Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

6817544 .. 6818418

Gene Structure 875 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G090600.1_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGTCCTCCATTTTTCATGTTGATAAAGAAACTGCATACATTATACATGGGATAACGCTAGGCTTACACAGAGGCGAACGTATTAAGGCACAAGGAGGTGCTGCACCTCCTCTCGCTAGAAAAACCATTGTAGGTGTTTCAAATTGCCCATTTGCTCAACAGGTATACAGATTACCTTATTTCCATTTTCAACATTTAAGTAAATGTCTTTGTCCTTTTACTTTTATTTATTTTTATATTACTCCATTTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0003006 GO:0003674 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005628 GO:0005634 GO:0006629 GO:0006644 GO:0006650 GO:0006656 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0008525 GO:0008526 GO:0008610 GO:0008654 GO:0009058 GO:0009653 GO:0009791 GO:0009908 GO:0009987 GO:0010876 GO:0010927 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016192 GO:0019637 GO:0019953 GO:0022402 GO:0022413 GO:0022414 GO:0022607 GO:0030154 GO:0030427 GO:0030435 GO:0030437 GO:0031321 GO:0031322 GO:0032153 GO:0032501 GO:0032502 GO:0032505 GO:0032989 GO:0033036 GO:0034293 GO:0035838 GO:0042763 GO:0042764 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0043935 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044464 GO:0044703 GO:0045017 GO:0046470 GO:0046474 GO:0046486 GO:0048193 GO:0048367 GO:0048468 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051286 GO:0051321 GO:0051704 GO:0060187 GO:0061024 GO:0061458 GO:0071702 GO:0071704 GO:0071840 GO:0090407 GO:0090567 GO:0097164 GO:0120009 GO:0120010 GO:1901564 GO:1901566 GO:1901576 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

85

Amino Acids

9.56

Weight (kDa)

9.41

Isoelectric Point (pI)

32.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	165
AgsI	TTSAA	2 cut(s)	141, 191
ApeKI	GCWGC	1 cut(s)	101
BbvI	GCAGC	1 cut(s)	88
BfaI	CTAG	2 cut(s)	59, 117
BisI	GCNGC	1 cut(s)	102
BlsI	GCNGC	1 cut(s)	103
BseRI	GAGGAG	1 cut(s)	99
BseXI	GCAGC	1 cut(s)	88
BsgI	GTGCAG	1 cut(s)	87
BssNAI	GTATAC	1 cut(s)	166
Bst1107I	GTATAC	1 cut(s)	166
BstV1I	GCAGC	1 cut(s)	88
BstZ17I	GTATAC	1 cut(s)	166
CviAII	CATG	2 cut(s)	17, 47
CviJI	RGCY	1 cut(s)	63
CviKI_1	RGCY	1 cut(s)	63
FaeI	CATG	2 cut(s)	20, 50
FaiI	YATR	6 cut(s)	18, 37, 44, 48, 166, 237
FatI	CATG	2 cut(s)	16, 46
FblI	GTMKAC	1 cut(s)	165
Fnu4HI	GCNGC	1 cut(s)	102
Fsp4HI	GCNGC	1 cut(s)	102
FspBI	CTAG	2 cut(s)	59, 117
GluI	GCNGC	1 cut(s)	102
Hin1II	CATG	2 cut(s)	20, 50
Hpy166II	GTNNAC	1 cut(s)	166
Hpy8I	GTNNAC	1 cut(s)	166
HpyCH4IV	ACGT	1 cut(s)	79
HpyCH4V	TGCA	2 cut(s)	35, 104
HpySE526I	ACGT	1 cut(s)	79
Hsp92II	CATG	2 cut(s)	20, 50
LpnPI	CCDG	1 cut(s)	146
Lsp1109I	GCAGC	1 cut(s)	88
MaeI	CTAG	2 cut(s)	59, 117
MaeII	ACGT	1 cut(s)	79
MluCI	AATT	1 cut(s)	142
MnlI	CCTC	5 cut(s)	16, 65, 89, 117, 120
MseI	TTAA	3 cut(s)	84, 197, 253
NlaIII	CATG	2 cut(s)	20, 50
PkrI	GCNGC	1 cut(s)	103
SaqAI	TTAA	3 cut(s)	84, 197, 253
SatI	GCNGC	1 cut(s)	102
SetI	ASST	6 cut(s)	82, 100, 109, 136, 165, 178
SgeI	CNNG	7 cut(s)	29, 59, 71, 104, 125, 129, 173
Sse9I	AATT	1 cut(s)	142
SspMI	CTAG	2 cut(s)	59, 117
TaiI	ACGT	1 cut(s)	82
TasI	AATT	1 cut(s)	142
Tru1I	TTAA	3 cut(s)	84, 197, 253
Tru9I	TTAA	3 cut(s)	84, 197, 253
TseI	GCWGC	1 cut(s)	101
TspDTI	ATGAA	1 cut(s)	5
XmiI	GTMKAC	1 cut(s)	165
XspI	CTAG	2 cut(s)	59, 117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.