Prupe.1G080100_v2.0.a1

Spermidine hydroxycinnamoyl

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Forward (+)
5858547 .. 5862210
3664 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G080100.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 1272 bp
ATGGTGGTGAAAATCAAAGGCTGCTATGTTCTGAAACCCTCTACACCAACATTGCAAGGTAGCCTAGCTCTCTCAGAATCGGATCAAATTGACACCATAAGTCATGTTAGCATTATCAACTTCTACAGACCAGACCAAAACTTTGTCTCACAACCTGACGCCATTGTCAACACTCTCAAAGACTCATTATGCCGCGCATTGGTGCCATTCCATCCACTAGCCGGTCGTTTGCGTTGGATTGGCGGAGGCCATCTCGAGCTCGATTGCAATGGCATGGGGGTTCAGTTCATTGAAGCTGAGTCCGATTCGAAACTTGATGATCTTGAATATGACTATCTTATCCCCACTGTAGACTACACCCTCCCAATTCATGAACTTCCTATATTGCTTACTATTTCACATGCTGTTGTTGATGGGCAAAGTACATTTCATTTCATTTCTGAGTGGGCTAGGCTTGCAAAGGGTGAGCCAATTGGTGTAATGCCGTTCCTGGATCGAAAGGCCTTTCAAGCTCGAACACTCCCAGCTGGAAATACTCTAGGGCTTGACCACTCAGAGAAGAAGAAGACCACTGTGGCCATGTTGAAGCTAACCAAGCAACAAATTGAGAAACTTAAGCGAATGGCAAACGAGGGGAATGATTACAAGAATTCTGGCACTAAGCCGGCTTACACACGGTATAAGACCGTGGCAGGGCACATATGGAGATGTGCGTCTAAGGCTAGAGTTCACAGAAATGAACAACCTACGGCAATGGGAGTTTGCGTTGATTTGAGGAGTCGTATGCAACCCCCATTGCCCCAAGGATACTTTGGAAATGCAACATTTTATGGGGTTGCTAGAAGTCTTGCTGGTGACTTGGTGTCCAAACCATTAGGGTACGCATCGAGTAGAATAACGGAGGCAATCGAGAAGGTGTCGAATTATTACGTGCTGTCCGCCATTGATCACTTCAGGAACCAACCGAACTTGACTAGGTTTCAAGCCCTTCATGCTCTAGGGATTGCCGAAGGGGATTTGTATGGAAACCCTAATCTTGAGGTTGTGACTTGGTCGACACCGCCTATGTATGGGCTTGACTTTGGATGGGAAAAGGAAATGTATATGGGTTCAGGAACATATGATTTTGATGGGGAATCCTTCCTCCTTCCAAGTCCTGAAGGAGATGGTTCTATGGTTCTGACTTTGTGTTTACAAGTGGCCCATATGGACGCTTTCAAAAAGCACTTCTATGAAGATATTATACTGCATAAGTTATATAGCAAGCTATAA

Protein Analysis

424

Amino Acids

47.24

Weight (kDa)

6.54

Isoelectric Point (pI)

37.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 164
AccB1I GGYRCC 1 cut(s) 202
AccI GTMKAC 2 cut(s) 351, 1055
AccII CGCG 1 cut(s) 195
AciI CCGC 4 cut(s) 193, 243, 939, 1061
AclWI GGATC 2 cut(s) 90, 501
AcoI YGGCCR 1 cut(s) 576
AcsI RAATTY 1 cut(s) 649
AcuI CTGAAG 2 cut(s) 937, 1179
AcyI GRCGYC 1 cut(s) 159
AfaI GTAC 2 cut(s) 424, 881
AfiI CCNNNNNNNGG 4 cut(s) 199, 221, 693, 1070
