Prupe.1G090000_v2.0.a1

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Reverse (-)
6775489 .. 6778208
2720 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G090000.1_v2.0.a1.CDS.3

Sequence Viewer

Length: 1473 bp
ATGGATTTCGAAGAACAAGCAGCTGGTCTCGAGTCAGCCTTGATTCAAGTTCCCCAAGAACAATCATTACTATCAAGAAAACAAGTACCGGTCAAAGATGAGATTGTGGAGGAAGTGAAGAAGCAGCTGTTGTTAGCAGGGCCACTTGTTGCATCAAATTTTTTGCTATTTGGCATGCAGCTTATTTCAGTCATGTATGTTGGTCATGTTGGAGAGCTGGCCCTCGCAGGTGCTTCCATGGCCACTTCATTTGCTTCGGTGACTGGTTTGAGCTTGACGAGAGGAATGGGTAGCGCGTTAGACACGTTCTGTGGCCAGTCTTACGGAGCAAAACAGTATCATATGCTTGGCATACACATGCAGAGGGCAATGCTTGTTCTTCTTCTGGTAAACATTCCCCTTGCATTTGTATGGGCCAATACTGGCCACATTCTTGAATTCTTGGGTCAAGATCCAGAAATATCAGCTGCTGCTGGCAACTATGCTTGTTTCTTGATACCTAGCCTTTTCACTTACGCAATCCTAGAATCGCATGCCAGATTCCTGCAAGCTCAAAACAATGTGGTTCCTTTGATTGTTAGCACAGGAGTTGCAACGCTTGTGCACTTGCTTAACTGTTGGGTTCTGGTATACAAGACCAGCCTTGGATACAGAGGCGCTGCTTTGGCAACCTCCGTCACGTATTCAATCAATACATTGTTATTGGCTCTTTATGTCAGAGTGTCTCCCTCTTGTAAGCTCACATGGACTGGATTCTCAAAGGAGGCCTTTCATGGAATTCCCAATTTTTTAAAACTATCAATTCCTTCAGCTGTAATGGTCAGCTTAGAAGTCTGGTCGTTCGAAATGATAGTGCTCTTATCTGGTTTTCTTCCTAATCCAAAGCTTGAAACCTCAGCCCTCTCAATCAGCTTTAACACATGTTTAATGGTCTACATGATTCCTCTGGCTTTCAGTGGTACAGTAAGCACAAGAGTTTCAAATCAATTGGGAGCTGGGCAACCACGAATGGTGTGTATAGCAATATGCGTTGCACTATCCATTGTTGTTACTGAAGGCATTGTGGCTGCTGCTGTCATGATATTGGCTCGAAACGTTTGGGGTTACTGTTACAGCAGTGAAAAAGAGGTTGTGAAGTATGTTGGAGAAATGTTGATTTTTGTCGCCCTATCCCACTTTTTTGATGGACCTCAATCTGTTCTTTCAGGTGTCATAAGAGGAAGTGGGCAGCAAAAGATTGGGGTATATGTTAATCTGGGAGCCTATTATCTTATAGGAATTCCTACTGCAGTCTTATTAGCTTTTGTGCAGCACATTGGAGGGAAGGGTCTTTGGATTGGAATTATTATGGCGCTATTTGTGCAAGCACTATCTCTTGCAATCATAGTCATATGCACAGATTGGGAGAAAGAAGTGAAGAAAGCTTCTGATAGCGTGTTCAACAGAGTGACCGTGGCTGAGTCGTCAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MatE

Protein Analysis

491

Amino Acids

52.83

Weight (kDa)

6.75

Isoelectric Point (pI)

