Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

7865358 .. 7867243

Gene Structure 1886 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G098400.1_v2.0.a1.CDS.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGAAGATAAGCAACAACCTGTTGGGTCTTCTCAACATCCTCATCTTCCTCGTATCGATTCCAATCGTCTATTTCGGGATAATTGCGAACAAGACAAACAGCGGAGGAGAGTGCCTCGACCTTTTTAGGAAGCCCTTCCTTGTAGTCGGCGTTTTCGTCATGGTGATGTCAATCTTCGGCATAATCGGGGGGTGTTGCCGGGTCCCTTGGATCCTATGGACGTACCTGGCCATCATGTTCCTCGTCCTGTTCGCCTACTTCTGCATGTGGATTTTCGCCTTCTTCGTCACTTGGAAACCAGGTGGTGGAACGGAGATTCTTGGTACGGGGCACAAGGAGTTTAAGCTTAATCGATACTCCGAGTGGATACAGATGAGGGTTCAAGACGAAAAGAATTGGAAGAAGATCAAGCACTGTCTCATTCTTGGCGATTACTGCCCTAGTTTGATGCCCGGAAATGGCACTTCCCTCCGGGATTTCAACAAAGAGGAATTGGCACCAGTTCTGTCTAGTTGTTGTATGCCATCAGTTGAGTGTGGATTTAGCTATGAGACCCCTATCGTGTGGAAGAAGAAGAATAACAGTGCTTCTTCCAACCCTGACTGCAAAGCATGGGACAACGACCGAAAGGTTCTGTGCTTCAACTGCGAGTCTTGCAAGGCTGGAATGCTGGAACAACTGATAATTTCTTGGAAGGCGATGCACCTTTTCAGAACCCTAATGCTTGGCTTCCTCTGTTTGGTGTACGCTGTTGCATGCTGCGCATTCAAAAACACCAGAGAGAAATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0012505 GO:0016020 GO:0030054 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tetraspannin

Protein Analysis

264

Amino Acids

29.99

Weight (kDa)

8.82

Isoelectric Point (pI)

