Prupe.1G090800_v2.0.a1

Major allergen Pru

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Forward (+)
6823578 .. 6824417
840 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G090800.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 456 bp
ATGATTTCTCATTCAAAATCGCTCCGTCTCCATGTTGTGAAGCACCGGATCGACGGGCTTGACAAAGATAACTTTGTGTACAGCTACACTTTGGTTGAAGGAGATGCTCTTTCAGACAAGGTTGAGAAAATCAGTTATGAGATTAAGTTGGTGGCATCTGCTGATGGAGGTTCCATCATAAAGAGCGCGATAGCCAATTCATCTAATGACTTTGCTCTACACCAAATTGAGATGTTGGCCGCAACAGAGCAAGCTTTCTGGAACTGCTGTTGGAGTGGCGAAGTAGGCCCCATCACCGGATCCTTGCTAAGCTGCAAGCAGAGCCAGGGAAGTAAGCCTGTGATGTGCATCAAGAGTCTTGTGAGGCAGAAAACGGCTCGAGTCCAAGAGGCAGATCACCCAAGGCTAGTTCTAATTCTAGGGCGACTTCGAGGTTTGGAGTCCATGGTTCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

152

Amino Acids

16.64

Weight (kDa)

8.71

Isoelectric Point (pI)

25.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 188
AciI CCGC 1 cut(s) 240
AclWI GGATC 3 cut(s) 56, 294, 307
AcoI YGGCCR 1 cut(s) 237
AfaI GTAC 1 cut(s) 80
AfiI CCNNNNNNNGG 2 cut(s) 296, 450
AgsI TTSAA 2 cut(s) 15, 98
AjnI CCWGG 1 cut(s) 324
AluBI AGCT 3 cut(s) 84, 254, 312
AluI AGCT 3 cut(s) 84, 254, 312
Alw26I GTCTC 1 cut(s) 32
AlwI GGATC 3 cut(s) 56, 294, 307
Ama87I CYCGRG 1 cut(s) 378
AoxI GGCC 2 cut(s) 237, 286
ApeKI GCWGC 1 cut(s) 312
AspLEI GCGC 1 cut(s) 188
AspS9I GGNCC 1 cut(s) 287
AsuHPI GGTGA 2 cut(s) 286, 389
AvaI CYCGRG 1 cut(s) 378
BamHI GGATCC 1 cut(s) 299
BbvI GCAGC 1 cut(s) 299
BccI CCATC 3 cut(s) 158, 182, 299
BceAI ACGGC 1 cut(s) 390
BciT130I CCWGG 1 cut(s) 326
BcoDI GTCTC 1 cut(s) 32
BfaI CTAG 2 cut(s) 407, 419
BisI GCNGC 2 cut(s) 240, 313
BlpI GCTNAGC 1 cut(s) 308
BlsI GCNGC 2 cut(s) 241, 314
Bme1390I CCNGG 1 cut(s) 326
BmeT110I CYCGRG 1 cut(s) 378
BmgT120I GGNCC 1 cut(s) 287
BmiI GGNNCC 3 cut(s) 172, 289, 301
BmrFI CCNGG 1 cut(s) 326
BmsI GCATC 3 cut(s) 94, 164, 357
Bpu1102I GCTNAGC 1 cut(s) 308
BsaBI GATNNNNATC 1 cut(s) 347
BsaJI CCNNGG 3 cut(s) 325, 401, 444
BsaWI WCCGGW 2 cut(s) 45, 296
Bsc4I CCNNNNNNNGG 2 cut(s) 296, 450
Bse8I GATNNNNATC 1 cut(s) 347
BseBI CCWGG 1 cut(s) 326
BseDI CCNNGG 3 cut(s) 325, 401, 444
BseJI GATNNNNATC 1 cut(s) 347
BseLI CCNNNNNNNGG 2 cut(s) 296, 450
BseXI GCAGC 1 cut(s) 299
