Prupe.1G088700_v2.0.a1
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Reverse (-)
6635984 .. 6637464
1481 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G088700.1

Sequence Viewer

Length: 966 bp
ATGGAGAAGCAAAGTATAAGTAGCAAAGCTTCCATTGTCACCAAGAATGGCAGTGATCTCCATGGAGGACATACTGGCAGTTATGATTCTTATTATGATGATGCTTCTTACTTCGATTCAATTCCACCGGGGTATAGATTCAAACCCTTGGATGGAGAACTTGTTGCTATCTACTTGAGGAAGAAAATCGCCAACGAACCATTGCCTCCGAATAAGATTCATGATGTTGAACTGTACAGATTCAACCCAGACACACTGTCAGAAATTTACGAGTCATATGGAGAAGATGAGATGTACTTCTTCACATCAAGGGACAAAAAGTACCCTAATGGTGCACGTCCGAACCGAGCAGCAGGGGATGGATACTGGAAAGCTACTGGGGTTAAAAAAATAGTGAAGTTTGAGGATGTTGAAGTTGGTAGCAAGACATCACTGGTTTTCTACAGAGGAAAACCTCCCCATGGTGACAAGACAGACTGGAAGATGCATGAATTCCAAGTCAATGCTCCTCCCAAGAGAAAAGACAGAAATGACATGAGGCTTGATGACTGTGTTTTGTGTAGGATATATAACAAACACAACCACTCGAAAGATTCGAACCAATCGAATAATAATGGTGTCGAAATTCAGGAACAACACAATGTTGGAAGTAATTCACAAGACAATGCACATGTTTCTGGTGAAGTAGTCGATCATCCTCCAGCAAACTCACATGAGCTAACTTCTTTGTTGTCTAACCAGAAGTGTTATTACAATACTGATCAATCAGAAAATCTCAACAGTGCAAATTGTATAGGTTTTGATGGTCCTTTTGGAGTGGTATCAATTTCATCAGCGCTTCCATTCCAGAATCCTCAGCAATTCAATGGGTATCAAAAACGTCAACGTTTTTGCGATTTACCATCAGAATTTTATACTAACTATGACCAATGGCTCAATGACACAGCCAAAGACTTAACCCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

322

Amino Acids

36.56

Weight (kDa)

5.95

Isoelectric Point (pI)