26.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 218
Acc36I ACCTGC 1 cut(s) 218
AccI GTMKAC 2 cut(s) 630, 933
AccII CGCG 1 cut(s) 296
AclI AACGTT 1 cut(s) 1095
AclWI GGATC 1 cut(s) 446
AcoI YGGCCR 3 cut(s) 240, 313, 424
AcsI RAATTY 4 cut(s) 157, 437, 777, 1278
AcuI CTGAAG 2 cut(s) 792, 1074
AfaI GTAC 2 cut(s) 87, 961
AflIII ACRYGT 2 cut(s) 303, 920
AgeI ACCGGT 1 cut(s) 88
AgsI TTSAA 6 cut(s) 47, 437, 687, 890, 981, 1441
Alw21I GWGCWC 2 cut(s) 606, 858
Alw26I GTCTC 2 cut(s) 32, 729
Alw44I GTGCAC 1 cut(s) 602
AlwI GGATC 1 cut(s) 446
AlwNI CAGNNNCTG 1 cut(s) 470
Ama87I CYCGRG 1 cut(s) 29
AoxI GGCC 7 cut(s) 140, 219, 240, 313, 414, 424, 765
ApaLI GTGCAC 1 cut(s) 602
ApoI RAATTY 4 cut(s) 157, 437, 777, 1278
AsiGI ACCGGT 1 cut(s) 88
AspLEI GCGC 3 cut(s) 296, 659, 1354
AspS9I GGNCC 4 cut(s) 140, 220, 414, 1187
AsuHPI GGTGA 1 cut(s) 271
AsuII TTCGAA 2 cut(s) 9, 843
AvaI CYCGRG 1 cut(s) 29
AvaII GGWCC 1 cut(s) 1187
BaeGI GKGCMC 1 cut(s) 606
BalI TGGCCA 3 cut(s) 242, 315, 426
Bbv12I GWGCWC 2 cut(s) 606, 858
BbvCI CCTCAGC 1 cut(s) 895
BccI CCATC 1 cut(s) 1178
BciVI GTATCC 1 cut(s) 641
BcoDI GTCTC 2 cut(s) 32, 729
BfaI CTAG 2 cut(s) 501, 524
BfmI CTRYAG 1 cut(s) 1287
BfoI RGCGCY 2 cut(s) 660, 1355
BfuAI ACCTGC 1 cut(s) 218
BfuI GTATCC 1 cut(s) 641
Bme18I GGWCC 1 cut(s) 1187
BmeT110I CYCGRG 1 cut(s) 29
BmgT120I GGNCC 4 cut(s) 140, 220, 414, 1187
BmiI GGNNCC 2 cut(s) 567, 1261
BmsI GCATC 1 cut(s) 161
Bpu10I CCTNAGC 1 cut(s) 895
Bpu14I TTCGAA 2 cut(s) 9, 843
BsaAI YACGTR 1 cut(s) 681
BsaI GGTCTC 1 cut(s) 32
BsaJI CCNNGG 3 cut(s) 237, 643, 1452
BsaWI WCCGGW 1 cut(s) 88
Bse118I RCCGGY 1 cut(s) 88
Bse1I ACTGG 4 cut(s) 268, 316, 427, 754
Bse3DI GCAATG 1 cut(s) 375
BseDI CCNNGG 3 cut(s) 237, 643, 1452
BseMI GCAATG 1 cut(s) 375
BseMII CTCAG 2 cut(s) 909, 1449
BseNI ACTGG 4 cut(s) 268, 316, 427, 754
BseSI GKGCMC 1 cut(s) 606
BseYI CCCAGC 1 cut(s) 995
BsgI GTGCAG 1 cut(s) 1328
Bsh1236I CGCG 1 cut(s) 296
BshFI GGCC 7 cut(s) 142, 221, 242, 315, 416, 426, 767
BshTI ACCGGT 1 cut(s) 88
BsiHKAI GWGCWC 2 cut(s) 606, 858
BsiHKCI CYCGRG 1 cut(s) 29
BsiSI CCGG 1 cut(s) 89
BsmAI GTCTC 2 cut(s) 32, 729
BsnI GGCC 7 cut(s) 142, 221, 242, 315, 416, 426, 767
Bso31I GGTCTC 1 cut(s) 32