AflII CTTAAG 1 cut(s) 614
AgsI TTSAA 6 cut(s) 293, 326, 509, 586, 983, 1219
AhdI GACNNNNNGTC 1 cut(s) 862
AjnI CCWGG 1 cut(s) 489
AluBI AGCT 7 cut(s) 68, 259, 296, 512, 527, 589, 1267
AluI AGCT 7 cut(s) 68, 259, 296, 512, 527, 589, 1267
Alw21I GWGCWC 1 cut(s) 261
Alw26I GTCTC 1 cut(s) 151
AlwI GGATC 2 cut(s) 90, 501
Ama87I CYCGRG 1 cut(s) 254
AoxI GGCC 4 cut(s) 247, 501, 576, 1200
ApeKI GCWGC 1 cut(s) 21
ApoI RAATTY 1 cut(s) 649
ArsI GACNNNNNNTTYG 2 cut(s) 125, 157
AspLEI GCGC 1 cut(s) 197
AspS9I GGNCC 1 cut(s) 1201
AsuHPI GGTGA 3 cut(s) 19, 476, 866
AsuII TTCGAA 1 cut(s) 308
AvaI CYCGRG 1 cut(s) 254
BaeGI GKGCMC 1 cut(s) 699
BalI TGGCCA 1 cut(s) 578
BanI GGYRCC 1 cut(s) 202
BanII GRGCYC 1 cut(s) 261
BarI GAAGNNNNNNTAC 2 cut(s) 1227, 1259
BbsI GAAGAC 1 cut(s) 572
Bbv12I GWGCWC 1 cut(s) 261
BbvI GCAGC 1 cut(s) 8
BccI CCATC 6 cut(s) 219, 258, 407, 1080, 1124, 1160
BceAI ACGGC 2 cut(s) 469, 765
BciT130I CCWGG 1 cut(s) 491
BciVI GTATCC 1 cut(s) 800
BclI TGATCA 1 cut(s) 946
BcoDI GTCTC 1 cut(s) 151
BfaI CTAG 8 cut(s) 65, 218, 450, 539, 723, 840, 975, 998
BfmI CTRYAG 2 cut(s) 124, 348
BfrI CTTAAG 1 cut(s) 614
BfuI GTATCC 1 cut(s) 800
BisI GCNGC 2 cut(s) 22, 193
BlsI GCNGC 2 cut(s) 23, 194
Bme1390I CCNGG 1 cut(s) 491
BmeRI GACNNNNNGTC 1 cut(s) 862
BmeT110I CYCGRG 1 cut(s) 254
BmgT120I GGNCC 1 cut(s) 1201
BmiI GGNNCC 2 cut(s) 204, 959
BmrFI CCNGG 1 cut(s) 491
BmsI GCATC 1 cut(s) 893
BpiI GAAGAC 1 cut(s) 572
BplI GAGNNNNNCTC 2 cut(s) 237, 269
Bpu14I TTCGAA 1 cut(s) 308
BpuEI CTTGAG 1 cut(s) 1058
BsaAI YACGTR 1 cut(s) 931
BsaHI GRCGYC 1 cut(s) 159
BsaJI CCNNGG 2 cut(s) 687, 802
BsaXI ACNNNNNCTCC 2 cut(s) 750, 780
Bsc4I CCNNNNNNNGG 4 cut(s) 199, 221, 693, 1070
Bse118I RCCGGY 2 cut(s) 221, 664
Bse3DI GCAATG 4 cut(s) 50, 274, 759, 794
BseBI CCWGG 1 cut(s) 491
BseDI CCNNGG 2 cut(s) 687, 802
BseGI GGATG 2 cut(s) 211, 1091
BseLI CCNNNNNNNGG 4 cut(s) 199, 221, 693, 1070
BseMI GCAATG 4 cut(s) 50, 274, 759, 794
BseMII CTCAG 4 cut(s) 87, 288, 432, 567
BseRI GAGGAG 1 cut(s) 790
