Prupe.1G058200_v2.0.a1

Plant self-incompatibility protein S1

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Reverse (-)
4135174 .. 4135656
483 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G058200.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 483 bp
ATGTGCAATCCTCTTCTTAGCAAACATGTCTTTCTGCTTGTGTTGTGCATTGCTGTTTGGAATCTGCCAATCATCTCTGCAAGAAACCAAGCAACCTTGGCATCAGACCCACCATTAACCACTGTTCATATCAACAACAATCTTCCAATTGCTTTGGAATATTTTACAATTCACTGTAAAACAAATACCGAAGACTTGGGAGTCTATGAAATAGCTTGCAACACTGCCTATGACTGGAGTTTTCGCTTTGGAGGGGTCACGCTTTTGACTTGTGCTATAAATTTTCGACGCTACCCGCAGGGTCGTTTGGAGGACGTGTTTGGAGTCTTTGACATGTATGTTGCTGATAGGGATAAGAGTAGGTGCCCCACAAACTGCATTTGGAATGTGACTGAGGGTGGAGTTTATGGTTATAGAGACTACAATGTCGGAGACAGTGATATCTCTCTTGAGTGGCCTAAACCACCACCGCAGATGAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

161

Amino Acids

18.12

Weight (kDa)

5.24

Isoelectric Point (pI)

