Prupe.1G061600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0028962
Physical Location & Seq
Reverse (-)
4366417 .. 4366922
506 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G061600.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 363 bp
ATGAGGAAAGGAGCTTTTACCTTTTCTATACCTTCCACAGATGAACTCTTTTGCTTCAATGTAGCAGATACAGTTAACTGTGTAGCACCACCACCAGGACCAAGTTTCGGATTCTTGAGGATATCCTTACTAGGACCTCTCAAGAGTATAGTACATGCTTTAGGCTCTTTGCAATCAACAATGAATGCAAAAAACTCATCACCAATTTTCTTAACCTCAAATATCCCAGCGCGTGTACCAACATCAGACTGTTGCAATTCATCTGGTCTGTTAACAATTACAGCCCCACAAGCCTTGGCAATTCGGTTATTATCTGTTTTCCGCAACCTCCTCATTCCACTGACGCCGGCCTTGCTAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

12.71

Weight (kDa)

9.5

Isoelectric Point (pI)

38.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0028962)

Species Orthologous Gene IDs
prunus_persica Prupe.1G061600_v2.0.a1 Prupe.2G115900_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 232
AciI CCGC 1 cut(s) 322
AcyI GRCGYC 1 cut(s) 344
AfaI GTAC 2 cut(s) 153, 237
AfiI CCNNNNNNNGG 2 cut(s) 95, 107
AgsI TTSAA 1 cut(s) 58
AjnI CCWGG 1 cut(s) 94
AluBI AGCT 1 cut(s) 14
AluI AGCT 1 cut(s) 14
AoxI GGCC 1 cut(s) 348
AspLEI GCGC 1 cut(s) 232
AspS9I GGNCC 2 cut(s) 98, 134
AsuHPI GGTGA 1 cut(s) 192
AvaII GGWCC 2 cut(s) 98, 134
BciT130I CCWGG 1 cut(s) 96
BfaI CTAG 1 cut(s) 131
Bme1390I CCNGG 1 cut(s) 96
Bme18I GGWCC 2 cut(s) 98, 134
BmgT120I GGNCC 2 cut(s) 98, 134
BmrFI CCNGG 1 cut(s) 96
BpuEI CTTGAG 2 cut(s) 125, 136
BsaHI GRCGYC 1 cut(s) 344
BsaJI CCNNGG 1 cut(s) 294
Bsc4I CCNNNNNNNGG 2 cut(s) 95, 107
Bse118I RCCGGY 1 cut(s) 346
BseBI CCWGG 1 cut(s) 96
BseDI CCNNGG 1 cut(s) 294
BseLI CCNNNNNNNGG 2 cut(s) 95, 107
BseRI GAGGAG 1 cut(s) 320
BseYI CCCAGC 1 cut(s) 226
Bsh1236I CGCG 1 cut(s) 232
BshFI GGCC 1 cut(s) 350
BsiSI CCGG 1 cut(s) 347
BslI CCNNNNNNNGG 2 cut(s) 95, 107
BsmI GAATGC 1 cut(s) 190
BsnI GGCC 1 cut(s) 350
BspACI CCGC 1 cut(s) 322
BspANI GGCC 1 cut(s) 350
BspFNI CGCG 1 cut(s) 232
BsrFI RCCGGY 1 cut(s) 346
BssAI RCCGGY 1 cut(s) 346
BssECI CCNNGG 1 cut(s) 294
BssNI GRCGYC 1 cut(s) 344
BssT1I CCWWGG 1 cut(s) 294
Bst2UI CCWGG 1 cut(s) 96
Bst4CI ACNGT 3 cut(s) 73, 80, 251
BstACI GRCGYC 1 cut(s) 344
BstC8I GCNNGC 1 cut(s) 348
BstFNI CGCG 1 cut(s) 232
BstHHI GCGC 1 cut(s) 232
BstMWI GCNNNNNNNGC 2 cut(s) 290, 352
BstNI CCWGG 1 cut(s) 96
BstNSI RCATGY 1 cut(s) 158
BstSCI CCNGG 1 cut(s) 94
BstUI CGCG 1 cut(s) 232
BsuRI GGCC 1 cut(s) 350
BtsIMutI CAGTG 1 cut(s) 338
Cac8I GCNNGC 1 cut(s) 348
CfoI GCGC 1 cut(s) 232
Cfr10I RCCGGY 1 cut(s) 346
Cfr13I GGNCC 2 cut(s) 98, 134
CseI GACGC 1 cut(s) 352
Csp6I GTAC 2 cut(s) 152, 236
CspCI CAANNNNNGTGG 2 cut(s) 276, 311
CviAII CATG 1 cut(s) 155
CviJI RGCY 5 cut(s) 14, 165, 284, 293, 350
CviKI_1 RGCY 5 cut(s) 14, 165, 284, 293, 350