BseSI GKGCMC 1 cut(s) 699
BseXI GCAGC 1 cut(s) 8
BseYI CCCAGC 1 cut(s) 523
Bsh1236I CGCG 1 cut(s) 195
Bsh1285I CGRYCG 1 cut(s) 226
BshFI GGCC 4 cut(s) 249, 503, 578, 1202
BshNI GGYRCC 1 cut(s) 202
BsiEI CGRYCG 1 cut(s) 226
BsiHKAI GWGCWC 1 cut(s) 261
BsiHKCI CYCGRG 1 cut(s) 254
BsiSI CCGG 2 cut(s) 222, 665
BslI CCNNNNNNNGG 4 cut(s) 199, 221, 693, 1070
BsmAI GTCTC 1 cut(s) 151
BsnI GGCC 4 cut(s) 249, 503, 578, 1202
BsoBI CYCGRG 1 cut(s) 254
Bsp119I TTCGAA 1 cut(s) 308
Bsp1286I GDGCHC 2 cut(s) 261, 699
Bsp143I GATC 4 cut(s) 82, 319, 493, 946
BspACI CCGC 4 cut(s) 193, 243, 939, 1061
BspANI GGCC 4 cut(s) 249, 503, 578, 1202
BspCNI CTCAG 4 cut(s) 86, 289, 433, 566
BspFNI CGCG 1 cut(s) 195
BspHI TCATGA 1 cut(s) 370
BspLI GGNNCC 2 cut(s) 204, 959
BspPI GGATC 2 cut(s) 90, 501
BspT104I TTCGAA 1 cut(s) 308
BspT107I GGYRCC 1 cut(s) 202
BspTI CTTAAG 1 cut(s) 614
BsrDI GCAATG 4 cut(s) 50, 274, 759, 794
BsrFI RCCGGY 2 cut(s) 221, 664
BssAI RCCGGY 2 cut(s) 221, 664
BssECI CCNNGG 2 cut(s) 687, 802
BssMI GATC 4 cut(s) 82, 319, 493, 946
BssNI GRCGYC 1 cut(s) 159
BssT1I CCWWGG 1 cut(s) 802
Bst2UI CCWGG 1 cut(s) 491
Bst4CI ACNGT 4 cut(s) 349, 574, 678, 688
BstACI GRCGYC 1 cut(s) 159
BstAFI CTTAAG 1 cut(s) 614
BstBAI YACGTR 1 cut(s) 931
BstBI TTCGAA 1 cut(s) 308
BstC8I GCNNGC 3 cut(s) 456, 666, 1265
BstDEI CTNAG 6 cut(s) 73, 297, 441, 553, 660, 717
BstDSI CCRYGG 1 cut(s) 687
BstF5I GGATG 2 cut(s) 211, 1091
BstFNI CGCG 1 cut(s) 195
BstHHI GCGC 1 cut(s) 197
BstKTI GATC 4 cut(s) 85, 322, 496, 949
BstMAI GTCTC 1 cut(s) 151
BstMBI GATC 4 cut(s) 82, 319, 493, 946
BstMCI CGRYCG 1 cut(s) 226
BstMWI GCNNNNNNNGC 5 cut(s) 455, 509, 595, 719, 992
BstNI CCWGG 1 cut(s) 491
BstNSI RCATGY 1 cut(s) 404
BstSCI CCNGG 1 cut(s) 489
BstSFI CTRYAG 2 cut(s) 124, 348
BstSLI GKGCMC 1 cut(s) 699
BstUI CGCG 1 cut(s) 195
BstV1I GCAGC 1 cut(s) 8
BstV2I GAAGAC 1 cut(s) 572
BsuI GTATCC 1 cut(s) 800
BsuRI GGCC 4 cut(s) 249, 503, 578, 1202
BtgI CCRYGG 1 cut(s) 687
BtsCI GGATG 2 cut(s) 211, 1091
BtsIMutI CAGTG 2 cut(s) 345, 570