35.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 200, 425
AccB1I GGYRCC 1 cut(s) 363
AciI CCGC 2 cut(s) 296, 470
AcsI RAATTY 1 cut(s) 280
AfiI CCNNNNNNNGG 1 cut(s) 234
AflIII ACRYGT 3 cut(s) 25, 315, 333
AjiI CACGTC 1 cut(s) 316
AluBI AGCT 2 cut(s) 215, 480
AluI AGCT 2 cut(s) 215, 480
Alw26I GTCTC 2 cut(s) 411, 426
AoxI GGCC 1 cut(s) 455
ApoI RAATTY 1 cut(s) 280
BaeGI GKGCMC 1 cut(s) 368
BanI GGYRCC 1 cut(s) 363
BbsI GAAGAC 1 cut(s) 198
BcoDI GTCTC 2 cut(s) 411, 426
BmgBI CACGTC 1 cut(s) 316
BmiI GGNNCC 1 cut(s) 365
BmsI GCATC 1 cut(s) 110
BpiI GAAGAC 1 cut(s) 198
BpmI CTGGAG 1 cut(s) 256
BpuEI CTTGAG 1 cut(s) 470
BsaJI CCNNGG 1 cut(s) 96
BsaXI ACNNNNNCTCC 2 cut(s) 302, 332
Bsc4I CCNNNNNNNGG 1 cut(s) 234
Bse1I ACTGG 1 cut(s) 239
Bse3DI GCAATG 1 cut(s) 48
BseDI CCNNGG 1 cut(s) 96
BseLI CCNNNNNNNGG 1 cut(s) 234
BseMI GCAATG 1 cut(s) 48
BseMII CTCAG 1 cut(s) 384
BseNI ACTGG 1 cut(s) 239
BseSI GKGCMC 1 cut(s) 368
BshFI GGCC 1 cut(s) 457
BshNI GGYRCC 1 cut(s) 363
BslI CCNNNNNNNGG 1 cut(s) 234
BsmAI GTCTC 2 cut(s) 411, 426
BsnI GGCC 1 cut(s) 457
Bsp1286I GDGCHC 1 cut(s) 368
BspACI CCGC 2 cut(s) 296, 470
BspANI GGCC 1 cut(s) 457
BspCNI CTCAG 1 cut(s) 385
BspLI GGNNCC 1 cut(s) 365
BspT107I GGYRCC 1 cut(s) 363
BsrDI GCAATG 1 cut(s) 48
BsrI ACTGG 1 cut(s) 239
BssECI CCNNGG 1 cut(s) 96
BssT1I CCWWGG 1 cut(s) 96
Bst4CI ACNGT 3 cut(s) 124, 176, 437
Bst6I CTCTTC 1 cut(s) 18
BstC8I GCNNGC 1 cut(s) 217
BstDEI CTNAG 2 cut(s) 17, 393
BstMAI GTCTC 2 cut(s) 411, 426
BstMWI GCNNNNNNNGC 1 cut(s) 98
BstNSI RCATGY 2 cut(s) 29, 337
BstSLI GKGCMC 1 cut(s) 368
BstV2I GAAGAC 1 cut(s) 198
BsuRI GGCC 1 cut(s) 457
BtrI CACGTC 1 cut(s) 316
BtsI GCAGTG 1 cut(s) 222
BtsIMutI CAGTG 4 cut(s) 120, 172, 222, 442
Cac8I GCNNGC 1 cut(s) 217
CseI GACGC 1 cut(s) 297
CviAII CATG 2 cut(s) 26, 334
CviJI RGCY 3 cut(s) 215, 457, 480
CviKI_1 RGCY 3 cut(s) 215, 457, 480
DdeI CTNAG 2 cut(s) 17, 393
DrdI GACNNNNNNGTC 2 cut(s) 200, 425
DseDI GACNNNNNNGTC 2 cut(s) 200, 425
Eam1104I CTCTTC 1 cut(s) 18
EarI CTCTTC 1 cut(s) 18
Eco130I CCWWGG 1 cut(s) 96
Eco32I GATATC 1 cut(s) 442
EcoRV GATATC 1 cut(s) 442
EcoT14I CCWWGG 1 cut(s) 96
ErhI CCWWGG 1 cut(s) 96
FaeI CATG 2 cut(s) 29, 337
FaiI YATR 9 cut(s) 27, 129, 207, 231, 278, 335, 339, 408, 414
FatI CATG 2 cut(s) 25, 333
FauI CCCGC 1 cut(s) 303
GsuI CTGGAG 1 cut(s) 256
HaeIII GGCC 1 cut(s) 457
HgaI GACGC 1 cut(s) 297
Hin1II CATG 2 cut(s) 29, 337
HinfI GANTC 3 cut(s) 61, 201, 324
Hpy188I TCNGA 2 cut(s) 106, 431
Hpy188III TCNNGA 1 cut(s) 449
Hpy99I CGWCG 1 cut(s) 291
HpyCH4III ACNGT 3 cut(s) 124, 176, 437
HpyCH4IV ACGT 1 cut(s) 315
HpyCH4V TGCA 5 cut(s) 6, 48, 80, 219, 378
HpyF10VI GCNNNNNNNGC 1 cut(s) 98
HpyF3I CTNAG 2 cut(s) 17, 393
HpySE526I ACGT 1 cut(s) 315
Hsp92II CATG 2 cut(s) 29, 337
LpnPI CCDG 2 cut(s) 220, 284
LweI GCATC 1 cut(s) 110
MaeII ACGT 1 cut(s) 315
MaeIII GTNAC 2 cut(s) 256, 388
MboII GAAGA 3 cut(s) 5, 134, 203
MfeI CAATTG 1 cut(s) 147
MhlI GDGCHC 1 cut(s) 368
MluCI AATT 3 cut(s) 147, 168, 280
MlyI GAGTC 2 cut(s) 210, 333
MmeI TCCRAC 1 cut(s) 409
MnlI CCTC 4 cut(s) 21, 245, 304, 388
MseI TTAA 1 cut(s) 116
MunI CAATTG 1 cut(s) 147
MwoI GCNNNNNNNGC 1 cut(s) 98
NlaIII CATG 2 cut(s) 29, 337
NlaIV GGNNCC 1 cut(s) 365
NmuCI GTSAC 2 cut(s) 256, 388
NspI RCATGY 2 cut(s) 29, 337
PciI ACATGT 2 cut(s) 25, 333
PfeI GAWTC 1 cut(s) 61
PleI GAGTC 2 cut(s) 209, 332
PpsI GAGTC 2 cut(s) 209, 332
PscI ACATGT 2 cut(s) 25, 333
PspN4I GGNNCC 1 cut(s) 365
SaqAI TTAA 1 cut(s) 116
SchI GAGTC 2 cut(s) 210, 333
SduI GDGCHC 1 cut(s) 368
SetI ASST 5 cut(s) 98, 217, 318, 365, 482
SfaNI GCATC 1 cut(s) 110
SmlI CTYRAG 1 cut(s) 449
SmoI CTYRAG 1 cut(s) 449
Sse9I AATT 3 cut(s) 147, 168, 280
SsiI CCGC 2 cut(s) 296, 470
SspI AATATT 1 cut(s) 161
StyI CCWWGG 1 cut(s) 96
TaaI ACNGT 3 cut(s) 124, 176, 437
TaiI ACGT 1 cut(s) 318
TaqI TCGA 1 cut(s) 286
TasI AATT 3 cut(s) 147, 168, 280
TfiI GAWTC 1 cut(s) 61
Tru1I TTAA 1 cut(s) 116
Tru9I TTAA 1 cut(s) 116
TscAI CASTG 4 cut(s) 127, 179, 229, 442
TseFI GTSAC 2 cut(s) 256, 388
Tsp45I GTSAC 2 cut(s) 256, 388
TspDTI ATGAA 2 cut(s) 116, 222
TspRI CASTG 4 cut(s) 127, 179, 229, 442
XapI RAATTY 1 cut(s) 280
XceI RCATGY 2 cut(s) 29, 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.