Prupe.1G089800_v2.0.a1

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Reverse (-)
6758480 .. 6761778
3299 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G089800.1_v2.0.a1.CDS.7

Sequence Viewer

Length: 1473 bp
ATGAATGCAGAAGAACAAGCAGGTGATCTTAAGTCACTTCCATTTGCAGATCAAGAACATGACTATCAAGAAAGAAAAGGACAACAGCTGACCCGAGATGAGTTTTTCGTGGAAGTGAAGAAGCAGCTGTTGTTAGTAGGGCCTCTTGTGTCATCAAATTTCTTGTTGTTTTGTATACAGGTTGTTTCAGTCATGTATGTTGGTCATCTCGGAGAACTTGCACTTTCAGGTGCTTCCATGGCCACTTCATTCGCTTCAGTAACTGGTATCAGCTTGATGATTGGAATGGGAAGTGCATTGGACACATTTTGTGGCCAGTCCTATGGAGCAAAACAATATCATATGCTTGGTATACATATGCAGAGGGCAATGATTGTTCTTTTGCTGGTCAGCATTCCTCTTGCAGTTGTATGGGCCAATACAGGCTTCATTCTTGAATTTTTGGGTCAAGATCCAGAAATATCTGCTGCTGCTGGGGAATTTGCTTGTTACATGATACCAAGCCTTTTCGCTTACGCAATCCTTCAATGTCATTCCAGATTCTTGCAAACTCAGAACAATGTGGTTCCCATGATTGTTACCACAGGAACTGCAACTCTGCTACACTTGCTTGTCTGTTGGCTTCTGGTATACAAGACCAGCCTTGGATATAAAGGTGCGGCTGTGGCAAACTGCATCGCATATTGGATCAATGCATTGTTATTGTTTCTTTATGTCAGATTCTCTCCCTCTTGTAAGCACACATGGACTGGATTCTCAAAGGAGGCCTTTCACGGAATTCTCAGTTTTCTTAAACTATCCATTCCTTCAGCTGTAATGATCAGCTTAGAAATGTGGTGCTTTGAAATGATGGTCCTCTTATCTGGTCTTCTTCCTAATCCAAAGCTTGAAACCTCAGTCCTGTCAATCAGCCTTAACACATGTGCACTGACTTACATGATCCCCCTCGGACTGGGTGGTGCAGCAAGCACAAGAGTTTCAAATGAATTGGGTGCTGGGAAACCACGACTAGCCCGTCTTGCCATATGTGTTACACTCTCCATGGTTGTTACTGAAGGCATTGTGGTTGTTGCTGTCATGATATTGGGTCGAAAAGTTTGGGGCTACTGTTACACCACAGATAAAGAAGTTGTGGAATATGCTGGAGAAATATTACTGTGGGTTGCAATAGCCCACTTTTTTGATGGAATTCAATCTGTTCTTTCAGGTGTCATAAGAGGAAGTGGGCAGCAAAAGATTGGGGCTTATGTTAATCTTGGAGCTTATTATCTTATAGGCATTCCTATCTCAATTATATTAGCTTTTGTCCTGCACATTGGAGGGAAGGGTCTTTGGATTGGAATTACTGTGGCTCTGTTTGTGCAAGCAGTATCTCTTTCAATCATAGTCACATGCACTAACTGGGAAAAAGAAGTGAAGAAAGCTTCTGATAGAGTGCACAAGACAATGGCTGTGACGGATGCAGCATCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

491

Amino Acids

53.25

Weight (kDa)

7.13

Isoelectric Point (pI)