Cac8I GCNNGC 3 cut(s) 456, 666, 1265
CciI TCATGA 1 cut(s) 370
CfoI GCGC 1 cut(s) 197
Cfr10I RCCGGY 2 cut(s) 221, 664
Cfr13I GGNCC 1 cut(s) 1201
CseI GACGC 3 cut(s) 167, 702, 1220
Csp6I GTAC 2 cut(s) 423, 880
CviAII CATG 6 cut(s) 104, 274, 371, 401, 580, 992
CviQI GTAC 2 cut(s) 423, 880
DdeI CTNAG 6 cut(s) 73, 297, 441, 553, 660, 717
DpnI GATC 4 cut(s) 84, 321, 495, 948
DpnII GATC 4 cut(s) 82, 319, 493, 946
DrdI GACNNNNNNGTC 1 cut(s) 164
DriI GACNNNNNGTC 1 cut(s) 862
DseDI GACNNNNNNGTC 1 cut(s) 164
EaeI YGGCCR 1 cut(s) 576
Eam1105I GACNNNNNGTC 1 cut(s) 862
EciI GGCGGA 2 cut(s) 258, 928
Ecl136II GAGCTC 1 cut(s) 259
Eco130I CCWWGG 1 cut(s) 802
Eco147I AGGCCT 1 cut(s) 503
Eco24I GRGCYC 1 cut(s) 261
Eco53kI GAGCTC 1 cut(s) 259
Eco57I CTGAAG 2 cut(s) 937, 1179
Eco88I CYCGRG 1 cut(s) 254
EcoICRI GAGCTC 1 cut(s) 259
EcoRI GAATTC 1 cut(s) 649
EcoRII CCWGG 1 cut(s) 489
EcoT14I CCWWGG 1 cut(s) 802
EcoT38I GRGCYC 1 cut(s) 261
ErhI CCWWGG 1 cut(s) 802
FaeI CATG 6 cut(s) 107, 277, 374, 404, 583, 995
FatI CATG 6 cut(s) 103, 273, 370, 400, 579, 991
FauNDI CATATG 3 cut(s) 701, 1120, 1206
FbaI TGATCA 1 cut(s) 946
FblI GTMKAC 2 cut(s) 351, 1055
Fnu4HI GCNGC 2 cut(s) 22, 193
FokI GGATG 2 cut(s) 198, 1098
FriOI GRGCYC 1 cut(s) 261
Fsp4HI GCNGC 2 cut(s) 22, 193
FspBI CTAG 8 cut(s) 65, 218, 450, 539, 723, 840, 975, 998
GlaI GCGC 1 cut(s) 196
GluI GCNGC 2 cut(s) 22, 193
GsaI CCCAGC 1 cut(s) 527
HaeIII GGCC 4 cut(s) 249, 503, 578, 1202
HapII CCGG 2 cut(s) 222, 665
HgaI GACGC 3 cut(s) 167, 702, 1220
HhaI GCGC 1 cut(s) 197
Hin1I GRCGYC 1 cut(s) 159
Hin1II CATG 6 cut(s) 107, 277, 374, 404, 583, 995
Hin6I GCGC 1 cut(s) 195
HinP1I GCGC 1 cut(s) 195
HincII GTYRAC 2 cut(s) 169, 1056
HindII GTYRAC 2 cut(s) 169, 1056
HinfI GANTC 6 cut(s) 77, 182, 299, 305, 778, 1136
HpaII CCGG 2 cut(s) 222, 665
HphI GGTGA 3 cut(s) 19, 476, 866
Hpy166II GTNNAC 5 cut(s) 169, 352, 730, 1056, 1193
Hpy188I TCNGA 7 cut(s) 33, 76, 82, 304, 442, 556, 1182
Hpy188III TCNNGA 8 cut(s) 254, 323, 371, 910, 955, 1037, 1113, 1157
Hpy8I GTNNAC 5 cut(s) 169, 352, 730, 1056, 1193