39.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	763
AccB1I	GGYRCC	1 cut(s)	496
AccB7I	CCANNNNNTGG	1 cut(s)	305
AciI	CCGC	1 cut(s)	102
AclWI	GGATC	2 cut(s)	205, 218
AcoI	YGGCCR	1 cut(s)	228
AcsI	RAATTY	1 cut(s)	785
AfaI	GTAC	3 cut(s)	224, 325, 746
AfiI	CCNNNNNNNGG	3 cut(s)	305, 458, 739
AgsI	TTSAA	4 cut(s)	383, 481, 643, 769
AjnI	CCWGG	2 cut(s)	225, 298
AluBI	AGCT	2 cut(s)	346, 546
AluI	AGCT	2 cut(s)	346, 546
Alw26I	GTCTC	2 cut(s)	422, 545
AlwI	GGATC	2 cut(s)	205, 218
AoxI	GGCC	1 cut(s)	228
ApeKI	GCWGC	1 cut(s)	759
ApoI	RAATTY	1 cut(s)	785
Asp700I	GAANNNNTTC	1 cut(s)	134
AspLEI	GCGC	1 cut(s)	764
AspS9I	GGNCC	1 cut(s)	202
AsuC2I	CCSGG	3 cut(s)	200, 453, 473
AsuHPI	GGTGA	1 cut(s)	175
AvaII	GGWCC	1 cut(s)	202
BaeGI	GKGCMC	1 cut(s)	333
BalI	TGGCCA	1 cut(s)	230
BamHI	GGATCC	1 cut(s)	210
BanI	GGYRCC	1 cut(s)	496
BbsI	GAAGAC	1 cut(s)	20
BbvI	GCAGC	1 cut(s)	746
BccI	CCATC	2 cut(s)	239, 532
BciT130I	CCWGG	2 cut(s)	227, 300
BciVI	GTATCC	1 cut(s)	360
BcnI	CCSGG	3 cut(s)	200, 453, 473
BcoDI	GTCTC	2 cut(s)	422, 545
BfaI	CTAG	2 cut(s)	441, 510
BfuI	GTATCC	1 cut(s)	360
BisI	GCNGC	1 cut(s)	760
BlsI	GCNGC	1 cut(s)	761
Bme1390I	CCNGG	5 cut(s)	200, 227, 300, 453, 473
Bme18I	GGWCC	1 cut(s)	202
BmgT120I	GGNCC	1 cut(s)	202
BmiI	GGNNCC	4 cut(s)	203, 204, 212, 498
BmrFI	CCNGG	5 cut(s)	200, 227, 300, 453, 473
BmsI	GCATC	2 cut(s)	438, 690
BpiI	GAAGAC	1 cut(s)	20
BplI	GAGNNNNNCTC	2 cut(s)	99, 131
BpuMI	CCSGG	3 cut(s)	200, 453, 473
Bsa29I	ATCGAT	2 cut(s)	56, 352
BsaBI	GATNNNNATC	2 cut(s)	62, 170
BsaI	GGTCTC	1 cut(s)	545
BsaJI	CCNNGG	1 cut(s)	206
Bsc4I	CCNNNNNNNGG	3 cut(s)	305, 458, 739
Bse1I	ACTGG	1 cut(s)	500
Bse8I	GATNNNNATC	2 cut(s)	62, 170
BseBI	CCWGG	2 cut(s)	227, 300
BseCI	ATCGAT	2 cut(s)	56, 352
BseDI	CCNNGG	1 cut(s)	206
BseGI	GGATG	1 cut(s)	36
BseJI	GATNNNNATC	2 cut(s)	62, 170
BseLI	CCNNNNNNNGG	3 cut(s)	305, 458, 739
BseNI	ACTGG	1 cut(s)	500
BseRI	GAGGAG	1 cut(s)	120
BseSI	GKGCMC	1 cut(s)	333
BseXI	GCAGC	1 cut(s)	746
Bsh1285I	CGRYCG	1 cut(s)	625
BshFI	GGCC	1 cut(s)	230
BshNI	GGYRCC	1 cut(s)	496
BshVI	ATCGAT	2 cut(s)	56, 352
BsiEI	CGRYCG	1 cut(s)	625
BsiSI	CCGG	3 cut(s)	199, 453, 472
BslFI	GGGAC	2 cut(s)	188, 629
BslI	CCNNNNNNNGG	3 cut(s)	305, 458, 739
BsmAI	GTCTC	2 cut(s)	422, 545
BsmFI	GGGAC	2 cut(s)	188, 629
BsmI	GAATGC	2 cut(s)	672, 764
BsnI	GGCC	1 cut(s)	230
Bso31I	GGTCTC	1 cut(s)	545
Bsp1286I	GDGCHC	1 cut(s)	333
Bsp143I	GATC	2 cut(s)	210, 405
BspACI	CCGC	1 cut(s)	102
BspANI	GGCC	1 cut(s)	230
BspDI	ATCGAT	2 cut(s)	56, 352
BspLI	GGNNCC	4 cut(s)	203, 204, 212, 498
BspPI	GGATC	2 cut(s)	205, 218
BspT107I	GGYRCC	1 cut(s)	496
BspTNI	GGTCTC	1 cut(s)	545
BsrI	ACTGG	1 cut(s)	500
BssECI	CCNNGG	1 cut(s)	206
BssMI	GATC	2 cut(s)	210, 405
BssT1I	CCWWGG	1 cut(s)	206