Bsh1236I CGCG 1 cut(s) 188
BshFI GGCC 2 cut(s) 239, 288
BsiHKCI CYCGRG 1 cut(s) 378
BsiSI CCGG 2 cut(s) 46, 297
BslI CCNNNNNNNGG 2 cut(s) 296, 450
BsmAI GTCTC 1 cut(s) 32
BsmBI CGTCTC 1 cut(s) 32
BsnI GGCC 2 cut(s) 239, 288
BsoBI CYCGRG 1 cut(s) 378
Bsp1407I TGTACA 1 cut(s) 78
Bsp143I GATC 3 cut(s) 48, 299, 394
Bsp1720I GCTNAGC 1 cut(s) 308
Bsp19I CCATGG 1 cut(s) 444
BspACI CCGC 1 cut(s) 240
BspANI GGCC 2 cut(s) 239, 288
BspFNI CGCG 1 cut(s) 188
BspLI GGNNCC 3 cut(s) 172, 289, 301
BspPI GGATC 3 cut(s) 56, 294, 307
BsrGI TGTACA 1 cut(s) 78
BssECI CCNNGG 3 cut(s) 325, 401, 444
BssMI GATC 3 cut(s) 48, 299, 394
BssT1I CCWWGG 2 cut(s) 401, 444
Bst2UI CCWGG 1 cut(s) 326
BstAUI TGTACA 1 cut(s) 78
BstC8I GCNNGC 2 cut(s) 252, 317
BstDEI CTNAG 1 cut(s) 308
BstDSI CCRYGG 1 cut(s) 444
BstFNI CGCG 1 cut(s) 188
BstHHI GCGC 1 cut(s) 188
BstKTI GATC 3 cut(s) 51, 302, 397
BstMAI GTCTC 1 cut(s) 32
BstMBI GATC 3 cut(s) 48, 299, 394
BstMWI GCNNNNNNNGC 2 cut(s) 285, 321
BstNI CCWGG 1 cut(s) 326
BstSCI CCNGG 1 cut(s) 324
BstUI CGCG 1 cut(s) 188
BstV1I GCAGC 1 cut(s) 299
BstX2I RGATCY 1 cut(s) 299
BstYI RGATCY 1 cut(s) 299
BsuRI GGCC 2 cut(s) 239, 288
BtgI CCRYGG 1 cut(s) 444
Cac8I GCNNGC 2 cut(s) 252, 317
CfoI GCGC 1 cut(s) 188
Cfr13I GGNCC 1 cut(s) 287
Csp6I GTAC 1 cut(s) 79
CviAII CATG 2 cut(s) 32, 445
CviQI GTAC 1 cut(s) 79
DdeI CTNAG 1 cut(s) 308
DpnI GATC 3 cut(s) 50, 301, 396
DpnII GATC 3 cut(s) 48, 299, 394
EaeI YGGCCR 1 cut(s) 237
Eco130I CCWWGG 2 cut(s) 401, 444
Eco88I CYCGRG 1 cut(s) 378
EcoO109I RGGNCCY 1 cut(s) 287
EcoRII CCWGG 1 cut(s) 324
EcoT14I CCWWGG 2 cut(s) 401, 444
ErhI CCWWGG 2 cut(s) 401, 444
Esp3I CGTCTC 1 cut(s) 32
FaeI CATG 2 cut(s) 35, 448
FaiI YATR 4 cut(s) 33, 138, 179, 446
FatI CATG 2 cut(s) 31, 444
Fnu4HI GCNGC 2 cut(s) 240, 313
Fsp4HI GCNGC 2 cut(s) 240, 313
FspBI CTAG 2 cut(s) 407, 419
GlaI GCGC 1 cut(s) 187
GluI GCNGC 2 cut(s) 240, 313
HaeIII GGCC 2 cut(s) 239, 288
HapII CCGG 2 cut(s) 46, 297
HhaI GCGC 1 cut(s) 188
Hin1II CATG 2 cut(s) 35, 448
Hin6I GCGC 1 cut(s) 186
HinP1I GCGC 1 cut(s) 186
HindIII AAGCTT 1 cut(s) 252
HinfI GANTC 3 cut(s) 355, 381, 440
HpaII CCGG 2 cut(s) 46, 297
HphI GGTGA 2 cut(s) 286, 389
