Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

8622367 .. 8625198

Gene Structure 2832 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G107600.1_v2.0.a1.CDS.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGGCCGCCGTTTTCTTCTCTTGGAAATTGATGCAGAAGAGGTTATGCTTATGGACATATGTCAAGTATTAAGAAGGATGTTTGTCAACAAGGGCAGCCTTCTTGAAGCGAAGTATATATTGCTGTTTATCCTAAAAAATAGTTCGTTGGTCAACTTTACTGCCATGGCTACTCTTAACATCGACCAAGATGGGATTTTGAGGTCATTTTCACAATCACTACAAACTCATTACAATATGAAAATACAGTCATTTTCATCACTGAACAAAAATTATGTGGATAGTATTGAGTCAGGGGAATTCGAAGCAGGAGGACACAAATGGAAACTGAGGTTTTATCCAAATGGAAACTTGAAGAAGAATGTGGTGGACCACATCTCTCTCTACCTTTTTCAGATTGTTTTGCTTTATCAAAATAACGGCACGTACTTGGTTCTTGAAGATGCCAATAAAAAAGTAGAGTGTTTTCATGGGAAGATGCCTTGTTCGGATTTCGATCAATTTATCCCGCTAGAATCATTTGCGGATGCTTCCAACGGATATCTCATTGATGACACCTGTGTGTTTGGAGCTGAGGCATCGTCAGATCGAAAAGCACTTCCTCCTGGCTACAGAATATTCAGAGAGTATTCTCTGCGCCTTGTAGATCAAAAGCTTGCCAATCATCTTTCTTATAAATGTAAAGGCCTCTTAGGGCCTGTTTGCAGTATCACTAGTAGTGGCATGCCTATCGCAATTCACCAGAGAGCAGCTTTTGAGCCCACTTCAGGGCTCGGATCTCTCTCATTTCACTTCCTTCACCAACAAGAAAATCTATATGGGATGGATCCTCCTCATAAAAGCAATGCTGCCGCTGTGGAAATTGAAGATAAAGATGTTCAAGCAATGCAGCTTGAACTGACTCTAATGGAACAACTAATGGTCAAAATGTTAGAGAAGTTGGATAATAACACCAAGGCTATCCAGAGCCTAGAGGAAGATTGCGTTCGCATAATAGCTTCCCCAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

337

Amino Acids

38.02

Weight (kDa)

5.75

Isoelectric Point (pI)