37.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 886
AcsI RAATTY 4 cut(s) 264, 491, 624, 908
AfaI GTAC 3 cut(s) 236, 296, 323
AfeI AGCGCT 1 cut(s) 837
AfiI CCNNNNNNNGG 2 cut(s) 152, 461
AflIII ACRYGT 1 cut(s) 670
AgsI TTSAA 6 cut(s) 120, 142, 230, 244, 413, 865
AhdI GACNNNNNGTC 1 cut(s) 256
AjiI CACGTC 1 cut(s) 338
AluBI AGCT 3 cut(s) 29, 374, 718
AluI AGCT 3 cut(s) 29, 374, 718
Alw21I GWGCWC 1 cut(s) 337
Alw44I GTGCAC 1 cut(s) 333
Aor51HI AGCGCT 1 cut(s) 837
ApaLI GTGCAC 1 cut(s) 333
ApeKI GCWGC 1 cut(s) 350
ApoI RAATTY 4 cut(s) 264, 491, 624, 908
Asp700I GAANNNNTTC 1 cut(s) 652
AspLEI GCGC 1 cut(s) 838
AspS9I GGNCC 1 cut(s) 806
AsuC2I CCSGG 1 cut(s) 129
AsuHPI GGTGA 3 cut(s) 31, 476, 692
AsuII TTCGAA 1 cut(s) 596
AvaII GGWCC 1 cut(s) 806
BaeGI GKGCMC 1 cut(s) 337
BarI GAAGNNNNNNTAC 4 cut(s) 13, 45, 734, 766
Bbv12I GWGCWC 1 cut(s) 337
BbvCI CCTCAGC 1 cut(s) 855
BbvI GCAGC 1 cut(s) 362
BccI CCATC 4 cut(s) 146, 353, 797, 910
BciVI GTATCC 1 cut(s) 356
BclI TGATCA 1 cut(s) 760
BcnI CCSGG 1 cut(s) 129
BfmI CTRYAG 1 cut(s) 442
BfoI RGCGCY 1 cut(s) 839
BfuI GTATCC 1 cut(s) 356
BisI GCNGC 1 cut(s) 351
BlsI GCNGC 1 cut(s) 352
Bme1390I CCNGG 1 cut(s) 129
Bme18I GGWCC 1 cut(s) 806
BmeRI GACNNNNNGTC 1 cut(s) 256
BmgBI CACGTC 1 cut(s) 338
BmgT120I GGNCC 1 cut(s) 806
BmrFI CCNGG 1 cut(s) 129
BmrI ACTGGG 1 cut(s) 387
BmsI GCATC 2 cut(s) 91, 474
BmuI ACTGGG 1 cut(s) 387
BpmI CTGGAG 1 cut(s) 684
Bpu10I CCTNAGC 1 cut(s) 855
Bpu14I TTCGAA 1 cut(s) 596
BpuEI CTTGAG 1 cut(s) 196
BpuMI CCSGG 1 cut(s) 129
BsaJI CCNNGG 4 cut(s) 61, 128, 147, 460
BsaXI ACNNNNNCTCC 2 cut(s) 147, 177
Bsc4I CCNNNNNNNGG 2 cut(s) 152, 461
Bse1I ACTGG 5 cut(s) 79, 371, 382, 438, 482
Bse3DI GCAATG 1 cut(s) 200
BseDI CCNNGG 4 cut(s) 61, 128, 147, 460
BseGI GGATG 4 cut(s) 157, 364, 412, 694
BseLI CCNNNNNNNGG 2 cut(s) 152, 461
BseMI GCAATG 1 cut(s) 200
BseMII CTCAG 1 cut(s) 869
BseNI ACTGG 5 cut(s) 79, 371, 382, 438, 482
BseRI GAGGAG 1 cut(s) 498
BseSI GKGCMC 1 cut(s) 337
BseXI GCAGC 1 cut(s) 362
BsiHKAI GWGCWC 1 cut(s) 337
BsiSI CCGG 1 cut(s) 128
BslFI GGGAC 1 cut(s) 326
BslI CCNNNNNNNGG 2 cut(s) 152, 461
BsmFI GGGAC 1 cut(s) 326
Bsp119I TTCGAA 1 cut(s) 596
Bsp1286I GDGCHC 1 cut(s) 337
Bsp1407I TGTACA 1 cut(s) 234
Bsp143I GATC 3 cut(s) 55, 691, 760
Bsp19I CCATGG 2 cut(s) 61, 460
BspCNI CTCAG 1 cut(s) 868
BspHI TCATGA 1 cut(s) 220
BspT104I TTCGAA 1 cut(s) 596
BsrDI GCAATG 1 cut(s) 200
BsrGI TGTACA 1 cut(s) 234
BsrI ACTGG 5 cut(s) 79, 371, 382, 438, 482
BssECI CCNNGG 4 cut(s) 61, 128, 147, 460
