Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0029183

Physical Location & Seq

Genomic Coordinates Reverse (-)

8605124 .. 8607385

Gene Structure 2262 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G107300.1_v2.0.a1.CDS.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGAGCATGAATAACCTTAACTTCGATGACCAATACGGGATTTTGAGAACATTTTCTGATTCAATGCCAACTCATTACACGTTCAAAATACAGTCGTTTTCATTGATGTCCAAACATTCACTGGAGAGATATGAATCGGAAGACTTTGAAGCTGGAGGATACAAATGGAAACTGGCTTTCTATCCAAATGGAAAAAAGAGCAAGAATGTGAAAGAGCACATCTCTCTCTACTTAGTATTGGCTGGAGCAAATGGCCCCCAGACCTGTTGGGAAGTGTATGCTGCTTTCGGGTTGTTTTTACTTGATCAGAACAATGGCAAGTACTTGGCTCTTGAAGAAGAACAAAAGGAAAGGTGCTTCCATGGGATTAAGCTTGACTGGGGATTTGATCAATTTCTCTCTCAAAAAGATTTCACTGATGCTTCCAATGGATTTCTTGTGGATGACGCCTGTGTGTTTGGAGCAGAGGTCTTTGTTCGAAAAGAAAGAAGCACATGCAAAGGAGAGTGTCTATCAATGATCAAGGATGCCGTTATGTACAAGCATGTTTGGAAAATTGAAAACTTTTCAAAGTTAGATGAGGAGAGCTACGACTCAGAAACATTCATCGCTGGAGACCAGAAATGGAAGATAGAGTTCTATCCCGAGGGAAGAGACAATGGGAAGGGTAGCCATCTTTCTATTGATTTGGCATTGGCTGATCCCACATCTCTGTCTCCAACCTCTAAATTATATGCACAGTTTACCCTTCGCCTCGTAGACCCAGTGTACAGCTCCCGTCACTTTGAATATGGTACTAAAGCTACTTGGTGGTTCAGTGCCTCCAGTCCAAAGCGGGGCTGGCCGAAATTCATTACACTGGGAATTTTCAGTGATAAGAGCTTGGGGTATTTGGAGAATGATAGTACCATTGTAGAGGCAGAGGTCACTGTGCTTGGAACTGCTAGTGCGCTAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

MATH

Protein Analysis

320

Amino Acids

36.37

Weight (kDa)

5.29

Isoelectric Point (pI)