45.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	675
AciI	CCGC	4 cut(s)	7, 509, 524, 852
AclWI	GGATC	3 cut(s)	784, 821, 834
AcsI	RAATTY	1 cut(s)	299
AcuI	CTGAAG	1 cut(s)	750
AfaI	GTAC	1 cut(s)	428
AfiI	CCNNNNNNNGG	2 cut(s)	767, 768
AgsI	TTSAA	6 cut(s)	107, 355, 440, 866, 881, 896
AhlI	ACTAGT	1 cut(s)	713
AjnI	CCWGG	1 cut(s)	604
AleI	CACNNNNGTG	1 cut(s)	560
AluBI	AGCT	5 cut(s)	572, 655, 752, 892, 998
AluI	AGCT	5 cut(s)	572, 655, 752, 892, 998
AlwI	GGATC	3 cut(s)	784, 821, 834
AoxI	GGCC	3 cut(s)	4, 685, 695
ApeKI	GCWGC	4 cut(s)	96, 749, 848, 889
ApoI	RAATTY	1 cut(s)	299
AspLEI	GCGC	1 cut(s)	639
AspS9I	GGNCC	3 cut(s)	4, 370, 695
AsuHPI	GGTGA	2 cut(s)	731, 791
AsuII	TTCGAA	1 cut(s)	303
AvaII	GGWCC	1 cut(s)	370
BamHI	GGATCC	1 cut(s)	826
BanII	GRGCYC	2 cut(s)	762, 774
BbvCI	CCTCAGC	1 cut(s)	573
BbvI	GCAGC	4 cut(s)	108, 761, 835, 901
BccI	CCATC	2 cut(s)	185, 817
BceAI	ACGGC	1 cut(s)	436
BcgI	CGANNNNNNTGC	2 cut(s)	712, 746
BciT130I	CCWGG	1 cut(s)	606
BcuI	ACTAGT	1 cut(s)	713
BfaI	CTAG	3 cut(s)	512, 714, 971
BfmI	CTRYAG	1 cut(s)	610
BisI	GCNGC	6 cut(s)	7, 97, 750, 849, 852, 890
BlsI	GCNGC	6 cut(s)	8, 98, 751, 850, 853, 891
Bme1390I	CCNGG	1 cut(s)	606
Bme18I	GGWCC	1 cut(s)	370
BmgT120I	GGNCC	3 cut(s)	4, 370, 695
BmiI	GGNNCC	1 cut(s)	828
BmrFI	CCNGG	1 cut(s)	606
BmsI	GCATC	5 cut(s)	22, 433, 468, 517, 587
BoxI	GACNNNNGTC	1 cut(s)	60
Bpu10I	CCTNAGC	1 cut(s)	573
Bpu14I	TTCGAA	1 cut(s)	303
BsaAI	YACGTR	1 cut(s)	426
BsaBI	GATNNNNATC	1 cut(s)	495
BsaJI	CCNNGG	2 cut(s)	165, 954
Bsc4I	CCNNNNNNNGG	2 cut(s)	767, 768
Bse3DI	GCAATG	2 cut(s)	850, 891
Bse8I	GATNNNNATC	1 cut(s)	495
BseBI	CCWGG	1 cut(s)	606
BseDI	CCNNGG	2 cut(s)	165, 954
BseGI	GGATG	3 cut(s)	84, 532, 828
BseJI	GATNNNNATC	1 cut(s)	495
BseLI	CCNNNNNNNGG	2 cut(s)	767, 768
BseMI	GCAATG	2 cut(s)	850, 891
BseMII	CTCAG	2 cut(s)	320, 564
BseRI	GAGGAG	1 cut(s)	822
BseXI	GCAGC	4 cut(s)	108, 761, 835, 901
BshFI	GGCC	3 cut(s)	6, 687, 697
BslI	CCNNNNNNNGG	2 cut(s)	767, 768
BsnI	GGCC	3 cut(s)	6, 687, 697
Bsp119I	TTCGAA	1 cut(s)	303
Bsp1286I	GDGCHC	2 cut(s)	762, 774
Bsp143I	GATC	5 cut(s)	496, 586, 646, 776, 826
Bsp19I	CCATGG	1 cut(s)	165
BspACI	CCGC	4 cut(s)	7, 509, 524, 852
BspANI	GGCC	3 cut(s)	6, 687, 697
BspCNI	CTCAG	2 cut(s)	321, 565