BsoBI CYCGRG 1 cut(s) 29
Bsp119I TTCGAA 2 cut(s) 9, 843
Bsp1286I GDGCHC 2 cut(s) 606, 858
Bsp143I GATC 1 cut(s) 451
Bsp19I CCATGG 1 cut(s) 237
BspANI GGCC 7 cut(s) 142, 221, 242, 315, 416, 426, 767
BspCNI CTCAG 2 cut(s) 908, 1450
BspFNI CGCG 1 cut(s) 296
BspHI TCATGA 1 cut(s) 1077
BspLI GGNNCC 2 cut(s) 567, 1261
BspMAI CTGCAG 1 cut(s) 1291
BspMI ACCTGC 1 cut(s) 218
BspPI GGATC 1 cut(s) 446
BspT104I TTCGAA 2 cut(s) 9, 843
BspTNI GGTCTC 1 cut(s) 32
BsrDI GCAATG 1 cut(s) 375
BsrFI RCCGGY 1 cut(s) 88
BsrI ACTGG 4 cut(s) 268, 316, 427, 754
BssAI RCCGGY 1 cut(s) 88
BssECI CCNNGG 3 cut(s) 237, 643, 1452
BssMI GATC 1 cut(s) 451
BssNAI GTATAC 1 cut(s) 631
BssT1I CCWWGG 2 cut(s) 237, 643
Bst1107I GTATAC 1 cut(s) 631
Bst4CI ACNGT 5 cut(s) 336, 617, 964, 1109, 1453
BstBAI YACGTR 1 cut(s) 681
BstBI TTCGAA 2 cut(s) 9, 843
BstC8I GCNNGC 6 cut(s) 176, 219, 475, 534, 549, 1365
BstDEI CTNAG 3 cut(s) 826, 895, 1458
BstDSI CCRYGG 2 cut(s) 237, 1452
BstFNI CGCG 1 cut(s) 296
BstH2I RGCGCY 2 cut(s) 660, 1355
BstHHI GCGC 3 cut(s) 296, 659, 1354
BstKTI GATC 1 cut(s) 454
BstMAI GTCTC 2 cut(s) 32, 729
BstMBI GATC 1 cut(s) 451
BstMWI GCNNNNNNNGC 3 cut(s) 239, 665, 1360
BstNSI RCATGY 4 cut(s) 178, 361, 536, 924
BstSFI CTRYAG 1 cut(s) 1287
BstSLI GKGCMC 1 cut(s) 606
BstUI CGCG 1 cut(s) 296
BstX2I RGATCY 1 cut(s) 451
BstYI RGATCY 1 cut(s) 451
BstZ17I GTATAC 1 cut(s) 631
BsuI GTATCC 1 cut(s) 641
BsuRI GGCC 7 cut(s) 142, 221, 242, 315, 416, 426, 767
BtgI CCRYGG 2 cut(s) 237, 1452
BtsI GCAGTG 1 cut(s) 1123
BtsIMutI CAGTG 2 cut(s) 961, 1123
BveI ACCTGC 1 cut(s) 218
Cac8I GCNNGC 6 cut(s) 176, 219, 475, 534, 549, 1365
CaiI CAGNNNCTG 1 cut(s) 470
CciI TCATGA 1 cut(s) 1077
CfoI GCGC 3 cut(s) 296, 659, 1354
Cfr10I RCCGGY 1 cut(s) 88
Cfr13I GGNCC 4 cut(s) 140, 220, 414, 1187
Csp6I GTAC 2 cut(s) 86, 960
CspAI ACCGGT 1 cut(s) 88
CspCI CAANNNNNGTGG 2 cut(s) 232, 267
CviQI GTAC 2 cut(s) 86, 960
DdeI CTNAG 3 cut(s) 826, 895, 1458
DpnI GATC 1 cut(s) 453
DpnII GATC 1 cut(s) 451
DraI TTTAAA 1 cut(s) 792
EaeI YGGCCR 3 cut(s) 240, 313, 424
Eco130I CCWWGG 2 cut(s) 237, 643
Eco147I AGGCCT 1 cut(s) 767
Eco31I GGTCTC 1 cut(s) 32
Eco47I GGWCC 1 cut(s) 1187
Eco57I CTGAAG 2 cut(s) 792, 1074