21.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 11
AasI GACNNNNNNGTC 1 cut(s) 1014
Acc36I ACCTGC 1 cut(s) 11
AccI GTMKAC 3 cut(s) 175, 352, 630
AciI CCGC 1 cut(s) 659
AclWI GGATC 3 cut(s) 446, 695, 934
AcoI YGGCCR 2 cut(s) 240, 313
AcsI RAATTY 5 cut(s) 157, 437, 479, 777, 1188
AcuI CTGAAG 3 cut(s) 240, 792, 1074
AfiI CCNNNNNNNGG 1 cut(s) 952
AflII CTTAAG 1 cut(s) 29
AflIII ACRYGT 1 cut(s) 920
AgsI TTSAA 7 cut(s) 437, 527, 845, 890, 981, 1193, 1380
AjuI GAANNNNNNNTTGG 2 cut(s) 410, 442
AluBI AGCT 9 cut(s) 88, 127, 273, 812, 825, 886, 1262, 1301, 1424
AluI AGCT 9 cut(s) 88, 127, 273, 812, 825, 886, 1262, 1301, 1424
Alw21I GWGCWC 2 cut(s) 928, 1440
Alw44I GTGCAC 2 cut(s) 924, 1436
AlwI GGATC 3 cut(s) 446, 695, 934
AlwNI CAGNNNCTG 2 cut(s) 263, 590
Ama87I CYCGRG 1 cut(s) 93
AoxI GGCC 5 cut(s) 140, 240, 313, 414, 765
ApaLI GTGCAC 2 cut(s) 924, 1436
ApeKI GCWGC 6 cut(s) 124, 467, 470, 962, 1228, 1463
ApoI RAATTY 5 cut(s) 157, 437, 479, 777, 1188
AspS9I GGNCC 3 cut(s) 140, 414, 853
AsuHPI GGTGA 1 cut(s) 35
AvaI CYCGRG 1 cut(s) 93
AvaII GGWCC 1 cut(s) 853
BaeGI GKGCMC 2 cut(s) 928, 1440
BalI TGGCCA 2 cut(s) 242, 315
BbsI GAAGAC 1 cut(s) 860
Bbv12I GWGCWC 2 cut(s) 928, 1440
BbvI GCAGC 5 cut(s) 136, 454, 457, 974, 1240
BccI CCATC 2 cut(s) 844, 1178
BclI TGATCA 1 cut(s) 819
BfaI CTAG 1 cut(s) 1010
BfrI CTTAAG 1 cut(s) 29
BfuAI ACCTGC 1 cut(s) 11
BisI GCNGC 7 cut(s) 125, 468, 471, 660, 963, 1229, 1464
BlsI GCNGC 7 cut(s) 126, 469, 472, 661, 964, 1230, 1465
Bme18I GGWCC 1 cut(s) 853
BmeT110I CYCGRG 1 cut(s) 93
BmgT120I GGNCC 3 cut(s) 140, 414, 853
BmiI GGNNCC 1 cut(s) 567
BmrI ACTGGG 2 cut(s) 962, 1411
BmsI GCATC 2 cut(s) 684, 1450
BmuI ACTGGG 2 cut(s) 962, 1411
BpiI GAAGAC 1 cut(s) 860
BpmI CTGGAG 1 cut(s) 1164
BsaJI CCNNGG 4 cut(s) 237, 643, 946, 1041
Bsc4I CCNNNNNNNGG 1 cut(s) 952
Bse1I ACTGG 5 cut(s) 268, 316, 754, 957, 1406
Bse3DI GCAATG 1 cut(s) 375
BseDI CCNNGG 4 cut(s) 237, 643, 946, 1041
BseGI GGATG 1 cut(s) 1465
BseLI CCNNNNNNNGG 1 cut(s) 952
BseMI GCAATG 1 cut(s) 375
BseMII CTCAG 3 cut(s) 566, 796, 909
BseNI ACTGG 5 cut(s) 268, 316, 754, 957, 1406
BseSI GKGCMC 2 cut(s) 928, 1440