36.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029183)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G107300_v2.0.a1 Prupe.1G107300_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	759
AciI	CCGC	1 cut(s)	835
AclWI	GGATC	1 cut(s)	695
AcoI	YGGCCR	1 cut(s)	842
AcsI	RAATTY	2 cut(s)	848, 864
AcyI	GRCGYC	1 cut(s)	447
AfaI	GTAC	5 cut(s)	323, 539, 770, 796, 907
AfiI	CCNNNNNNNGG	1 cut(s)	836
AflIII	ACRYGT	1 cut(s)	78
AgsI	TTSAA	7 cut(s)	63, 85, 149, 335, 560, 570, 788
AluBI	AGCT	6 cut(s)	152, 373, 588, 774, 803, 882
AluI	AGCT	6 cut(s)	152, 373, 588, 774, 803, 882
Alw21I	GWGCWC	1 cut(s)	219
Alw26I	GTCTC	3 cut(s)	609, 648, 720
AlwI	GGATC	1 cut(s)	695
Ama87I	CYCGRG	1 cut(s)	644
AoxI	GGCC	2 cut(s)	253, 842
ApeKI	GCWGC	1 cut(s)	281
ApoI	RAATTY	2 cut(s)	848, 864
ArsI	GACNNNNNNTTYG	2 cut(s)	368, 400
Asp700I	GAANNNNTTC	1 cut(s)	52
AspLEI	GCGC	1 cut(s)	952
AspS9I	GGNCC	1 cut(s)	254
AsuII	TTCGAA	1 cut(s)	478
AvaI	CYCGRG	1 cut(s)	644
BbsI	GAAGAC	1 cut(s)	147
Bbv12I	GWGCWC	1 cut(s)	219
BbvI	GCAGC	1 cut(s)	268
BccI	CCATC	1 cut(s)	681
BceAI	ACGGC	1 cut(s)	515
BciVI	GTATCC	1 cut(s)	152
BclI	TGATCA	3 cut(s)	304, 388, 519
BcoDI	GTCTC	3 cut(s)	609, 648, 720
BfaI	CTAG	2 cut(s)	945, 953
BfuI	GTATCC	1 cut(s)	152
BisI	GCNGC	1 cut(s)	282
BlsI	GCNGC	1 cut(s)	283
BmcAI	AGTACT	1 cut(s)	323
BmeT110I	CYCGRG	1 cut(s)	644
BmgT120I	GGNCC	1 cut(s)	254
BmiI	GGNNCC	1 cut(s)	256
BmrI	ACTGGG	3 cut(s)	388, 758, 869
BmsI	GCATC	2 cut(s)	409, 517
BmuI	ACTGGG	3 cut(s)	388, 758, 869
BpiI	GAAGAC	1 cut(s)	147
BplI	GAGNNNNNCTC	2 cut(s)	206, 238
BpmI	CTGGAG	5 cut(s)	143, 174, 264, 633, 808
Bpu14I	TTCGAA	1 cut(s)	478
BsaBI	GATNNNNATC	1 cut(s)	133
BsaHI	GRCGYC	1 cut(s)	447
BsaI	GGTCTC	1 cut(s)	609
BsaJI	CCNNGG	2 cut(s)	361, 645
BsaXI	ACNNNNNCTCC	2 cut(s)	453, 483
Bsc4I	CCNNNNNNNGG	1 cut(s)	836
Bse1I	ACTGG	6 cut(s)	126, 177, 383, 764, 825, 864
Bse8I	GATNNNNATC	1 cut(s)	133
BseDI	CCNNGG	2 cut(s)	361, 645
BseGI	GGATG	2 cut(s)	448, 532
BseJI	GATNNNNATC	1 cut(s)	133
BseLI	CCNNNNNNNGG	1 cut(s)	836
BseMII	CTCAG	1 cut(s)	609
BseNI	ACTGG	6 cut(s)	126, 177, 383, 764, 825, 864
BseRI	GAGGAG	1 cut(s)	596
BseXI	GCAGC	1 cut(s)	268
BshFI	GGCC	2 cut(s)	255, 844
BsiHKAI	GWGCWC	1 cut(s)	219
BsiHKCI	CYCGRG	1 cut(s)	644
BslI	CCNNNNNNNGG	1 cut(s)	836
BsmAI	GTCTC	3 cut(s)	609, 648, 720
BsnI	GGCC	2 cut(s)	255, 844
Bso31I	GGTCTC	1 cut(s)	609
BsoBI	CYCGRG	1 cut(s)	644
Bsp119I	TTCGAA	1 cut(s)	478
Bsp1286I	GDGCHC	1 cut(s)	219
Bsp1407I	TGTACA	2 cut(s)	537, 768
Bsp143I	GATC	4 cut(s)	304, 388, 519, 700