BspLI	GGNNCC	1 cut(s)	828
BspPI	GGATC	3 cut(s)	784, 821, 834
BspT104I	TTCGAA	1 cut(s)	303
BsrDI	GCAATG	2 cut(s)	850, 891
BssECI	CCNNGG	2 cut(s)	165, 954
BssMI	GATC	5 cut(s)	496, 586, 646, 776, 826
BssT1I	CCWWGG	2 cut(s)	165, 954
Bst2UI	CCWGG	1 cut(s)	606
Bst4CI	ACNGT	1 cut(s)	249
Bst6I	CTCTTC	1 cut(s)	33
BstBAI	YACGTR	1 cut(s)	426
BstBI	TTCGAA	1 cut(s)	303
BstC8I	GCNNGC	2 cut(s)	657, 725
BstDEI	CTNAG	3 cut(s)	329, 573, 691
BstDSI	CCRYGG	1 cut(s)	165
BstF5I	GGATG	3 cut(s)	84, 532, 828
BstHHI	GCGC	1 cut(s)	639
BstKTI	GATC	5 cut(s)	499, 589, 649, 779, 829
BstMBI	GATC	5 cut(s)	496, 586, 646, 776, 826
BstNI	CCWGG	1 cut(s)	606
BstNSI	RCATGY	1 cut(s)	727
BstPAI	GACNNNNGTC	1 cut(s)	60
BstSCI	CCNGG	1 cut(s)	604
BstSFI	CTRYAG	1 cut(s)	610
BstV1I	GCAGC	4 cut(s)	108, 761, 835, 901
BstX2I	RGATCY	2 cut(s)	776, 826
BstYI	RGATCY	2 cut(s)	776, 826
BsuRI	GGCC	3 cut(s)	6, 687, 697
BtgI	CCRYGG	1 cut(s)	165
BtsCI	GGATG	3 cut(s)	84, 532, 828
BtsIMutI	CAGTG	1 cut(s)	260
Cac8I	GCNNGC	2 cut(s)	657, 725
CfoI	GCGC	1 cut(s)	639
Cfr13I	GGNCC	3 cut(s)	4, 370, 695
Csp6I	GTAC	1 cut(s)	427
CviAII	CATG	3 cut(s)	166, 470, 724
CviQI	GTAC	1 cut(s)	427
DdeI	CTNAG	3 cut(s)	329, 573, 691
DpnI	GATC	5 cut(s)	498, 588, 648, 778, 828
DpnII	GATC	5 cut(s)	496, 586, 646, 776, 826
Eam1104I	CTCTTC	1 cut(s)	33
EarI	CTCTTC	1 cut(s)	33
Eco130I	CCWWGG	2 cut(s)	165, 954
Eco147I	AGGCCT	1 cut(s)	687
Eco24I	GRGCYC	2 cut(s)	762, 774
Eco32I	GATATC	1 cut(s)	542
Eco47I	GGWCC	1 cut(s)	370
Eco57I	CTGAAG	1 cut(s)	750
EcoO109I	RGGNCCY	1 cut(s)	695
EcoRI	GAATTC	1 cut(s)	299
EcoRII	CCWGG	1 cut(s)	604
EcoRV	GATATC	1 cut(s)	542
EcoT14I	CCWWGG	2 cut(s)	165, 954
EcoT38I	GRGCYC	2 cut(s)	762, 774
ErhI	CCWWGG	2 cut(s)	165, 954
FaeI	CATG	3 cut(s)	169, 473, 727
FatI	CATG	3 cut(s)	165, 469, 723
FauI	CCCGC	1 cut(s)	516
FauNDI	CATATG	1 cut(s)	59
Fnu4HI	GCNGC	6 cut(s)	7, 97, 750, 849, 852, 890
FokI	GGATG	3 cut(s)	91, 539, 835
FriOI	GRGCYC	2 cut(s)	762, 774
Fsp4HI	GCNGC	6 cut(s)	7, 97, 750, 849, 852, 890
FspBI	CTAG	3 cut(s)	512, 714, 971
GlaI	GCGC	1 cut(s)	638
GluI	GCNGC	6 cut(s)	7, 97, 750, 849, 852, 890
HaeIII	GGCC	3 cut(s)	6, 687, 697
HhaI	GCGC	1 cut(s)	639
Hin1II	CATG	3 cut(s)	169, 473, 727
Hin6I	GCGC	1 cut(s)	637
HinP1I	GCGC	1 cut(s)	637