Eco88I CYCGRG 1 cut(s) 29
EcoRI GAATTC 3 cut(s) 437, 777, 1278
EcoT14I CCWWGG 2 cut(s) 237, 643
ErhI CCWWGG 2 cut(s) 237, 643
FalI AAGNNNNNCTT 2 cut(s) 752, 784
FauNDI CATATG 2 cut(s) 342, 1391
FblI GTMKAC 2 cut(s) 630, 933
FspBI CTAG 2 cut(s) 501, 524
GlaI GCGC 3 cut(s) 295, 658, 1353
GsaI CCCAGC 1 cut(s) 999
HaeII RGCGCY 2 cut(s) 660, 1355
HaeIII GGCC 7 cut(s) 142, 221, 242, 315, 416, 426, 767
HapII CCGG 1 cut(s) 89
HhaI GCGC 3 cut(s) 296, 659, 1354
Hin6I GCGC 3 cut(s) 294, 657, 1352
HinP1I GCGC 3 cut(s) 294, 657, 1352
HindIII AAGCTT 2 cut(s) 884, 1422
HinfI GANTC 7 cut(s) 32, 43, 527, 540, 753, 940, 1460
HpaII CCGG 1 cut(s) 89
HphI GGTGA 1 cut(s) 271
Hpy166II GTNNAC 4 cut(s) 391, 604, 631, 934
Hpy188I TCNGA 2 cut(s) 719, 1429
Hpy188III TCNNGA 7 cut(s) 29, 75, 434, 449, 455, 493, 1078
Hpy8I GTNNAC 4 cut(s) 391, 604, 631, 934
HpyAV CCTTC 3 cut(s) 816, 1049, 1318
HpyCH4III ACNGT 5 cut(s) 336, 617, 964, 1109, 1453
HpyCH4IV ACGT 3 cut(s) 305, 680, 1095
HpyF10VI GCNNNNNNNGC 3 cut(s) 239, 665, 1360
HpyF3I CTNAG 3 cut(s) 826, 895, 1458
HpySE526I ACGT 3 cut(s) 305, 680, 1095
HspAI GCGC 3 cut(s) 294, 657, 1352
Kzo9I GATC 1 cut(s) 451
LmnI GCTCC 3 cut(s) 326, 992, 1259
LweI GCATC 1 cut(s) 161
MaeI CTAG 2 cut(s) 501, 524
MaeII ACGT 3 cut(s) 305, 680, 1095
MaeIII GTNAC 6 cut(s) 259, 676, 1048, 1103, 1109, 1447
MalI GATC 1 cut(s) 453
MboI GATC 1 cut(s) 451
MboII GAAGA 6 cut(s) 23, 130, 371, 374, 863, 1429
MfeI CAATTG 1 cut(s) 986
MflI RGATCY 1 cut(s) 451
MhlI GDGCHC 2 cut(s) 606, 858
MlsI TGGCCA 3 cut(s) 242, 315, 426
MluCI AATT 8 cut(s) 157, 437, 777, 784, 801, 986, 1278, 1341
MluNI TGGCCA 3 cut(s) 242, 315, 426
MlyI GAGTC 2 cut(s) 41, 1469
MmeI TCCRAC 2 cut(s) 190, 1123
Mox20I TGGCCA 3 cut(s) 242, 315, 426
MscI TGGCCA 3 cut(s) 242, 315, 426
MseI TTAA 5 cut(s) 612, 791, 915, 926, 1251
MslI CAYNNNNRTG 2 cut(s) 356, 409
Msp20I TGGCCA 3 cut(s) 242, 315, 426
MspA1I CMGCKG 4 cut(s) 23, 127, 467, 812
MspI CCGG 1 cut(s) 89
MunI CAATTG 1 cut(s) 986
MvnI CGCG 1 cut(s) 296
MwoI GCNNNNNNNGC 3 cut(s) 239, 665, 1360
NcoI CCATGG 1 cut(s) 237
NdeI CATATG 2 cut(s) 342, 1391
NdeII GATC 1 cut(s) 451
NlaIV GGNNCC 2 cut(s) 567, 1261
NmuCI GTSAC 3 cut(s) 259, 676, 1447