Bsp19I	CCATGG	1 cut(s)	361
BspACI	CCGC	1 cut(s)	835
BspANI	GGCC	2 cut(s)	255, 844
BspCNI	CTCAG	1 cut(s)	608
BspLI	GGNNCC	1 cut(s)	256
BspPI	GGATC	1 cut(s)	695
BspT104I	TTCGAA	1 cut(s)	478
BspTNI	GGTCTC	1 cut(s)	609
BsrGI	TGTACA	2 cut(s)	537, 768
BsrI	ACTGG	6 cut(s)	126, 177, 383, 764, 825, 864
BssECI	CCNNGG	2 cut(s)	361, 645
BssMI	GATC	4 cut(s)	304, 388, 519, 700
BssNI	GRCGYC	1 cut(s)	447
BssT1I	CCWWGG	1 cut(s)	361
Bst4CI	ACNGT	3 cut(s)	93, 741, 931
Bst6I	CTCTTC	1 cut(s)	646
BstACI	GRCGYC	1 cut(s)	447
BstAUI	TGTACA	2 cut(s)	537, 768
BstBI	TTCGAA	1 cut(s)	478
BstC8I	GCNNGC	1 cut(s)	842
BstDEI	CTNAG	2 cut(s)	232, 595
BstDSI	CCRYGG	1 cut(s)	361
BstF5I	GGATG	2 cut(s)	448, 532
BstHHI	GCGC	1 cut(s)	952
BstKTI	GATC	4 cut(s)	307, 391, 522, 703
BstMAI	GTCTC	3 cut(s)	609, 648, 720
BstMBI	GATC	4 cut(s)	304, 388, 519, 700
BstMWI	GCNNNNNNNGC	1 cut(s)	841
BstNSI	RCATGY	2 cut(s)	498, 548
BstV1I	GCAGC	1 cut(s)	268
BstV2I	GAAGAC	1 cut(s)	147
BsuI	GTATCC	1 cut(s)	152
BsuRI	GGCC	2 cut(s)	255, 844
BtgI	CCRYGG	1 cut(s)	361
BtgZI	GCGATG	1 cut(s)	592
BtsCI	GGATG	2 cut(s)	448, 532
BtsIMutI	CAGTG	7 cut(s)	119, 414, 771, 823, 857, 877, 927
Cac8I	GCNNGC	1 cut(s)	842
CfoI	GCGC	1 cut(s)	952
Cfr13I	GGNCC	1 cut(s)	254
CseI	GACGC	1 cut(s)	455
Csp6I	GTAC	5 cut(s)	322, 538, 769, 795, 906
CviAII	CATG	4 cut(s)	7, 362, 495, 545
CviQI	GTAC	5 cut(s)	322, 538, 769, 795, 906
DdeI	CTNAG	2 cut(s)	232, 595
DpnI	GATC	4 cut(s)	306, 390, 521, 702
DpnII	GATC	4 cut(s)	304, 388, 519, 700
EaeI	YGGCCR	1 cut(s)	842
Eam1104I	CTCTTC	1 cut(s)	646
EarI	CTCTTC	1 cut(s)	646
Eco130I	CCWWGG	1 cut(s)	361
Eco31I	GGTCTC	1 cut(s)	609
Eco88I	CYCGRG	1 cut(s)	644
EcoT14I	CCWWGG	1 cut(s)	361
ErhI	CCWWGG	1 cut(s)	361
FaeI	CATG	4 cut(s)	10, 365, 498, 548
FatI	CATG	4 cut(s)	6, 361, 494, 544
FauI	CCCGC	1 cut(s)	828
FbaI	TGATCA	3 cut(s)	304, 388, 519
FblI	GTMKAC	1 cut(s)	759
Fnu4HI	GCNGC	1 cut(s)	282
FokI	GGATG	2 cut(s)	455, 539
Fsp4HI	GCNGC	1 cut(s)	282
FspBI	CTAG	2 cut(s)	945, 953
GlaI	GCGC	1 cut(s)	951
GluI	GCNGC	1 cut(s)	282
GsuI	CTGGAG	5 cut(s)	143, 174, 264, 633, 808
HaeIII	GGCC	2 cut(s)	255, 844
HgaI	GACGC	1 cut(s)	455
HhaI	GCGC	1 cut(s)	952
Hin1I	GRCGYC	1 cut(s)	447
Hin1II	CATG	4 cut(s)	10, 365, 498, 548
Hin6I	GCGC	1 cut(s)	950
HinP1I	GCGC	1 cut(s)	950
HindIII	AAGCTT	1 cut(s)	371
HinfI	GANTC	3 cut(s)	59, 134, 593
Hpy166II	GTNNAC	3 cut(s)	744, 760, 769
Hpy188I	TCNGA	4 cut(s)	58, 139, 309, 598
Hpy188III	TCNNGA	2 cut(s)	332, 644
Hpy8I	GTNNAC	3 cut(s)	744, 760, 769
HpyAV	CCTTC	2 cut(s)	658, 758