Hpy166II GTNNAC 1 cut(s) 79
Hpy188I TCNGA 1 cut(s) 115
Hpy188III TCNNGA 2 cut(s) 259, 352
Hpy8I GTNNAC 1 cut(s) 79
Hpy99I CGWCG 1 cut(s) 56
HpyAV CCTTC 1 cut(s) 92
HpyCH4V TGCA 2 cut(s) 315, 348
HpyF10VI GCNNNNNNNGC 2 cut(s) 285, 321
HpyF3I CTNAG 1 cut(s) 308
Hsp92II CATG 2 cut(s) 35, 448
HspAI GCGC 1 cut(s) 186
Kzo9I GATC 3 cut(s) 48, 299, 394
LmnI GCTCC 1 cut(s) 27
LpnPI CCDG 6 cut(s) 59, 244, 310, 311, 338, 351
Lsp1109I GCAGC 1 cut(s) 299
LweI GCATC 3 cut(s) 94, 164, 357
MaeI CTAG 2 cut(s) 407, 419
MalI GATC 3 cut(s) 50, 301, 396
MboI GATC 3 cut(s) 48, 299, 394
MflI RGATCY 1 cut(s) 299
MluCI AATT 3 cut(s) 196, 225, 414
MlyI GAGTC 3 cut(s) 364, 390, 449
MmeI TCCRAC 1 cut(s) 251
MnlI CCTC 4 cut(s) 161, 357, 382, 425
MseI TTAA 1 cut(s) 144
MspI CCGG 2 cut(s) 46, 297
MspR9I CCNGG 1 cut(s) 326
MvaI CCWGG 1 cut(s) 326
MvnI CGCG 1 cut(s) 188
MwoI GCNNNNNNNGC 2 cut(s) 285, 321
NcoI CCATGG 1 cut(s) 444
NdeII GATC 3 cut(s) 48, 299, 394
NlaIII CATG 2 cut(s) 35, 448
NlaIV GGNNCC 3 cut(s) 172, 289, 301
PaeR7I CTCGAG 1 cut(s) 378
PkrI GCNGC 2 cut(s) 241, 314
PleI GAGTC 3 cut(s) 363, 389, 448
PpsI GAGTC 3 cut(s) 363, 389, 448
Psp6I CCWGG 1 cut(s) 324
PspGI CCWGG 1 cut(s) 324
PspN4I GGNNCC 3 cut(s) 172, 289, 301
PspPI GGNCC 1 cut(s) 287
PspXI VCTCGAGB 1 cut(s) 378
PsuI RGATCY 1 cut(s) 299
RsaI GTAC 1 cut(s) 80
RsaNI GTAC 1 cut(s) 79
SaqAI TTAA 1 cut(s) 144
SatI GCNGC 2 cut(s) 240, 313
Sau3AI GATC 3 cut(s) 48, 299, 394
Sau96I GGNCC 1 cut(s) 287
SchI GAGTC 3 cut(s) 364, 390, 449
ScrFI CCNGG 1 cut(s) 326
SetI ASST 6 cut(s) 86, 123, 172, 256, 314, 436
SfaNI GCATC 3 cut(s) 94, 164, 357
Sfr274I CTCGAG 1 cut(s) 378
SlaI CTCGAG 1 cut(s) 378
SmlI CTYRAG 1 cut(s) 378
SmoI CTYRAG 1 cut(s) 378
Sse9I AATT 3 cut(s) 196, 225, 414
SsiI CCGC 1 cut(s) 240
SspMI CTAG 2 cut(s) 407, 419
StyD4I CCNGG 1 cut(s) 324
StyI CCWWGG 2 cut(s) 401, 444
TaqI TCGA 3 cut(s) 51, 379, 430
TasI AATT 3 cut(s) 196, 225, 414
TatI WGTACW 1 cut(s) 78
TauI GCSGC 1 cut(s) 242
Tru1I TTAA 1 cut(s) 144
Tru9I TTAA 1 cut(s) 144
TseI GCWGC 1 cut(s) 312
TspDTI ATGAA 1 cut(s) 189
TspGWI ACGGA 1 cut(s) 14
XhoI CTCGAG 1 cut(s) 378
XspI CTAG 2 cut(s) 407, 419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.