HpyAV CCTTC 6 cut(s) 907, 998, 1004, 1150, 1154, 1157
HpyCH4III ACNGT 4 cut(s) 349, 574, 678, 688
HpyCH4IV ACGT 1 cut(s) 930
HpyCH4V TGCA 6 cut(s) 55, 267, 458, 787, 821, 1249
HpyF10VI GCNNNNNNNGC 5 cut(s) 455, 509, 595, 719, 992
HpyF3I CTNAG 6 cut(s) 73, 297, 441, 553, 660, 717
HpySE526I ACGT 1 cut(s) 930
Hsp92I GRCGYC 1 cut(s) 159
Hsp92II CATG 6 cut(s) 107, 277, 374, 404, 583, 995
HspAI GCGC 1 cut(s) 195
KroI GCCGGC 1 cut(s) 664
KroNI GCCGGC 1 cut(s) 666
Ksp22I TGATCA 1 cut(s) 946
Kzo9I GATC 4 cut(s) 82, 319, 493, 946
Lsp1109I GCAGC 1 cut(s) 8
LweI GCATC 1 cut(s) 893
MaeI CTAG 8 cut(s) 65, 218, 450, 539, 723, 840, 975, 998
MaeII ACGT 1 cut(s) 930
MaeIII GTNAC 2 cut(s) 854, 1045
MalI GATC 4 cut(s) 84, 321, 495, 948
MboI GATC 4 cut(s) 82, 319, 493, 946
MboII GAAGA 4 cut(s) 571, 574, 577, 1247
MfeI CAATTG 1 cut(s) 471
MhlI GDGCHC 2 cut(s) 261, 699
MlsI TGGCCA 1 cut(s) 578
MluCI AATT 6 cut(s) 87, 366, 471, 603, 649, 922
MluNI TGGCCA 1 cut(s) 578
MlyI GAGTC 3 cut(s) 176, 308, 787
MmeI TCCRAC 1 cut(s) 215
MnlI CCTC 8 cut(s) 49, 239, 371, 625, 768, 895, 1033, 1154
Mox20I TGGCCA 1 cut(s) 578
MroNI GCCGGC 1 cut(s) 664
MscI TGGCCA 1 cut(s) 578
MseI TTAA 1 cut(s) 615
MslI CAYNNNNRTG 2 cut(s) 735, 1230
Msp20I TGGCCA 1 cut(s) 578
MspA1I CMGCKG 1 cut(s) 527
MspCI CTTAAG 1 cut(s) 614
MspI CCGG 2 cut(s) 222, 665
MspR9I CCNGG 1 cut(s) 491
MunI CAATTG 1 cut(s) 471
MvaI CCWGG 1 cut(s) 491
MvnI CGCG 1 cut(s) 195
MwoI GCNNNNNNNGC 5 cut(s) 455, 509, 595, 719, 992
NaeI GCCGGC 1 cut(s) 666
NdeI CATATG 3 cut(s) 701, 1120, 1206
NdeII GATC 4 cut(s) 82, 319, 493, 946
NgoMIV GCCGGC 1 cut(s) 664
NlaIII CATG 6 cut(s) 107, 277, 374, 404, 583, 995
NlaIV GGNNCC 2 cut(s) 204, 959
NmuCI GTSAC 2 cut(s) 854, 1045
NspI RCATGY 1 cut(s) 404
NspV TTCGAA 1 cut(s) 308
PaeR7I CTCGAG 1 cut(s) 254
PagI TCATGA 1 cut(s) 370
PceI AGGCCT 1 cut(s) 503
PdiI GCCGGC 1 cut(s) 666
PfeI GAWTC 3 cut(s) 77, 305, 1136
PflFI GACNNNGTC 1 cut(s) 1051
PfoI TCCNGGA 1 cut(s) 489
PkrI GCNGC 2 cut(s) 23, 194
