Prupe.1G078800_v2.0.a1

Zinc finger MYM-type protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Reverse (-)
5707717 .. 5709321
1605 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G078800.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 282 bp
ATGTTGGAGGGGCGTGGACAAACGTTTGAAGAGGTCAAAATCTTGGTGACGAGGCAAAAAAGAAAAGAAAAAGGAAAGCCATTACACATAGCTCCTCAACTGAACAATGCATGCAGTCGTCCCATGGTGCGTTCCATATCAGAAATAATGGCACTATTACATCATCCGAAGGAAAATACTCCCCCACGCCGTGATCCAGTGGAACCGCTTCCGCCAATGATCGAGTCGTCCTTGTACTTAATTGTGTTAGACTATGAAGACCAGGAGTATTTCAATTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

94

Amino Acids

10.82

Weight (kDa)

6.83

Isoelectric Point (pI)

68.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 206, 212
AclI AACGTT 1 cut(s) 23
AclWI GGATC 1 cut(s) 188
AdeI CACNNNGTG 1 cut(s) 191
AfaI GTAC 1 cut(s) 236
AgsI TTSAA 2 cut(s) 29, 274
AjnI CCWGG 1 cut(s) 261
AluBI AGCT 1 cut(s) 92
AluI AGCT 1 cut(s) 92
AlwI GGATC 1 cut(s) 188
Asp700I GAANNNNTTC 1 cut(s) 207
AsuHPI GGTGA 1 cut(s) 58
BbsI GAAGAC 1 cut(s) 264
BceAI ACGGC 1 cut(s) 174
BciT130I CCWGG 1 cut(s) 263
Bme1390I CCNGG 1 cut(s) 263
BmiI GGNNCC 1 cut(s) 204
BmrFI CCNGG 1 cut(s) 263
BpiI GAAGAC 1 cut(s) 264
BsaJI CCNNGG 1 cut(s) 123
Bse1I ACTGG 1 cut(s) 197
BseBI CCWGG 1 cut(s) 263
BseDI CCNNGG 1 cut(s) 123
BseGI GGATG 1 cut(s) 163
BseNI ACTGG 1 cut(s) 197
BseRI GAGGAG 1 cut(s) 84
BslFI GGGAC 1 cut(s) 105
BsmFI GGGAC 1 cut(s) 105
Bsp143I GATC 2 cut(s) 193, 219
Bsp19I CCATGG 1 cut(s) 123
BspACI CCGC 2 cut(s) 206, 212
BspLI GGNNCC 1 cut(s) 204
BspPI GGATC 1 cut(s) 188
BsrI ACTGG 1 cut(s) 197
BssECI CCNNGG 1 cut(s) 123
BssMI GATC 2 cut(s) 193, 219
BssT1I CCWWGG 1 cut(s) 123
Bst2UI CCWGG 1 cut(s) 263
Bst6I CTCTTC 1 cut(s) 24
BstC8I GCNNGC 1 cut(s) 112
BstDSI CCRYGG 1 cut(s) 123
BstF5I GGATG 1 cut(s) 163
BstKTI GATC 2 cut(s) 196, 222
BstMBI GATC 2 cut(s) 193, 219
BstNI CCWGG 1 cut(s) 263
BstNSI RCATGY 1 cut(s) 114
BstSCI CCNGG 1 cut(s) 261
BstV2I GAAGAC 1 cut(s) 264
BtgI CCRYGG 1 cut(s) 123
BtsCI GGATG 1 cut(s) 163
BtsIMutI CAGTG 1 cut(s) 204
Cac8I GCNNGC 1 cut(s) 112
Csp6I GTAC 1 cut(s) 235
CviAII CATG 2 cut(s) 111, 124
CviJI RGCY 2 cut(s) 79, 92
CviKI_1 RGCY 2 cut(s) 79, 92
CviQI GTAC 1 cut(s) 235
DpnI GATC 2 cut(s) 195, 221
DpnII GATC 2 cut(s) 193, 219
