Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

6090756 .. 6091100

Gene Structure 345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G082100.1_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGATTTTCCAGGCGAAATTGACTACAAATATTAGGTACGATTTGGCTTTAAAACATGTCAATGGAGATCCTCGACCATTTACTAGAATGACAAATAAATTGTTGTTTTGCCTTGCTGCCGAAGCCTCTGAGGCTTACAAGTATGCAGTCAAGACGGTATCGGTTTACGAATCACACATATTCATGCGCTGGCTGGATAGAAAACAGAAACTTCATGCTAAGGTTCAATGCACAAAGGATCTTTCTACTAATGATGGTTTGATATGTCTTGATAATTTAATTAGGGAACTTCCAACTTATTGTGATCGGAAAACAGGAGCCATGATTTACTGTGAGAGTTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0030312 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1204 Stress-antifung

Protein Analysis

115

Amino Acids

13.26

Weight (kDa)

8.99

Isoelectric Point (pI)

33.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	62, 246
AfaI	GTAC	1 cut(s)	38
AflIII	ACRYGT	1 cut(s)	55
AgsI	TTSAA	1 cut(s)	227
AjnI	CCWGG	1 cut(s)	9
AlwI	GGATC	2 cut(s)	62, 246
ApeKI	GCWGC	1 cut(s)	116
AspLEI	GCGC	1 cut(s)	189
BbvI	GCAGC	1 cut(s)	103
BccI	CCATC	1 cut(s)	248
BciT130I	CCWGG	1 cut(s)	11
BfaI	CTAG	1 cut(s)	84
BglI	GCCNNNNNGGC	1 cut(s)	131
BisI	GCNGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	118
Bme1390I	CCNGG	1 cut(s)	11
BmiI	GGNNCC	1 cut(s)	319
BmrFI	CCNGG	1 cut(s)	11
Bpu10I	CCTNAGC	1 cut(s)	219
BseBI	CCWGG	1 cut(s)	11
BseMII	CTCAG	1 cut(s)	120
BseXI	GCAGC	1 cut(s)	103
Bsp143I	GATC	3 cut(s)	67, 238, 304
BspCNI	CTCAG	1 cut(s)	121
BspLI	GGNNCC	1 cut(s)	319
BspPI	GGATC	2 cut(s)	62, 246
BssMI	GATC	3 cut(s)	67, 238, 304
Bst2UI	CCWGG	1 cut(s)	11
Bst4CI	ACNGT	2 cut(s)	157, 332
BstC8I	GCNNGC	1 cut(s)	191
BstDEI	CTNAG	2 cut(s)	129, 219
BstHHI	GCGC	1 cut(s)	189
BstKTI	GATC	3 cut(s)	70, 241, 307
BstMBI	GATC	3 cut(s)	67, 238, 304
BstMWI	GCNNNNNNNGC	2 cut(s)	122, 131
BstNI	CCWGG	1 cut(s)	11
BstNSI	RCATGY	1 cut(s)	59
BstSCI	CCNGG	1 cut(s)	9
BstV1I	GCAGC	1 cut(s)	103
BstX2I	RGATCY	2 cut(s)	67, 238
BstYI	RGATCY	2 cut(s)	67, 238
Cac8I	GCNNGC	1 cut(s)	191
CfoI	GCGC	1 cut(s)	189
Csp6I	GTAC	1 cut(s)	37
CviAII	CATG	4 cut(s)	56, 184, 215, 322
CviJI	RGCY	5 cut(s)	47, 125, 134, 193, 320
CviKI_1	RGCY	5 cut(s)	47, 125, 134, 193, 320
CviQI	GTAC	1 cut(s)	37
DdeI	CTNAG	2 cut(s)	129, 219
DpnI	GATC	3 cut(s)	69, 240, 306
