Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

4821005 .. 4824294

Gene Structure 3290 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G067600.1_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGACAGTTTTGGGATGCCATGGCTGGACTTATTTGAAATATGCAATTCTTTTCCAGTCTGTTATTTATAGTTTTCAGGAAGCTGAGAAGCATCTGTCAGATATGGTTGTGTCCAAGGCACTGGTGGCCAAGATTGATCGGCCAATAGGAATAGTCTGTTTTCAAACTGCAAAGGATAGCAACAATGTTCTTAATTCGTGGGCTACCAACTTGGAGAAATTGCTTGATCTTGTTGAGAAGAGCTGCCACCAAATACACAAAGAAATTGCTTGGTCTGTTGTTTGCACAGGGTGTTTTTCAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005838 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008541 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0022624 GO:0030163 GO:0031595 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048856 GO:0051603 GO:0070013 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PCI

Protein Analysis

102

Amino Acids

11.38

Weight (kDa)

6.88

Isoelectric Point (pI)

32.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	2 cut(s)	126, 140
AdeI	CACNNNGTG	1 cut(s)	291
AgsI	TTSAA	3 cut(s)	37, 164, 300
AluBI	AGCT	2 cut(s)	83, 243
AluI	AGCT	2 cut(s)	83, 243
AoxI	GGCC	2 cut(s)	126, 140
ApeKI	GCWGC	1 cut(s)	243
BalI	TGGCCA	1 cut(s)	128
BbvI	GCAGC	1 cut(s)	230
BisI	GCNGC	1 cut(s)	244
BlsI	GCNGC	1 cut(s)	245
BmsI	GCATC	2 cut(s)	5, 100
BsaJI	CCNNGG	2 cut(s)	19, 114
Bse1I	ACTGG	2 cut(s)	55, 126
BseDI	CCNNGG	2 cut(s)	19, 114
BseGI	GGATG	1 cut(s)	20
BseMII	CTCAG	1 cut(s)	75
BseNI	ACTGG	2 cut(s)	55, 126
BseXI	GCAGC	1 cut(s)	230
BshFI	GGCC	2 cut(s)	128, 142
BsnI	GGCC	2 cut(s)	128, 142
Bsp143I	GATC	2 cut(s)	136, 226
Bsp19I	CCATGG	1 cut(s)	19
BspANI	GGCC	2 cut(s)	128, 142
BspCNI	CTCAG	1 cut(s)	76
BspQI	GCTCTTC	1 cut(s)	233
BsrI	ACTGG	2 cut(s)	55, 126
BssECI	CCNNGG	2 cut(s)	19, 114
BssMI	GATC	2 cut(s)	136, 226
BssT1I	CCWWGG	2 cut(s)	19, 114
Bst4CI	ACNGT	1 cut(s)	7
Bst6I	CTCTTC	1 cut(s)	233
BstDEI	CTNAG	1 cut(s)	84
BstDSI	CCRYGG	1 cut(s)	19
BstF5I	GGATG	1 cut(s)	20
BstKTI	GATC	2 cut(s)	139, 229
BstMBI	GATC	2 cut(s)	136, 226
BstMWI	GCNNNNNNNGC	1 cut(s)	125
BstV1I	GCAGC	1 cut(s)	230
BstXI	CCANNNNNNTGG	1 cut(s)	121
BsuRI	GGCC	2 cut(s)	128, 142
BtgI	CCRYGG	1 cut(s)	19
BtsCI	GGATG	1 cut(s)	20
BtsIMutI	CAGTG	1 cut(s)	119
CviAII	CATG	1 cut(s)	20
CviJI	RGCY	6 cut(s)	24, 83, 128, 142, 203, 243
CviKI_1	RGCY	6 cut(s)	24, 83, 128, 142, 203, 243
DdeI	CTNAG	1 cut(s)	84
DpnI	GATC	2 cut(s)	138, 228
DpnII	GATC	2 cut(s)	136, 226
DraIII	CACNNNGTG	1 cut(s)	291
EaeI	YGGCCR	2 cut(s)	126, 140
Eam1104I	CTCTTC	1 cut(s)	233
EarI	CTCTTC	1 cut(s)	233
Eco130I	CCWWGG	2 cut(s)	19, 114
EcoT14I	CCWWGG	2 cut(s)	19, 114
ErhI	CCWWGG	2 cut(s)	19, 114
FaeI	CATG	1 cut(s)	23
FaiI	YATR	4 cut(s)	21, 42, 69, 104
FatI	CATG	1 cut(s)	19
Fnu4HI	GCNGC	1 cut(s)	244
FokI	GGATG	1 cut(s)	27
Fsp4HI	GCNGC	1 cut(s)	244
GluI	GCNGC	1 cut(s)	244
HaeIII	GGCC	2 cut(s)	128, 142
Hin1II	CATG	1 cut(s)	23
Hpy188I	TCNGA	1 cut(s)	100
Hpy188III	TCNNGA	1 cut(s)	77
HpyCH4III	ACNGT	1 cut(s)	7
HpyCH4V	TGCA	3 cut(s)	44, 170, 285
HpyF10VI	GCNNNNNNNGC	1 cut(s)	125
HpyF3I	CTNAG	1 cut(s)	84
Hsp92II	CATG	1 cut(s)	23
Kzo9I	GATC	2 cut(s)	136, 226
LguI	GCTCTTC	1 cut(s)	233
LpnPI	CCDG	5 cut(s)	10, 62, 68, 107, 273
Lsp1109I	GCAGC	1 cut(s)	230
LweI	GCATC	2 cut(s)	5, 100
MalI	GATC	2 cut(s)	138, 228
MboI	GATC	2 cut(s)	136, 226
MboII	GAAGA	1 cut(s)	250
MlsI	TGGCCA	1 cut(s)	128
MluCI	AATT	5 cut(s)	45, 193, 218, 264, 301
MluNI	TGGCCA	1 cut(s)	128
Mox20I	TGGCCA	1 cut(s)	128
MscI	TGGCCA	1 cut(s)	128
MseI	TTAA	1 cut(s)	192
Msp20I	TGGCCA	1 cut(s)	128
MwoI	GCNNNNNNNGC	1 cut(s)	125
NcoI	CCATGG	1 cut(s)	19
NdeII	GATC	2 cut(s)	136, 226
NlaIII	CATG	1 cut(s)	23
PciSI	GCTCTTC	1 cut(s)	233
PkrI	GCNGC	1 cut(s)	245
SapI	GCTCTTC	1 cut(s)	233
SaqAI	TTAA	1 cut(s)	192
SatI	GCNGC	1 cut(s)	244
Sau3AI	GATC	2 cut(s)	136, 226
SetI	ASST	2 cut(s)	85, 245
SfaNI	GCATC	2 cut(s)	5, 100
Sse9I	AATT	5 cut(s)	45, 193, 218, 264, 301
StyI	CCWWGG	2 cut(s)	19, 114
TaaI	ACNGT	1 cut(s)	7
TasI	AATT	5 cut(s)	45, 193, 218, 264, 301
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TscAI	CASTG	1 cut(s)	126
TseI	GCWGC	1 cut(s)	243
TspRI	CASTG	1 cut(s)	126
XcmI	CCANNNNNNNNNTGG	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.