DraIII CACNNNGTG 1 cut(s) 191
Eam1104I CTCTTC 1 cut(s) 24
EarI CTCTTC 1 cut(s) 24
EciI GGCGGA 1 cut(s) 201
Eco130I CCWWGG 1 cut(s) 123
EcoRII CCWGG 1 cut(s) 261
EcoT14I CCWWGG 1 cut(s) 123
EcoT22I ATGCAT 1 cut(s) 112
ErhI CCWWGG 1 cut(s) 123
FaeI CATG 2 cut(s) 114, 127
FaiI YATR 6 cut(s) 89, 112, 125, 137, 255, 280
FaqI GGGAC 1 cut(s) 105
FatI CATG 2 cut(s) 110, 123
FokI GGATG 1 cut(s) 150
Hin1II CATG 2 cut(s) 114, 127
HinfI GANTC 1 cut(s) 224
HphI GGTGA 1 cut(s) 58
Hpy166II GTNNAC 1 cut(s) 17
Hpy188I TCNGA 2 cut(s) 142, 168
Hpy8I GTNNAC 1 cut(s) 17
HpyAV CCTTC 1 cut(s) 163
HpyCH4IV ACGT 1 cut(s) 23
HpyCH4V TGCA 2 cut(s) 110, 114
HpySE526I ACGT 1 cut(s) 23
Hsp92II CATG 2 cut(s) 114, 127
Kzo9I GATC 2 cut(s) 193, 219
LmnI GCTCC 1 cut(s) 97
LpnPI CCDG 3 cut(s) 210, 248, 275
MaeII ACGT 1 cut(s) 23
MaeIII GTNAC 1 cut(s) 46
MalI GATC 2 cut(s) 195, 221
MboI GATC 2 cut(s) 193, 219
MboII GAAGA 2 cut(s) 41, 269
MluCI AATT 2 cut(s) 240, 274
MlyI GAGTC 1 cut(s) 233
MnlI CCTC 3 cut(s) 25, 45, 105
Mph1103I ATGCAT 1 cut(s) 112
MroXI GAANNNNTTC 1 cut(s) 207
MseI TTAA 1 cut(s) 239
MspR9I CCNGG 1 cut(s) 263
MvaI CCWGG 1 cut(s) 263
NcoI CCATGG 1 cut(s) 123
NdeII GATC 2 cut(s) 193, 219
NlaIII CATG 2 cut(s) 114, 127
NlaIV GGNNCC 1 cut(s) 204
NmuCI GTSAC 1 cut(s) 46
NsiI ATGCAT 1 cut(s) 112
NspI RCATGY 1 cut(s) 114
PaeI GCATGC 1 cut(s) 114
PdmI GAANNNNTTC 1 cut(s) 207
PleI GAGTC 1 cut(s) 232
PpsI GAGTC 1 cut(s) 232
Psp1406I AACGTT 1 cut(s) 23
Psp6I CCWGG 1 cut(s) 261
PspGI CCWGG 1 cut(s) 261
PspN4I GGNNCC 1 cut(s) 204
RsaI GTAC 1 cut(s) 236
RsaNI GTAC 1 cut(s) 235
SaqAI TTAA 1 cut(s) 239
Sau3AI GATC 2 cut(s) 193, 219
SchI GAGTC 1 cut(s) 233
ScrFI CCNGG 1 cut(s) 263
SetI ASST 3 cut(s) 26, 36, 94
SphI GCATGC 1 cut(s) 114
Sse9I AATT 2 cut(s) 240, 274
SsiI CCGC 2 cut(s) 206, 212
StyD4I CCNGG 1 cut(s) 261
StyI CCWWGG 1 cut(s) 123
TaiI ACGT 1 cut(s) 26
TaqI TCGA 1 cut(s) 222
TasI AATT 2 cut(s) 240, 274
TatI WGTACW 1 cut(s) 234
Tru1I TTAA 1 cut(s) 239
Tru9I TTAA 1 cut(s) 239
TscAI CASTG 1 cut(s) 204
TseFI GTSAC 1 cut(s) 46
Tsp45I GTSAC 1 cut(s) 46
TspDTI ATGAA 1 cut(s) 270
TspRI CASTG 1 cut(s) 204
XceI RCATGY 1 cut(s) 114
XmnI GAANNNNTTC 1 cut(s) 207
Zsp2I ATGCAT 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.