DpnII	GATC	3 cut(s)	67, 238, 304
DraI	TTTAAA	1 cut(s)	51
EcoRII	CCWGG	1 cut(s)	9
FaeI	CATG	4 cut(s)	59, 187, 218, 325
FaiI	YATR	7 cut(s)	57, 144, 179, 185, 216, 265, 323
FatI	CATG	4 cut(s)	55, 183, 214, 321
Fnu4HI	GCNGC	1 cut(s)	117
Fsp4HI	GCNGC	1 cut(s)	117
FspBI	CTAG	1 cut(s)	84
GlaI	GCGC	1 cut(s)	188
GluI	GCNGC	1 cut(s)	117
HhaI	GCGC	1 cut(s)	189
Hin1II	CATG	4 cut(s)	59, 187, 218, 325
Hin6I	GCGC	1 cut(s)	187
HinP1I	GCGC	1 cut(s)	187
HinfI	GANTC	1 cut(s)	170
Hpy166II	GTNNAC	1 cut(s)	166
Hpy188I	TCNGA	2 cut(s)	130, 309
Hpy188III	TCNNGA	2 cut(s)	151, 269
Hpy8I	GTNNAC	1 cut(s)	166
HpyCH4III	ACNGT	2 cut(s)	157, 332
HpyCH4V	TGCA	2 cut(s)	146, 231
HpyF10VI	GCNNNNNNNGC	2 cut(s)	122, 131
HpyF3I	CTNAG	2 cut(s)	129, 219
Hsp92II	CATG	4 cut(s)	59, 187, 218, 325
HspAI	GCGC	1 cut(s)	187
Kzo9I	GATC	3 cut(s)	67, 238, 304
LmnI	GCTCC	1 cut(s)	317
LpnPI	CCDG	4 cut(s)	23, 175, 179, 300
Lsp1109I	GCAGC	1 cut(s)	103
MaeI	CTAG	1 cut(s)	84
MalI	GATC	3 cut(s)	69, 240, 306
MboI	GATC	3 cut(s)	67, 238, 304
MflI	RGATCY	2 cut(s)	67, 238
MluCI	AATT	4 cut(s)	17, 98, 274, 279
MmeI	TCCRAC	1 cut(s)	317
MnlI	CCTC	3 cut(s)	81, 124, 136
MseI	TTAA	2 cut(s)	50, 278
MslI	CAYNNNNRTG	2 cut(s)	60, 182
MspR9I	CCNGG	1 cut(s)	11
MvaI	CCWGG	1 cut(s)	11
MwoI	GCNNNNNNNGC	2 cut(s)	122, 131
NdeII	GATC	3 cut(s)	67, 238, 304
NlaIII	CATG	4 cut(s)	59, 187, 218, 325
NlaIV	GGNNCC	1 cut(s)	319
NspI	RCATGY	1 cut(s)	59
PciI	ACATGT	1 cut(s)	55
PfeI	GAWTC	1 cut(s)	170
PkrI	GCNGC	1 cut(s)	118
PscI	ACATGT	1 cut(s)	55
Psp6I	CCWGG	1 cut(s)	9
PspGI	CCWGG	1 cut(s)	9
PspN4I	GGNNCC	1 cut(s)	319
PsuI	RGATCY	2 cut(s)	67, 238
RsaI	GTAC	1 cut(s)	38
RsaNI	GTAC	1 cut(s)	37
RseI	CAYNNNNRTG	2 cut(s)	60, 182
SaqAI	TTAA	2 cut(s)	50, 278
SatI	GCNGC	1 cut(s)	117
Sau3AI	GATC	3 cut(s)	67, 238, 304
ScrFI	CCNGG	1 cut(s)	11
SetI	ASST	2 cut(s)	38, 225
SmiMI	CAYNNNNRTG	2 cut(s)	60, 182
Sse9I	AATT	4 cut(s)	17, 98, 274, 279
SspI	AATATT	1 cut(s)	31
SspMI	CTAG	1 cut(s)	84
StyD4I	CCNGG	1 cut(s)	9
TaaI	ACNGT	2 cut(s)	157, 332
TaqI	TCGA	1 cut(s)	73
TasI	AATT	4 cut(s)	17, 98, 274, 279
TfiI	GAWTC	1 cut(s)	170
Tru1I	TTAA	2 cut(s)	50, 278
Tru9I	TTAA	2 cut(s)	50, 278
TseI	GCWGC	1 cut(s)	116
TspDTI	ATGAA	2 cut(s)	172, 203
XceI	RCATGY	1 cut(s)	59
XspI	CTAG	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.