BseXI GCAGC 5 cut(s) 136, 454, 457, 974, 1240
BseYI CCCAGC 2 cut(s) 473, 995
BsgI GTGCAG 2 cut(s) 981, 1295
BshFI GGCC 5 cut(s) 142, 242, 315, 416, 767
BsiHKAI GWGCWC 2 cut(s) 928, 1440
BsiHKCI CYCGRG 1 cut(s) 93
BslI CCNNNNNNNGG 1 cut(s) 952
BsmI GAATGC 3 cut(s) 10, 393, 1278
BsnI GGCC 5 cut(s) 142, 242, 315, 416, 767
BsoBI CYCGRG 1 cut(s) 93
Bsp1286I GDGCHC 2 cut(s) 928, 1440
Bsp143I GATC 6 cut(s) 25, 49, 451, 687, 819, 939
Bsp19I CCATGG 2 cut(s) 237, 1041
BspACI CCGC 1 cut(s) 659
BspANI GGCC 5 cut(s) 142, 242, 315, 416, 767
BspCNI CTCAG 3 cut(s) 565, 795, 908
BspHI TCATGA 1 cut(s) 1077
BspLI GGNNCC 1 cut(s) 567
BspMI ACCTGC 1 cut(s) 11
BspPI GGATC 3 cut(s) 446, 695, 934
BspTI CTTAAG 1 cut(s) 29
BsrDI GCAATG 1 cut(s) 375
BsrI ACTGG 5 cut(s) 268, 316, 754, 957, 1406
BssECI CCNNGG 4 cut(s) 237, 643, 946, 1041
BssMI GATC 6 cut(s) 25, 49, 451, 687, 819, 939
BssNAI GTATAC 3 cut(s) 176, 353, 631
BssT1I CCWWGG 3 cut(s) 237, 643, 1041
Bst1107I GTATAC 3 cut(s) 176, 353, 631
Bst4CI ACNGT 3 cut(s) 1109, 1158, 1348
BstAFI CTTAAG 1 cut(s) 29
BstC8I GCNNGC 2 cut(s) 967, 1365
BstDEI CTNAG 4 cut(s) 552, 782, 826, 895
BstDSI CCRYGG 2 cut(s) 237, 1041
BstF5I GGATG 1 cut(s) 1465
BstKTI GATC 6 cut(s) 28, 52, 454, 690, 822, 942
BstMBI GATC 6 cut(s) 25, 49, 451, 687, 819, 939
BstMWI GCNNNNNNNGC 4 cut(s) 239, 607, 665, 1019
BstNSI RCATGY 2 cut(s) 924, 1395
BstSLI GKGCMC 2 cut(s) 928, 1440
BstV1I GCAGC 5 cut(s) 136, 454, 457, 974, 1240
BstV2I GAAGAC 1 cut(s) 860
BstX2I RGATCY 1 cut(s) 451
BstXI CCANNNNNNTGG 1 cut(s) 323
BstYI RGATCY 1 cut(s) 451
BstZ17I GTATAC 3 cut(s) 176, 353, 631
BsuRI GGCC 5 cut(s) 142, 242, 315, 416, 767
BtgI CCRYGG 2 cut(s) 237, 1041
BtgZI GCGATG 1 cut(s) 661
BtsCI GGATG 1 cut(s) 1465
BtsIMutI CAGTG 1 cut(s) 926
BveI ACCTGC 1 cut(s) 11
Cac8I GCNNGC 2 cut(s) 967, 1365
CaiI CAGNNNCTG 2 cut(s) 263, 590
CciI TCATGA 1 cut(s) 1077
Cfr13I GGNCC 3 cut(s) 140, 414, 853
DdeI CTNAG 4 cut(s) 552, 782, 826, 895
DpnI GATC 6 cut(s) 27, 51, 453, 689, 821, 941
DpnII GATC 6 cut(s) 25, 49, 451, 687, 819, 939
DrdI GACNNNNNNGTC 1 cut(s) 1014
DseDI GACNNNNNNGTC 1 cut(s) 1014