BssMI GATC 3 cut(s) 55, 691, 760
BssT1I CCWWGG 3 cut(s) 61, 147, 460
Bst4CI ACNGT 4 cut(s) 234, 258, 551, 782
BstAUI TGTACA 1 cut(s) 234
BstBI TTCGAA 1 cut(s) 596
BstDEI CTNAG 1 cut(s) 855
BstDSI CCRYGG 2 cut(s) 61, 460
BstF5I GGATG 4 cut(s) 157, 364, 412, 694
BstH2I RGCGCY 1 cut(s) 839
BstHHI GCGC 1 cut(s) 838
BstKTI GATC 3 cut(s) 58, 694, 763
BstMBI GATC 3 cut(s) 55, 691, 760
BstNSI RCATGY 1 cut(s) 674
BstSCI CCNGG 1 cut(s) 127
BstSFI CTRYAG 1 cut(s) 442
BstSLI GKGCMC 1 cut(s) 337
BstV1I GCAGC 1 cut(s) 362
BsuI GTATCC 1 cut(s) 356
BtgI CCRYGG 2 cut(s) 61, 460
BtrI CACGTC 1 cut(s) 338
BtsCI GGATG 4 cut(s) 157, 364, 412, 694
BtsI GCAGTG 1 cut(s) 58
BtsIMutI CAGTG 5 cut(s) 58, 254, 431, 787, 961
CciI TCATGA 1 cut(s) 220
CfoI GCGC 1 cut(s) 838
Cfr13I GGNCC 1 cut(s) 806
Csp6I GTAC 3 cut(s) 235, 295, 322
CviAII CATG 7 cut(s) 62, 221, 461, 488, 535, 671, 713
CviJI RGCY 6 cut(s) 29, 374, 541, 718, 934, 947
CviKI_1 RGCY 6 cut(s) 29, 374, 541, 718, 934, 947
CviQI GTAC 3 cut(s) 235, 295, 322
DdeI CTNAG 1 cut(s) 855
DpnI GATC 3 cut(s) 57, 693, 762
DpnII GATC 3 cut(s) 55, 691, 760
DriI GACNNNNNGTC 1 cut(s) 256
Eam1105I GACNNNNNGTC 1 cut(s) 256
Eco130I CCWWGG 3 cut(s) 61, 147, 460
Eco47I GGWCC 1 cut(s) 806
Eco47III AGCGCT 1 cut(s) 837
EcoRI GAATTC 1 cut(s) 491
EcoT14I CCWWGG 3 cut(s) 61, 147, 460
EcoT22I ATGCAT 1 cut(s) 489
ErhI CCWWGG 3 cut(s) 61, 147, 460
FaeI CATG 7 cut(s) 65, 224, 464, 491, 538, 674, 716
FaqI GGGAC 1 cut(s) 326
FatI CATG 7 cut(s) 61, 220, 460, 487, 534, 670, 712
FauNDI CATATG 1 cut(s) 277
FbaI TGATCA 1 cut(s) 760
Fnu4HI GCNGC 1 cut(s) 351
FokI GGATG 4 cut(s) 164, 371, 419, 681
Fsp4HI GCNGC 1 cut(s) 351
GlaI GCGC 1 cut(s) 837
GluI GCNGC 1 cut(s) 351
GsuI CTGGAG 1 cut(s) 684
HaeII RGCGCY 1 cut(s) 839
HapII CCGG 1 cut(s) 128
HhaI GCGC 1 cut(s) 838
Hin1II CATG 7 cut(s) 65, 224, 464, 491, 538, 674, 716
Hin6I GCGC 1 cut(s) 836
HinP1I GCGC 1 cut(s) 836
HincII GTYRAC 1 cut(s) 884
HindII GTYRAC 1 cut(s) 884
HindIII AAGCTT 1 cut(s) 27
HinfI GANTC 8 cut(s) 86, 116, 138, 217, 240, 272, 593, 850
HpaII CCGG 1 cut(s) 128
HphI GGTGA 3 cut(s) 31, 476, 692
Hpy166II GTNNAC 2 cut(s) 335, 884
Hpy188I TCNGA 5 cut(s) 210, 262, 342, 769, 907
Hpy188III TCNNGA 3 cut(s) 221, 629, 847
Hpy8I GTNNAC 2 cut(s) 335, 884
HpyCH4III ACNGT 4 cut(s) 234, 258, 551, 782
HpyCH4IV ACGT 3 cut(s) 337, 880, 886
HpyCH4V TGCA 4 cut(s) 335, 487, 668, 785
HpyF3I CTNAG 1 cut(s) 855
HpySE526I ACGT 3 cut(s) 337, 880, 886
Hsp92II CATG 7 cut(s) 65, 224, 464, 491, 538, 674, 716
HspAI GCGC 1 cut(s) 836