Bst2UI	CCWGG	2 cut(s)	227, 300
Bst4CI	ACNGT	2 cut(s)	416, 584
BstC8I	GCNNGC	1 cut(s)	757
BstF5I	GGATG	1 cut(s)	36
BstHHI	GCGC	1 cut(s)	764
BstKTI	GATC	2 cut(s)	213, 408
BstMAI	GTCTC	2 cut(s)	422, 545
BstMBI	GATC	2 cut(s)	210, 405
BstMCI	CGRYCG	1 cut(s)	625
BstMWI	GCNNNNNNNGC	4 cut(s)	435, 645, 654, 761
BstNI	CCWGG	2 cut(s)	227, 300
BstNSI	RCATGY	2 cut(s)	268, 759
BstSCI	CCNGG	5 cut(s)	198, 225, 298, 451, 471
BstSLI	GKGCMC	1 cut(s)	333
BstV1I	GCAGC	1 cut(s)	746
BstV2I	GAAGAC	1 cut(s)	20
BstX2I	RGATCY	1 cut(s)	210
BstYI	RGATCY	1 cut(s)	210
Bsu15I	ATCGAT	2 cut(s)	56, 352
BsuI	GTATCC	1 cut(s)	360
BsuRI	GGCC	1 cut(s)	230
BsuTUI	ATCGAT	2 cut(s)	56, 352
BtgZI	GCGATG	1 cut(s)	713
BtsCI	GGATG	1 cut(s)	36
BtsIMutI	CAGTG	2 cut(s)	412, 589
Cac8I	GCNNGC	1 cut(s)	757
CfoI	GCGC	1 cut(s)	764
Cfr13I	GGNCC	1 cut(s)	202
ClaI	ATCGAT	2 cut(s)	56, 352
CsiI	ACCWGGT	1 cut(s)	298
Csp6I	GTAC	3 cut(s)	223, 324, 745
CviAII	CATG	5 cut(s)	160, 235, 265, 612, 756
CviJI	RGCY	6 cut(s)	133, 230, 346, 546, 662, 729
CviKI_1	RGCY	6 cut(s)	133, 230, 346, 546, 662, 729
CviQI	GTAC	3 cut(s)	223, 324, 745
DpnI	GATC	2 cut(s)	212, 407
DpnII	GATC	2 cut(s)	210, 405
EaeI	YGGCCR	1 cut(s)	228
Eco130I	CCWWGG	1 cut(s)	206
Eco31I	GGTCTC	1 cut(s)	545
Eco47I	GGWCC	1 cut(s)	202
EcoO109I	RGGNCCY	1 cut(s)	202
EcoRII	CCWGG	2 cut(s)	225, 298
EcoT14I	CCWWGG	1 cut(s)	206
ErhI	CCWWGG	1 cut(s)	206
FaeI	CATG	5 cut(s)	163, 238, 268, 615, 759
FaiI	YATR	9 cut(s)	161, 182, 217, 236, 266, 521, 549, 613, 757
FaqI	GGGAC	2 cut(s)	188, 629
FatI	CATG	5 cut(s)	159, 234, 264, 611, 755
Fnu4HI	GCNGC	1 cut(s)	760
FokI	GGATG	1 cut(s)	23
Fsp4HI	GCNGC	1 cut(s)	760
FspBI	CTAG	2 cut(s)	441, 510
FspI	TGCGCA	1 cut(s)	763
GlaI	GCGC	1 cut(s)	763
GluI	GCNGC	1 cut(s)	760
HaeIII	GGCC	1 cut(s)	230
HapII	CCGG	3 cut(s)	199, 453, 472
HhaI	GCGC	1 cut(s)	764
Hin1II	CATG	5 cut(s)	163, 238, 268, 615, 759
Hin6I	GCGC	1 cut(s)	762
HinP1I	GCGC	1 cut(s)	762
HindIII	AAGCTT	1 cut(s)	344
HinfI	GANTC	3 cut(s)	58, 316, 650
HpaII	CCGG	3 cut(s)	199, 453, 472
HphI	GGTGA	1 cut(s)	175
Hpy166II	GTNNAC	1 cut(s)	745
Hpy188I	TCNGA	3 cut(s)	361, 713, 791
Hpy188III	TCNNGA	2 cut(s)	76, 383
Hpy8I	GTNNAC	1 cut(s)	745
HpyAV	CCTTC	3 cut(s)	145, 289, 688
HpyCH4III	ACNGT	2 cut(s)	416, 584
HpyCH4IV	ACGT	1 cut(s)	221
HpyCH4V	TGCA	5 cut(s)	264, 606, 657, 703, 755
HpyF10VI	GCNNNNNNNGC	4 cut(s)	435, 645, 654, 761
HpySE526I	ACGT	1 cut(s)	221
Hsp92II	CATG	5 cut(s)	163, 238, 268, 615, 759
HspAI	GCGC	1 cut(s)	762
KflI	GGGWCCC	1 cut(s)	202
Kzo9I	GATC	2 cut(s)	210, 405
Lsp1109I	GCAGC	1 cut(s)	746
LweI	GCATC	2 cut(s)	438, 690
MabI	ACCWGGT	1 cut(s)	298
MaeI	CTAG	2 cut(s)	441, 510
MaeII	ACGT	1 cut(s)	221
MaeIII	GTNAC	1 cut(s)	286
MalI	GATC	2 cut(s)	212, 407
MboI	GATC	2 cut(s)	210, 405