EaeI YGGCCR 2 cut(s) 240, 313
Eco130I CCWWGG 3 cut(s) 237, 643, 1041
Eco147I AGGCCT 1 cut(s) 767
Eco47I GGWCC 1 cut(s) 853
Eco57I CTGAAG 3 cut(s) 240, 792, 1074
Eco88I CYCGRG 1 cut(s) 93
EcoO109I RGGNCCY 1 cut(s) 140
EcoRI GAATTC 2 cut(s) 777, 1188
EcoT14I CCWWGG 3 cut(s) 237, 643, 1041
EcoT22I ATGCAT 1 cut(s) 697
ErhI CCWWGG 3 cut(s) 237, 643, 1041
FalI AAGNNNNNCTT 2 cut(s) 752, 784
FauNDI CATATG 3 cut(s) 342, 357, 1025
FbaI TGATCA 1 cut(s) 819
FblI GTMKAC 3 cut(s) 175, 352, 630
Fnu4HI GCNGC 7 cut(s) 125, 468, 471, 660, 963, 1229, 1464
Fsp4HI GCNGC 7 cut(s) 125, 468, 471, 660, 963, 1229, 1464
FspBI CTAG 1 cut(s) 1010
GluI GCNGC 7 cut(s) 125, 468, 471, 660, 963, 1229, 1464
GsaI CCCAGC 2 cut(s) 477, 999
GsuI CTGGAG 1 cut(s) 1164
HaeIII GGCC 5 cut(s) 142, 242, 315, 416, 767
HindIII AAGCTT 2 cut(s) 884, 1422
HinfI GANTC 3 cut(s) 540, 720, 753
HphI GGTGA 1 cut(s) 35
Hpy166II GTNNAC 5 cut(s) 176, 353, 631, 926, 1438
Hpy188I TCNGA 5 cut(s) 212, 555, 719, 950, 1429
Hpy188III TCNNGA 7 cut(s) 53, 68, 434, 449, 455, 537, 1078
Hpy8I GTNNAC 5 cut(s) 176, 353, 631, 926, 1438
HpyAV CCTTC 4 cut(s) 533, 816, 1049, 1318
HpyCH4III ACNGT 3 cut(s) 1109, 1158, 1348
HpyF10VI GCNNNNNNNGC 4 cut(s) 239, 607, 665, 1019
HpyF3I CTNAG 4 cut(s) 552, 782, 826, 895
Ksp22I TGATCA 1 cut(s) 819
Kzo9I GATC 6 cut(s) 25, 49, 451, 687, 819, 939
LmnI GCTCC 2 cut(s) 326, 1259
Lsp1109I GCAGC 5 cut(s) 136, 454, 457, 974, 1240
LweI GCATC 2 cut(s) 684, 1450
MaeI CTAG 1 cut(s) 1010
MaeIII GTNAC 9 cut(s) 33, 259, 488, 577, 1030, 1048, 1109, 1387, 1453
MalI GATC 6 cut(s) 27, 51, 453, 689, 821, 941
MboI GATC 6 cut(s) 25, 49, 451, 687, 819, 939
MboII GAAGA 5 cut(s) 23, 130, 860, 863, 1429
MflI RGATCY 1 cut(s) 451
MhlI GDGCHC 2 cut(s) 928, 1440
MlsI TGGCCA 2 cut(s) 242, 315
MluCI AATT 8 cut(s) 157, 437, 479, 777, 986, 1188, 1290, 1341
MluNI TGGCCA 2 cut(s) 242, 315
Mox20I TGGCCA 2 cut(s) 242, 315
Mph1103I ATGCAT 1 cut(s) 697
MscI TGGCCA 2 cut(s) 242, 315
MseI TTAA 4 cut(s) 30, 792, 915, 1251
Msp20I TGGCCA 2 cut(s) 242, 315
MspA1I CMGCKG 3 cut(s) 88, 127, 812
MspCI CTTAAG 1 cut(s) 29
Mva1269I GAATGC 3 cut(s) 10, 393, 1278
