Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

6372256 .. 6373082

Gene Structure 827 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G085700.1_v2.0.a1.CDS.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGCATCAAAACGTCGTCTTGTTAGACAACGGCGGCGGCCTAATCAAAGCTGGACTCGGCTGCGAGTGCGACCCCTCAGCCACAATCCCCAACTGCGGAATGCCAGCAGTTGCTGCCGCCCTTTTGGCTGCACCACTCTCAAAGTGCCGCATCACAATAATATTAAGAGTAACCCTCAACAGTTCTTATGGTGTCCGGAAATCAAGTGCCCATATTATATTACAACCAAATTGTAGCACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGTGGTGGAAGCGGGGATGATGAGATGGGGGTGGGGGAATTGGAATGGGGTCGGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005200 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006338 GO:0006355 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007275 GO:0008150 GO:0008283 GO:0009266 GO:0009628 GO:0009791 GO:0009845 GO:0009889 GO:0009909 GO:0009910 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030029 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0090351 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Actin

Protein Analysis

110

Amino Acids

11.5

Weight (kDa)

6.09

Isoelectric Point (pI)

43.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	195
AciI	CCGC	6 cut(s)	33, 36, 96, 117, 148, 282
AfiI	CCNNNNNNNGG	1 cut(s)	95
AluBI	AGCT	1 cut(s)	50
AluI	AGCT	1 cut(s)	50
AlwNI	CAGNNNCTG	1 cut(s)	113
Aor13HI	TCCGGA	1 cut(s)	195
AoxI	GGCC	1 cut(s)	37
ApeKI	GCWGC	3 cut(s)	60, 113, 128
BaeGI	GKGCMC	1 cut(s)	211
BbvCI	CCTCAGC	1 cut(s)	76
BbvI	GCAGC	3 cut(s)	47, 100, 115
BccI	CCATC	1 cut(s)	289
BceAI	ACGGC	1 cut(s)	46
BglI	GCCNNNNNGGC	1 cut(s)	125
BisI	GCNGC	7 cut(s)	34, 37, 61, 114, 117, 129, 148
BlsI	GCNGC	7 cut(s)	35, 38, 62, 115, 118, 130, 149
BmsI	GCATC	2 cut(s)	13, 159
BplI	GAGNNNNNCTC	2 cut(s)	159, 191
Bpu10I	CCTNAGC	1 cut(s)	76
BsaWI	WCCGGW	1 cut(s)	195
Bsc4I	CCNNNNNNNGG	1 cut(s)	95
BseAI	TCCGGA	1 cut(s)	195
BseGI	GGATG	1 cut(s)	292
BseLI	CCNNNNNNNGG	1 cut(s)	95
BseMII	CTCAG	1 cut(s)	90
BseSI	GKGCMC	1 cut(s)	211
BseXI	GCAGC	3 cut(s)	47, 100, 115
BsgI	GTGCAG	1 cut(s)	114
BshFI	GGCC	1 cut(s)	39
BsiSI	CCGG	1 cut(s)	196
BslI	CCNNNNNNNGG	1 cut(s)	95
BsmI	GAATGC	1 cut(s)	105
BsnI	GGCC	1 cut(s)	39
Bsp1286I	GDGCHC	1 cut(s)	211
Bsp13I	TCCGGA	1 cut(s)	195
BspACI	CCGC	6 cut(s)	33, 36, 96, 117, 148, 282
BspANI	GGCC	1 cut(s)	39
BspCNI	CTCAG	1 cut(s)	89