PleI GAGTC 3 cut(s) 176, 307, 786
PpsI GAGTC 3 cut(s) 176, 307, 786
Ppu21I YACGTR 1 cut(s) 931
Psp124BI GAGCTC 1 cut(s) 261
Psp6I CCWGG 1 cut(s) 489
PspFI CCCAGC 1 cut(s) 523
PspGI CCWGG 1 cut(s) 489
PspN4I GGNNCC 2 cut(s) 204, 959
PspPI GGNCC 1 cut(s) 1201
PsyI GACNNNGTC 1 cut(s) 1051
PvuII CAGCTG 1 cut(s) 527
RsaI GTAC 2 cut(s) 424, 881
RsaNI GTAC 2 cut(s) 423, 880
RseI CAYNNNNRTG 2 cut(s) 735, 1230
SacI GAGCTC 1 cut(s) 261
SalI GTCGAC 1 cut(s) 1054
SaqAI TTAA 1 cut(s) 615
SatI GCNGC 2 cut(s) 22, 193
Sau3AI GATC 4 cut(s) 82, 319, 493, 946
Sau96I GGNCC 1 cut(s) 1201
SchI GAGTC 3 cut(s) 176, 308, 787
ScrFI CCNGG 1 cut(s) 491
SduI GDGCHC 2 cut(s) 261, 699
SfaNI GCATC 1 cut(s) 893
SfcI CTRYAG 2 cut(s) 124, 348
Sfr274I CTCGAG 1 cut(s) 254
SfuI TTCGAA 1 cut(s) 308
SlaI CTCGAG 1 cut(s) 254
SmiMI CAYNNNNRTG 2 cut(s) 735, 1230
SmlI CTYRAG 3 cut(s) 254, 614, 1037
SmoI CTYRAG 3 cut(s) 254, 614, 1037
Sse9I AATT 6 cut(s) 87, 366, 471, 603, 649, 922
SseBI AGGCCT 1 cut(s) 503
SsiI CCGC 4 cut(s) 193, 243, 939, 1061
SspMI CTAG 8 cut(s) 65, 218, 450, 539, 723, 840, 975, 998
SstI GAGCTC 1 cut(s) 261
StuI AGGCCT 1 cut(s) 503
StyD4I CCNGG 1 cut(s) 489
StyI CCWWGG 1 cut(s) 802
TaaI ACNGT 4 cut(s) 349, 574, 678, 688
TaiI ACGT 1 cut(s) 933
TaqI TCGA 9 cut(s) 255, 261, 308, 496, 514, 887, 909, 920, 1055
TasI AATT 6 cut(s) 87, 366, 471, 603, 649, 922
TatI WGTACW 1 cut(s) 422
TauI GCSGC 1 cut(s) 195
TfiI GAWTC 3 cut(s) 77, 305, 1136
Tru1I TTAA 1 cut(s) 615
Tru9I TTAA 1 cut(s) 615
TscAI CASTG 2 cut(s) 352, 577
TseFI GTSAC 2 cut(s) 854, 1045
TseI GCWGC 1 cut(s) 21
Tsp45I GTSAC 2 cut(s) 854, 1045
TspDTI ATGAA 8 cut(s) 277, 359, 387, 419, 424, 753, 980, 1248
TspGWI ACGGA 1 cut(s) 914
TspRI CASTG 2 cut(s) 352, 577
Tth111I GACNNNGTC 1 cut(s) 1051
Vha464I CTTAAG 1 cut(s) 614
XapI RAATTY 1 cut(s) 649
XceI RCATGY 1 cut(s) 404
XcmI CCANNNNNNNNNTGG 1 cut(s) 809
XhoI CTCGAG 1 cut(s) 254
XmiI GTMKAC 2 cut(s) 351, 1055
XspI CTAG 8 cut(s) 65, 218, 450, 539, 723, 840, 975, 998
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.