Ksp22I TGATCA 1 cut(s) 760
Kzo9I GATC 3 cut(s) 55, 691, 760
LmnI GCTCC 1 cut(s) 511
Lsp1109I GCAGC 1 cut(s) 362
LweI GCATC 2 cut(s) 91, 474
MaeII ACGT 3 cut(s) 337, 880, 886
MaeIII GTNAC 2 cut(s) 37, 464
MalI GATC 3 cut(s) 57, 693, 762
MboI GATC 3 cut(s) 55, 691, 760
MboII GAAGA 4 cut(s) 193, 292, 296, 493
MhlI GDGCHC 1 cut(s) 337
MluCI AATT 9 cut(s) 120, 264, 491, 624, 652, 787, 825, 860, 908
MlyI GAGTC 1 cut(s) 281
MmeI TCCRAC 1 cut(s) 625
Mph1103I ATGCAT 1 cut(s) 489
MroXI GAANNNNTTC 1 cut(s) 652
MseI TTAA 2 cut(s) 384, 956
MspI CCGG 1 cut(s) 128
MspR9I CCNGG 1 cut(s) 129
NciI CCSGG 1 cut(s) 129
NcoI CCATGG 2 cut(s) 61, 460
NdeI CATATG 1 cut(s) 277
NdeII GATC 3 cut(s) 55, 691, 760
NlaIII CATG 7 cut(s) 65, 224, 464, 491, 538, 674, 716
NmuCI GTSAC 2 cut(s) 37, 464
NsiI ATGCAT 1 cut(s) 489
NspI RCATGY 1 cut(s) 674
NspV TTCGAA 1 cut(s) 596
PagI TCATGA 1 cut(s) 220
PciI ACATGT 1 cut(s) 670
PcsI WCGNNNNNNNCGW 3 cut(s) 343, 593, 602
PdmI GAANNNNTTC 1 cut(s) 652
PfeI GAWTC 7 cut(s) 86, 116, 138, 217, 240, 593, 850
PkrI GCNGC 1 cut(s) 352
PleI GAGTC 1 cut(s) 280
PpsI GAGTC 1 cut(s) 280
PscI ACATGT 1 cut(s) 670
Psp1406I AACGTT 1 cut(s) 886
PspPI GGNCC 1 cut(s) 806
RsaI GTAC 3 cut(s) 236, 296, 323
RsaNI GTAC 3 cut(s) 235, 295, 322
SaqAI TTAA 2 cut(s) 384, 956
SatI GCNGC 1 cut(s) 351
Sau3AI GATC 3 cut(s) 55, 691, 760
Sau96I GGNCC 1 cut(s) 806
SchI GAGTC 1 cut(s) 281
ScrFI CCNGG 1 cut(s) 129
SduI GDGCHC 1 cut(s) 337
SetI ASST 8 cut(s) 31, 340, 376, 457, 720, 799, 883, 889
SfaNI GCATC 2 cut(s) 91, 474
SfcI CTRYAG 1 cut(s) 442
SfuI TTCGAA 1 cut(s) 596
SinI GGWCC 1 cut(s) 806
SmlI CTYRAG 1 cut(s) 175
SmoI CTYRAG 1 cut(s) 175
Sse9I AATT 9 cut(s) 120, 264, 491, 624, 652, 787, 825, 860, 908
StyD4I CCNGG 1 cut(s) 127
StyI CCWWGG 3 cut(s) 61, 147, 460
TaaI ACNGT 4 cut(s) 234, 258, 551, 782
TaiI ACGT 3 cut(s) 340, 883, 889
TaqI TCGA 6 cut(s) 114, 587, 596, 605, 621, 690
TasI AATT 9 cut(s) 120, 264, 491, 624, 652, 787, 825, 860, 908
TatI WGTACW 2 cut(s) 234, 294
TfiI GAWTC 7 cut(s) 86, 116, 138, 217, 240, 593, 850
Tru1I TTAA 2 cut(s) 384, 956
Tru9I TTAA 2 cut(s) 384, 956
TscAI CASTG 4 cut(s) 58, 261, 438, 787
TseFI GTSAC 2 cut(s) 37, 464
TseI GCWGC 1 cut(s) 350
Tsp45I GTSAC 2 cut(s) 37, 464
TspDTI ATGAA 3 cut(s) 209, 504, 819
TspRI CASTG 4 cut(s) 58, 261, 438, 787
VneI GTGCAC 1 cut(s) 333
VpaK11BI GGWCC 1 cut(s) 806
XapI RAATTY 4 cut(s) 264, 491, 624, 908
XceI RCATGY 1 cut(s) 674
XmnI GAANNNNTTC 1 cut(s) 652
Zsp2I ATGCAT 1 cut(s) 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.