Prupe.1G081100_v2.0.a1

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Reverse (-)
5938673 .. 5940402
1730 bp
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UTR
Exon/CDS
Intron
Prupe.1G081100.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 240 bp
ATGGCTATGGAAATTGTGAATTCGAATTGTTCTCCAACTCCTGGAGCTTTGGGTTTCTTTATAAGATGTTTAGGTAGCGTAGAGTTGGTTCAAGAAGCTAAGGGCCTTTTTGGTATTCAACTTGAATCCAACTTTTTAAACTCAAAAACAAAATTTGAGTCCAAAACAAAGGAAACCTATTTGGTAGTCCTATTTTTAAAAACTCAAACAAGAACAACTAAAAAACACCCCAATTATTAA

Protein Analysis

80

Amino Acids

8.88

Weight (kDa)

9.3

Isoelectric Point (pI)

20.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 62
AccB7I CCANNNNNTGG 1 cut(s) 41
AcsI RAATTY 2 cut(s) 19, 152
AfiI CCNNNNNNNGG 1 cut(s) 41
AgsI TTSAA 3 cut(s) 92, 119, 125
AjnI CCWGG 1 cut(s) 40
AluBI AGCT 2 cut(s) 47, 98
AluI AGCT 2 cut(s) 47, 98
AoxI GGCC 1 cut(s) 103
ApoI RAATTY 2 cut(s) 19, 152
ArsI GACNNNNNNTTYG 2 cut(s) 143, 175
AspS9I GGNCC 1 cut(s) 103
AsuII TTCGAA 1 cut(s) 23
BciT130I CCWGG 1 cut(s) 42
Bme1390I CCNGG 1 cut(s) 42
BmgT120I GGNCC 1 cut(s) 103
BmrFI CCNGG 1 cut(s) 42
BpmI CTGGAG 1 cut(s) 63
Bpu10I CCTNAGC 1 cut(s) 99
Bpu14I TTCGAA 1 cut(s) 23
Bsc4I CCNNNNNNNGG 1 cut(s) 41
BseBI CCWGG 1 cut(s) 42
BseLI CCNNNNNNNGG 1 cut(s) 41
BshFI GGCC 1 cut(s) 105
BslI CCNNNNNNNGG 1 cut(s) 41
BsnI GGCC 1 cut(s) 105
Bsp119I TTCGAA 1 cut(s) 23
BspANI GGCC 1 cut(s) 105
BspT104I TTCGAA 1 cut(s) 23
Bst2UI CCWGG 1 cut(s) 42
BstBI TTCGAA 1 cut(s) 23
BstDEI CTNAG 1 cut(s) 99
BstNI CCWGG 1 cut(s) 42
BstSCI CCNGG 1 cut(s) 40
BsuRI GGCC 1 cut(s) 105
Cfr13I GGNCC 1 cut(s) 103
CviJI RGCY 4 cut(s) 5, 47, 98, 105
CviKI_1 RGCY 4 cut(s) 5, 47, 98, 105
DdeI CTNAG 1 cut(s) 99
DraI TTTAAA 2 cut(s) 138, 198
EcoO109I RGGNCCY 1 cut(s) 103
EcoRI GAATTC 1 cut(s) 19
EcoRII CCWGG 1 cut(s) 40
FaiI YATR 2 cut(s) 8, 62
GsuI CTGGAG 1 cut(s) 63
HaeIII GGCC 1 cut(s) 105
HinfI GANTC 2 cut(s) 125, 158
Hpy188III TCNNGA 1 cut(s) 92
HpyF3I CTNAG 1 cut(s) 99
LmnI GCTCC 1 cut(s) 44
LpnPI CCDG 2 cut(s) 27, 54
MluCI AATT 5 cut(s) 12, 19, 25, 152, 232
MlyI GAGTC 1 cut(s) 167
MmeI TCCRAC 2 cut(s) 59, 153
MseI TTAA 3 cut(s) 137, 197, 238
MspR9I CCNGG 1 cut(s) 42
MvaI CCWGG 1 cut(s) 42
NspV TTCGAA 1 cut(s) 23
PfeI GAWTC 1 cut(s) 125
PflMI CCANNNNNTGG 1 cut(s) 41
PfoI TCCNGGA 1 cut(s) 40
PleI GAGTC 1 cut(s) 166
PpsI GAGTC 1 cut(s) 166
PsiI TTATAA 1 cut(s) 62
Psp6I CCWGG 1 cut(s) 40
PspGI CCWGG 1 cut(s) 40
PspPI GGNCC 1 cut(s) 103
PsrI GAACNNNNNNTAC 2 cut(s) 72, 104
SaqAI TTAA 3 cut(s) 137, 197, 238
Sau96I GGNCC 1 cut(s) 103
SchI GAGTC 1 cut(s) 167
ScrFI CCNGG 1 cut(s) 42
SetI ASST 4 cut(s) 49, 76, 100, 179
SfuI TTCGAA 1 cut(s) 23
SgeI CNNG 5 cut(s) 53, 54, 104, 134, 222
Sse9I AATT 5 cut(s) 12, 19, 25, 152, 232
StyD4I CCNGG 1 cut(s) 40
TaqI TCGA 1 cut(s) 23
TasI AATT 5 cut(s) 12, 19, 25, 152, 232
TfiI GAWTC 1 cut(s) 125
Tru1I TTAA 3 cut(s) 137, 197, 238
Tru9I TTAA 3 cut(s) 137, 197, 238
Van91I CCANNNNNTGG 1 cut(s) 41
XapI RAATTY 2 cut(s) 19, 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.