NspI RCATGY 4 cut(s) 178, 361, 536, 924
NspV TTCGAA 2 cut(s) 9, 843
PaeI GCATGC 2 cut(s) 178, 536
PaeR7I CTCGAG 1 cut(s) 29
PagI TCATGA 1 cut(s) 1077
PaqCI CACCTGC 1 cut(s) 218
PceI AGGCCT 1 cut(s) 767
PciI ACATGT 1 cut(s) 920
PfeI GAWTC 5 cut(s) 43, 527, 540, 753, 940
PinAI ACCGGT 1 cut(s) 88
PleI GAGTC 2 cut(s) 40, 1468
PpsI GAGTC 2 cut(s) 40, 1468
Ppu21I YACGTR 1 cut(s) 681
PscI ACATGT 1 cut(s) 920
Psp1406I AACGTT 1 cut(s) 1095
PspFI CCCAGC 1 cut(s) 995
PspN4I GGNNCC 2 cut(s) 567, 1261
PspPI GGNCC 4 cut(s) 140, 220, 414, 1187
PsrI GAACNNNNNNTAC 2 cut(s) 51, 83
PstI CTGCAG 1 cut(s) 1291
PstNI CAGNNNCTG 1 cut(s) 470
PsuI RGATCY 1 cut(s) 451
PvuII CAGCTG 4 cut(s) 23, 127, 467, 812
RsaI GTAC 2 cut(s) 87, 961
RsaNI GTAC 2 cut(s) 86, 960
RseI CAYNNNNRTG 2 cut(s) 356, 409
SaqAI TTAA 5 cut(s) 612, 791, 915, 926, 1251
Sau3AI GATC 1 cut(s) 451
Sau96I GGNCC 4 cut(s) 140, 220, 414, 1187
SchI GAGTC 2 cut(s) 41, 1469
SduI GDGCHC 2 cut(s) 606, 858
SfaNI GCATC 1 cut(s) 161
SfcI CTRYAG 1 cut(s) 1287
Sfr274I CTCGAG 1 cut(s) 29
SfuI TTCGAA 2 cut(s) 9, 843
SinI GGWCC 1 cut(s) 1187
SlaI CTCGAG 1 cut(s) 29
SmiMI CAYNNNNRTG 2 cut(s) 356, 409
SmlI CTYRAG 1 cut(s) 29
SmoI CTYRAG 1 cut(s) 29
SphI GCATGC 2 cut(s) 178, 536
Sse9I AATT 8 cut(s) 157, 437, 777, 784, 801, 986, 1278, 1341
SseBI AGGCCT 1 cut(s) 767
SspMI CTAG 2 cut(s) 501, 524
StuI AGGCCT 1 cut(s) 767
StyI CCWWGG 2 cut(s) 237, 643
TaaI ACNGT 5 cut(s) 336, 617, 964, 1109, 1453
TaiI ACGT 3 cut(s) 308, 683, 1098
TaqI TCGA 4 cut(s) 9, 30, 843, 1090
TasI AATT 8 cut(s) 157, 437, 777, 784, 801, 986, 1278, 1341
TfiI GAWTC 5 cut(s) 43, 527, 540, 753, 940
Tru1I TTAA 5 cut(s) 612, 791, 915, 926, 1251
Tru9I TTAA 5 cut(s) 612, 791, 915, 926, 1251
TscAI CASTG 2 cut(s) 961, 1123
TseFI GTSAC 3 cut(s) 259, 676, 1447
Tsp45I GTSAC 3 cut(s) 259, 676, 1447
TspDTI ATGAA 2 cut(s) 237, 761
TspGWI ACGGA 2 cut(s) 339, 664
TspRI CASTG 2 cut(s) 961, 1123
VneI GTGCAC 1 cut(s) 602
VpaK11BI GGWCC 1 cut(s) 1187
XapI RAATTY 4 cut(s) 157, 437, 777, 1278
XceI RCATGY 4 cut(s) 178, 361, 536, 924
XcmI CCANNNNNNNNNTGG 1 cut(s) 1181
XhoI CTCGAG 1 cut(s) 29
XmiI GTMKAC 2 cut(s) 630, 933
XspI CTAG 2 cut(s) 501, 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.