HpyCH4III	ACNGT	3 cut(s)	93, 741, 931
HpyCH4IV	ACGT	1 cut(s)	80
HpyCH4V	TGCA	2 cut(s)	498, 737
HpyF10VI	GCNNNNNNNGC	1 cut(s)	841
HpyF3I	CTNAG	2 cut(s)	232, 595
HpySE526I	ACGT	1 cut(s)	80
Hsp92I	GRCGYC	1 cut(s)	447
Hsp92II	CATG	4 cut(s)	10, 365, 498, 548
HspAI	GCGC	1 cut(s)	950
Ksp22I	TGATCA	3 cut(s)	304, 388, 519
Kzo9I	GATC	4 cut(s)	304, 388, 519, 700
LmnI	GCTCC	3 cut(s)	245, 461, 779
Lsp1109I	GCAGC	1 cut(s)	268
LweI	GCATC	2 cut(s)	409, 517
MaeI	CTAG	2 cut(s)	945, 953
MaeII	ACGT	1 cut(s)	80
MaeIII	GTNAC	2 cut(s)	779, 925
MalI	GATC	4 cut(s)	306, 390, 521, 702
MboI	GATC	4 cut(s)	304, 388, 519, 700
MboII	GAAGA	5 cut(s)	152, 347, 350, 640, 663
MhlI	GDGCHC	1 cut(s)	219
MluCI	AATT	5 cut(s)	392, 555, 728, 848, 864
MlyI	GAGTC	1 cut(s)	587
MmeI	TCCRAC	1 cut(s)	743
MnlI	CCTC	9 cut(s)	149, 460, 574, 640, 733, 764, 832, 910, 916
MroXI	GAANNNNTTC	1 cut(s)	52
MseI	TTAA	2 cut(s)	18, 369
MwoI	GCNNNNNNNGC	1 cut(s)	841
NcoI	CCATGG	1 cut(s)	361
NdeII	GATC	4 cut(s)	304, 388, 519, 700
NlaIII	CATG	4 cut(s)	10, 365, 498, 548
NlaIV	GGNNCC	1 cut(s)	256
NmuCI	GTSAC	2 cut(s)	779, 925
NspI	RCATGY	2 cut(s)	498, 548
NspV	TTCGAA	1 cut(s)	478
PdmI	GAANNNNTTC	1 cut(s)	52
PfeI	GAWTC	2 cut(s)	59, 134
PkrI	GCNGC	1 cut(s)	283
PleI	GAGTC	1 cut(s)	587
PpsI	GAGTC	1 cut(s)	587
PspN4I	GGNNCC	1 cut(s)	256
PspPI	GGNCC	1 cut(s)	254
RsaI	GTAC	5 cut(s)	323, 539, 770, 796, 907
RsaNI	GTAC	5 cut(s)	322, 538, 769, 795, 906
SaqAI	TTAA	2 cut(s)	18, 369
SatI	GCNGC	1 cut(s)	282
Sau3AI	GATC	4 cut(s)	304, 388, 519, 700
Sau96I	GGNCC	1 cut(s)	254
ScaI	AGTACT	1 cut(s)	323
SchI	GAGTC	1 cut(s)	587
SduI	GDGCHC	1 cut(s)	219
SfaNI	GCATC	2 cut(s)	409, 517
SfuI	TTCGAA	1 cut(s)	478
Sse9I	AATT	5 cut(s)	392, 555, 728, 848, 864
SsiI	CCGC	1 cut(s)	835
SspMI	CTAG	2 cut(s)	945, 953
StyI	CCWWGG	1 cut(s)	361
TaaI	ACNGT	3 cut(s)	93, 741, 931
TaiI	ACGT	1 cut(s)	83
TaqI	TCGA	2 cut(s)	24, 478
TasI	AATT	5 cut(s)	392, 555, 728, 848, 864
TatI	WGTACW	3 cut(s)	321, 537, 768
TfiI	GAWTC	2 cut(s)	59, 134
Tru1I	TTAA	2 cut(s)	18, 369
Tru9I	TTAA	2 cut(s)	18, 369
TscAI	CASTG	7 cut(s)	126, 421, 771, 823, 864, 877, 934
TseFI	GTSAC	2 cut(s)	779, 925
TseI	GCWGC	1 cut(s)	281
Tsp45I	GTSAC	2 cut(s)	779, 925
TspDTI	ATGAA	5 cut(s)	23, 90, 147, 595, 841
TspRI	CASTG	7 cut(s)	126, 421, 771, 823, 864, 877, 934
XapI	RAATTY	2 cut(s)	848, 864
XceI	RCATGY	2 cut(s)	498, 548
XcmI	CCANNNNNNNNNTGG	2 cut(s)	118, 837
XmiI	GTMKAC	1 cut(s)	759
XmnI	GAANNNNTTC	1 cut(s)	52
XspI	CTAG	2 cut(s)	945, 953
ZrmI	AGTACT	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.