MflI	RGATCY	1 cut(s)	210
MhlI	GDGCHC	1 cut(s)	333
MlsI	TGGCCA	1 cut(s)	230
MluCI	AATT	5 cut(s)	81, 394, 491, 684, 785
MluNI	TGGCCA	1 cut(s)	230
MlyI	GAGTC	1 cut(s)	659
MmeI	TCCRAC	1 cut(s)	618
MnlI	CCTC	9 cut(s)	50, 59, 98, 125, 251, 369, 479, 481, 743
Mox20I	TGGCCA	1 cut(s)	230
MroXI	GAANNNNTTC	1 cut(s)	134
MscI	TGGCCA	1 cut(s)	230
MseI	TTAA	2 cut(s)	342, 348
MslI	CAYNNNNRTG	1 cut(s)	164
Msp20I	TGGCCA	1 cut(s)	230
MspA1I	CMGCKG	1 cut(s)	102
MspI	CCGG	3 cut(s)	199, 453, 472
MspR9I	CCNGG	5 cut(s)	200, 227, 300, 453, 473
Mva1269I	GAATGC	2 cut(s)	672, 764
MvaI	CCWGG	2 cut(s)	227, 300
MwoI	GCNNNNNNNGC	4 cut(s)	435, 645, 654, 761
NciI	CCSGG	3 cut(s)	200, 453, 473
NdeII	GATC	2 cut(s)	210, 405
NlaIII	CATG	5 cut(s)	163, 238, 268, 615, 759
NlaIV	GGNNCC	4 cut(s)	203, 204, 212, 498
NmuCI	GTSAC	1 cut(s)	286
NsbI	TGCGCA	1 cut(s)	763
NspI	RCATGY	2 cut(s)	268, 759
PaeI	GCATGC	1 cut(s)	759
PcsI	WCGNNNNNNNCGW	2 cut(s)	153, 282
PctI	GAATGC	2 cut(s)	672, 764
PdmI	GAANNNNTTC	1 cut(s)	134
PfeI	GAWTC	2 cut(s)	58, 316
PflMI	CCANNNNNTGG	1 cut(s)	305
PfoI	TCCNGGA	1 cut(s)	471
PkrI	GCNGC	1 cut(s)	761
PleI	GAGTC	1 cut(s)	658
PpsI	GAGTC	1 cut(s)	658
PpuMI	RGGWCCY	1 cut(s)	202
Psp5II	RGGWCCY	1 cut(s)	202
Psp6I	CCWGG	2 cut(s)	225, 298
PspGI	CCWGG	2 cut(s)	225, 298
PspN4I	GGNNCC	4 cut(s)	203, 204, 212, 498
PspPI	GGNCC	1 cut(s)	202
PspPPI	RGGWCCY	1 cut(s)	202
PsuI	RGATCY	1 cut(s)	210
RsaI	GTAC	3 cut(s)	224, 325, 746
RsaNI	GTAC	3 cut(s)	223, 324, 745
RseI	CAYNNNNRTG	1 cut(s)	164
SaqAI	TTAA	2 cut(s)	342, 348
SatI	GCNGC	1 cut(s)	760
Sau3AI	GATC	2 cut(s)	210, 405
Sau96I	GGNCC	1 cut(s)	202
SchI	GAGTC	1 cut(s)	659
ScrFI	CCNGG	5 cut(s)	200, 227, 300, 453, 473
SduI	GDGCHC	1 cut(s)	333
SetI	ASST	9 cut(s)	21, 123, 224, 228, 304, 348, 548, 633, 708
SexAI	ACCWGGT	1 cut(s)	298
SfaNI	GCATC	2 cut(s)	438, 690
SinI	GGWCC	1 cut(s)	202
SmiMI	CAYNNNNRTG	1 cut(s)	164
SphI	GCATGC	1 cut(s)	759
Sse9I	AATT	5 cut(s)	81, 394, 491, 684, 785
SsiI	CCGC	1 cut(s)	102
SspMI	CTAG	2 cut(s)	441, 510
StyD4I	CCNGG	5 cut(s)	198, 225, 298, 451, 471
StyI	CCWWGG	1 cut(s)	206
TaaI	ACNGT	2 cut(s)	416, 584
TaiI	ACGT	1 cut(s)	224
TaqI	TCGA	3 cut(s)	56, 117, 352
TaqII	GACCGA	1 cut(s)	639
TasI	AATT	5 cut(s)	81, 394, 491, 684, 785
TfiI	GAWTC	2 cut(s)	58, 316
Tru1I	TTAA	2 cut(s)	342, 348
Tru9I	TTAA	2 cut(s)	342, 348
TscAI	CASTG	2 cut(s)	419, 589
TseFI	GTSAC	1 cut(s)	286
TseI	GCWGC	1 cut(s)	759
Tsp45I	GTSAC	1 cut(s)	286
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	326
TspRI	CASTG	2 cut(s)	419, 589
Van91I	CCANNNNNTGG	1 cut(s)	305
VpaK11BI	GGWCC	1 cut(s)	202
XapI	RAATTY	1 cut(s)	785
XceI	RCATGY	2 cut(s)	268, 759
XmnI	GAANNNNTTC	1 cut(s)	134
XspI	CTAG	2 cut(s)	441, 510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.