BspEI	TCCGGA	1 cut(s)	195
Bst4CI	ACNGT	1 cut(s)	182
BstAPI	GCANNNNNTGC	1 cut(s)	113
BstC8I	GCNNGC	1 cut(s)	105
BstDEI	CTNAG	1 cut(s)	76
BstF5I	GGATG	1 cut(s)	292
BstMWI	GCNNNNNNNGC	3 cut(s)	66, 113, 125
BstSLI	GKGCMC	1 cut(s)	211
BstV1I	GCAGC	3 cut(s)	47, 100, 115
BsuRI	GGCC	1 cut(s)	39
BtsCI	GGATG	1 cut(s)	292
Cac8I	GCNNGC	1 cut(s)	105
CaiI	CAGNNNCTG	1 cut(s)	113
CviJI	RGCY	5 cut(s)	39, 50, 60, 80, 128
CviKI_1	RGCY	5 cut(s)	39, 50, 60, 80, 128
DdeI	CTNAG	1 cut(s)	76
EcoT22I	ATGCAT	1 cut(s)	6
FaiI	YATR	3 cut(s)	189, 213, 218
FauI	CCCGC	1 cut(s)	275
Fnu4HI	GCNGC	7 cut(s)	34, 37, 61, 114, 117, 129, 148
FokI	GGATG	1 cut(s)	299
Fsp4HI	GCNGC	7 cut(s)	34, 37, 61, 114, 117, 129, 148
GluI	GCNGC	7 cut(s)	34, 37, 61, 114, 117, 129, 148
HaeIII	GGCC	1 cut(s)	39
HapII	CCGG	1 cut(s)	196
HinfI	GANTC	1 cut(s)	54
HpaII	CCGG	1 cut(s)	196
Hpy188III	TCNNGA	1 cut(s)	196
Hpy99I	CGWCG	1 cut(s)	17
HpyCH4III	ACNGT	1 cut(s)	182
HpyCH4IV	ACGT	1 cut(s)	12
HpyCH4V	TGCA	2 cut(s)	4, 131
HpyF10VI	GCNNNNNNNGC	3 cut(s)	66, 113, 125
HpyF3I	CTNAG	1 cut(s)	76
HpySE526I	ACGT	1 cut(s)	12
Kpn2I	TCCGGA	1 cut(s)	195
LpnPI	CCDG	3 cut(s)	36, 117, 209
Lsp1109I	GCAGC	3 cut(s)	47, 100, 115
LweI	GCATC	2 cut(s)	13, 159
MaeII	ACGT	1 cut(s)	12
MaeIII	GTNAC	1 cut(s)	169
MhlI	GDGCHC	1 cut(s)	211
MluCI	AATT	2 cut(s)	229, 308
MlyI	GAGTC	1 cut(s)	48
MnlI	CCTC	3 cut(s)	85, 185, 263
Mph1103I	ATGCAT	1 cut(s)	6
MroI	TCCGGA	1 cut(s)	195
MseI	TTAA	1 cut(s)	164
MspI	CCGG	1 cut(s)	196
Mva1269I	GAATGC	1 cut(s)	105
MwoI	GCNNNNNNNGC	3 cut(s)	66, 113, 125
NmeAIII	GCCGAG	1 cut(s)	36
NsiI	ATGCAT	1 cut(s)	6
PctI	GAATGC	1 cut(s)	105
PkrI	GCNGC	7 cut(s)	35, 38, 62, 115, 118, 130, 149
PleI	GAGTC	1 cut(s)	48
PpsI	GAGTC	1 cut(s)	48
PstNI	CAGNNNCTG	1 cut(s)	113
SaqAI	TTAA	1 cut(s)	164
SatI	GCNGC	7 cut(s)	34, 37, 61, 114, 117, 129, 148
SchI	GAGTC	1 cut(s)	48
SduI	GDGCHC	1 cut(s)	211
SetI	ASST	3 cut(s)	15, 52, 274
SfaNI	GCATC	2 cut(s)	13, 159
SgeI	CNNG	8 cut(s)	31, 63, 68, 76, 116, 208, 216, 295
Sse9I	AATT	2 cut(s)	229, 308
SsiI	CCGC	6 cut(s)	33, 36, 96, 117, 148, 282
SspI	AATATT	1 cut(s)	162
TaaI	ACNGT	1 cut(s)	182
TaiI	ACGT	1 cut(s)	15
TasI	AATT	2 cut(s)	229, 308
TauI	GCSGC	4 cut(s)	36, 39, 119, 150
Tru1I	TTAA	1 cut(s)	164
Tru9I	TTAA	1 cut(s)	164
TseI	GCWGC	3 cut(s)	60, 113, 128
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.