MwoI GCNNNNNNNGC 4 cut(s) 239, 607, 665, 1019
NcoI CCATGG 2 cut(s) 237, 1041
NdeI CATATG 3 cut(s) 342, 357, 1025
NdeII GATC 6 cut(s) 25, 49, 451, 687, 819, 939
NlaIV GGNNCC 1 cut(s) 567
NmuCI GTSAC 3 cut(s) 33, 1387, 1453
NsiI ATGCAT 1 cut(s) 697
NspI RCATGY 2 cut(s) 924, 1395
PagI TCATGA 1 cut(s) 1077
PaqCI CACCTGC 1 cut(s) 11
PceI AGGCCT 1 cut(s) 767
PciI ACATGT 1 cut(s) 920
PcsI WCGNNNNNNNCGW 1 cut(s) 1012
PctI GAATGC 3 cut(s) 10, 393, 1278
PfeI GAWTC 3 cut(s) 540, 720, 753
PkrI GCNGC 7 cut(s) 126, 469, 472, 661, 964, 1230, 1465
PscI ACATGT 1 cut(s) 920
PspFI CCCAGC 2 cut(s) 473, 995
PspN4I GGNNCC 1 cut(s) 567
PspPI GGNCC 3 cut(s) 140, 414, 853
PstNI CAGNNNCTG 2 cut(s) 263, 590
PsuI RGATCY 1 cut(s) 451
PvuII CAGCTG 3 cut(s) 88, 127, 812
SaqAI TTAA 4 cut(s) 30, 792, 915, 1251
SatI GCNGC 7 cut(s) 125, 468, 471, 660, 963, 1229, 1464
Sau3AI GATC 6 cut(s) 25, 49, 451, 687, 819, 939
Sau96I GGNCC 3 cut(s) 140, 414, 853
SduI GDGCHC 2 cut(s) 928, 1440
SfaNI GCATC 2 cut(s) 684, 1450
SinI GGWCC 1 cut(s) 853
SmlI CTYRAG 1 cut(s) 29
SmoI CTYRAG 1 cut(s) 29
Sse9I AATT 8 cut(s) 157, 437, 479, 777, 986, 1188, 1290, 1341
SseBI AGGCCT 1 cut(s) 767
SsiI CCGC 1 cut(s) 659
SspI AATATT 1 cut(s) 1152
SspMI CTAG 1 cut(s) 1010
StuI AGGCCT 1 cut(s) 767
StyI CCWWGG 3 cut(s) 237, 643, 1041
TaaI ACNGT 3 cut(s) 1109, 1158, 1348
TaqI TCGA 1 cut(s) 1090
TasI AATT 8 cut(s) 157, 437, 479, 777, 986, 1188, 1290, 1341
TauI GCSGC 1 cut(s) 662
TfiI GAWTC 3 cut(s) 540, 720, 753
Tru1I TTAA 4 cut(s) 30, 792, 915, 1251
Tru9I TTAA 4 cut(s) 30, 792, 915, 1251
TscAI CASTG 1 cut(s) 933
TseFI GTSAC 3 cut(s) 33, 1387, 1453
TseI GCWGC 6 cut(s) 124, 467, 470, 962, 1228, 1463
Tsp45I GTSAC 3 cut(s) 33, 1387, 1453
TspDTI ATGAA 4 cut(s) 17, 237, 418, 999
TspGWI ACGGA 2 cut(s) 789, 1472
TspRI CASTG 1 cut(s) 933
Vha464I CTTAAG 1 cut(s) 29
VneI GTGCAC 2 cut(s) 924, 1436
VpaK11BI GGWCC 1 cut(s) 853
XapI RAATTY 5 cut(s) 157, 437, 479, 777, 1188
XceI RCATGY 2 cut(s) 924, 1395
XcmI CCANNNNNNNNNTGG 1 cut(s) 1181
XmiI GTMKAC 3 cut(s) 175, 352, 630
XspI CTAG 1 cut(s) 1010
Zsp2I ATGCAT 1 cut(s) 697
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.