	4 cut(s)	22, 438, 585, 769
SfaNI	GCATC	3 cut(s)	99, 412, 450
SfcI	CTRYAG	1 cut(s)	663
Sfr274I	CTCGAG	1 cut(s)	846
SfuI	TTCGAA	1 cut(s)	699
SinI	GGWCC	3 cut(s)	269, 626, 659
SlaI	CTCGAG	1 cut(s)	846
SmlI	CTYRAG	4 cut(s)	44, 293, 586, 846
SmoI	CTYRAG	4 cut(s)	44, 293, 586, 846
Sse9I	AATT	5 cut(s)	339, 356, 445, 520, 711
SsiI	CCGC	5 cut(s)	120, 123, 312, 421, 722
SspI	AATATT	1 cut(s)	796
SspMI	CTAG	2 cut(s)	431, 708
StyD4I	CCNGG	2 cut(s)	412, 436
StyI	CCWWGG	1 cut(s)	888
TaaI	ACNGT	1 cut(s)	740
TaqI	TCGA	5 cut(s)	289, 343, 699, 847, 864
TasI	AATT	5 cut(s)	339, 356, 445, 520, 711
TauI	GCSGC	2 cut(s)	125, 315
TfiI	GAWTC	1 cut(s)	1035
Tru1I	TTAA	7 cut(s)	228, 350, 519, 587, 879, 1095, 1107
Tru9I	TTAA	7 cut(s)	228, 350, 519, 587, 879, 1095, 1107
TscAI	CASTG	2 cut(s)	322, 1078
TseFI	GTSAC	2 cut(s)	416, 524
TseI	GCWGC	3 cut(s)	201, 980, 983
Tsp45I	GTSAC	2 cut(s)	416, 524
TspDTI	ATGAA	2 cut(s)	515, 590
TspRI	CASTG	2 cut(s)	322, 1078
Vha464I	CTTAAG	1 cut(s)	586
VneI	GTGCAC	1 cut(s)	765
VpaK11BI	GGWCC	3 cut(s)	269, 626, 659
XapI	RAATTY	1 cut(s)	339
XceI	RCATGY	1 cut(s)	65
XhoI	CTCGAG	1 cut(s)	846
XspI	CTAG	2 cut(s)	431, 708

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.