CviQI GTAC 2 cut(s) 152, 236
Eco130I CCWWGG 1 cut(s) 294
Eco32I GATATC 1 cut(s) 123
Eco47I GGWCC 2 cut(s) 98, 134
EcoO109I RGGNCCY 1 cut(s) 134
EcoRII CCWGG 1 cut(s) 94
EcoRV GATATC 1 cut(s) 123
EcoT14I CCWWGG 1 cut(s) 294
ErhI CCWWGG 1 cut(s) 294
FaeI CATG 1 cut(s) 158
FaiI YATR 3 cut(s) 29, 149, 156
FatI CATG 1 cut(s) 154
FspBI CTAG 1 cut(s) 131
GlaI GCGC 1 cut(s) 231
GsaI CCCAGC 1 cut(s) 230
HaeIII GGCC 1 cut(s) 350
HapII CCGG 1 cut(s) 347
HgaI GACGC 1 cut(s) 352
HhaI GCGC 1 cut(s) 232
Hin1I GRCGYC 1 cut(s) 344
Hin1II CATG 1 cut(s) 158
Hin6I GCGC 1 cut(s) 230
HinP1I GCGC 1 cut(s) 230
HincII GTYRAC 2 cut(s) 76, 273
HindII GTYRAC 2 cut(s) 76, 273
HinfI GANTC 1 cut(s) 111
HpaI GTTAAC 2 cut(s) 76, 273
HpaII CCGG 1 cut(s) 347
HphI GGTGA 1 cut(s) 192
Hpy166II GTNNAC 3 cut(s) 76, 236, 273
Hpy188I TCNGA 2 cut(s) 110, 247
Hpy188III TCNNGA 2 cut(s) 115, 142
Hpy8I GTNNAC 3 cut(s) 76, 236, 273
HpyAV CCTTC 1 cut(s) 42
HpyCH4III ACNGT 3 cut(s) 73, 80, 251
HpyCH4V TGCA 3 cut(s) 172, 188, 255
HpyF10VI GCNNNNNNNGC 2 cut(s) 290, 352
Hsp92I GRCGYC 1 cut(s) 344
Hsp92II CATG 1 cut(s) 158
HspAI GCGC 1 cut(s) 230
KroI GCCGGC 1 cut(s) 346
KroNI GCCGGC 1 cut(s) 348
KspAI GTTAAC 2 cut(s) 76, 273
LmnI GCTCC 1 cut(s) 11
LpnPI CCDG 4 cut(s) 81, 108, 240, 249
MaeI CTAG 1 cut(s) 131
MluCI AATT 4 cut(s) 204, 256, 276, 300
MnlI CCTC 5 cut(s) 111, 147, 226, 338, 341
MroNI GCCGGC 1 cut(s) 346
MseI TTAA 3 cut(s) 75, 212, 272
MspI CCGG 1 cut(s) 347
MspR9I CCNGG 1 cut(s) 96
Mva1269I GAATGC 1 cut(s) 190
MvaI CCWGG 1 cut(s) 96
MvnI CGCG 1 cut(s) 232
MwoI GCNNNNNNNGC 2 cut(s) 290, 352
NaeI GCCGGC 1 cut(s) 348
NgoMIV GCCGGC 1 cut(s) 346
NlaIII CATG 1 cut(s) 158
NspI RCATGY 1 cut(s) 158
PctI GAATGC 1 cut(s) 190
PdiI GCCGGC 1 cut(s) 348
PfeI GAWTC 1 cut(s) 111
PpuMI RGGWCCY 1 cut(s) 134
Psp5II RGGWCCY 1 cut(s) 134
Psp6I CCWGG 1 cut(s) 94
PspFI CCCAGC 1 cut(s) 226
PspGI CCWGG 1 cut(s) 94
PspPI GGNCC 2 cut(s) 98, 134
PspPPI RGGWCCY 1 cut(s) 134
RsaI GTAC 2 cut(s) 153, 237
RsaNI GTAC 2 cut(s) 152, 236
SaqAI TTAA 3 cut(s) 75, 212, 272
Sau96I GGNCC 2 cut(s) 98, 134
ScrFI CCNGG 1 cut(s) 96
SetI ASST 6 cut(s) 16, 23, 34, 139, 218, 330
SinI GGWCC 2 cut(s) 98, 134
SmlI CTYRAG 2 cut(s) 115, 140
SmoI CTYRAG 2 cut(s) 115, 140
Sse9I AATT 4 cut(s) 204, 256, 276, 300
SsiI CCGC 1 cut(s) 322
SspMI CTAG 1 cut(s) 131
StyD4I CCNGG 1 cut(s) 94
StyI CCWWGG 1 cut(s) 294
TaaI ACNGT 3 cut(s) 73, 80, 251
TasI AATT 4 cut(s) 204, 256, 276, 300
TatI WGTACW 1 cut(s) 151
TfiI GAWTC 1 cut(s) 111
Tru1I TTAA 3 cut(s) 75, 212, 272
Tru9I TTAA 3 cut(s) 75, 212, 272
TscAI CASTG 1 cut(s) 345
TspDTI ATGAA 3 cut(s) 57, 197, 249
TspRI CASTG 1 cut(s) 345
VpaK11BI GGWCC 2 cut(s) 98, 134
XceI RCATGY 1 cut(s) 158
XspI CTAG 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.