HincII	GTYRAC	2 cut(s)	88, 154
HindII	GTYRAC	2 cut(s)	88, 154
HindIII	AAGCTT	1 cut(s)	653
HinfI	GANTC	3 cut(s)	290, 515, 901
HphI	GGTGA	2 cut(s)	731, 791
Hpy166II	GTNNAC	3 cut(s)	88, 154, 370
Hpy188I	TCNGA	5 cut(s)	396, 490, 586, 623, 776
Hpy188III	TCNNGA	3 cut(s)	104, 437, 964
Hpy8I	GTNNAC	3 cut(s)	88, 154, 370
HpyAV	CCTTC	3 cut(s)	69, 110, 806
HpyCH4III	ACNGT	1 cut(s)	249
HpyCH4IV	ACGT	1 cut(s)	425
HpyCH4V	TGCA	3 cut(s)	35, 705, 889
HpyF3I	CTNAG	3 cut(s)	329, 573, 691
HpySE526I	ACGT	1 cut(s)	425
Hsp92II	CATG	3 cut(s)	169, 473, 727
HspAI	GCGC	1 cut(s)	637
Kzo9I	GATC	5 cut(s)	496, 586, 646, 776, 826
LmnI	GCTCC	1 cut(s)	569
LpnPI	CCDG	9 cut(s)	279, 294, 571, 591, 618, 711, 753, 755, 977
Lsp1109I	GCAGC	4 cut(s)	108, 761, 835, 901
LweI	GCATC	5 cut(s)	22, 433, 468, 517, 587
MaeI	CTAG	3 cut(s)	512, 714, 971
MaeII	ACGT	1 cut(s)	425
MalI	GATC	5 cut(s)	498, 588, 648, 778, 828
MboI	GATC	5 cut(s)	496, 586, 646, 776, 826
MboII	GAAGA	8 cut(s)	8, 50, 367, 370, 452, 487, 878, 989
MflI	RGATCY	2 cut(s)	776, 826
MhlI	GDGCHC	2 cut(s)	762, 774
MluCI	AATT	6 cut(s)	27, 271, 299, 500, 735, 861
MlyI	GAGTC	2 cut(s)	299, 895
MmeI	TCCRAC	2 cut(s)	558, 921
MseI	TTAA	2 cut(s)	71, 177
MslI	CAYNNNNRTG	1 cut(s)	560
MspA1I	CMGCKG	1 cut(s)	854
MspR9I	CCNGG	1 cut(s)	606
MvaI	CCWGG	1 cut(s)	606
NcoI	CCATGG	1 cut(s)	165
NdeI	CATATG	1 cut(s)	59
NdeII	GATC	5 cut(s)	496, 586, 646, 776, 826
NlaIII	CATG	3 cut(s)	169, 473, 727
NlaIV	GGNNCC	1 cut(s)	828
NspI	RCATGY	1 cut(s)	727
NspV	TTCGAA	1 cut(s)	303
OliI	CACNNNNGTG	1 cut(s)	560
PaeI	GCATGC	1 cut(s)	727
PceI	AGGCCT	1 cut(s)	687
PfeI	GAWTC	1 cut(s)	515
PkrI	GCNGC	6 cut(s)	8, 98, 751, 850, 853, 891
PleI	GAGTC	2 cut(s)	298, 895
PpsI	GAGTC	2 cut(s)	298, 895
Ppu21I	YACGTR	1 cut(s)	426
PshAI	GACNNNNGTC	1 cut(s)	60
PsiI	TTATAA	1 cut(s)	675
Psp6I	CCWGG	1 cut(s)	604
PspGI	CCWGG	1 cut(s)	604
PspN4I	GGNNCC	1 cut(s)	828
PspPI	GGNCC	3 cut(s)	4, 370, 695
PsuI	RGATCY	2 cut(s)	776, 826
RsaI	GTAC	1 cut(s)	428
RsaNI	GTAC	1 cut(s)	427
RseI	CAYNNNNRTG	1 cut(s)	560
SaqAI	TTAA	2 cut(s)	71, 177
SatI	GCNGC	6 cut(s)	7, 97, 750, 849, 852, 890
Sau3AI	GATC	5 cut(s)	496, 586, 646, 776, 826
Sau96I	GGNCC	3 cut(s)	4, 370, 695
SchI	GAGTC	2 cut(s)	299, 895
ScrFI	CCNGG	1 cut(s)	606
SduI	GDGCHC	2 cut(s)	762, 774
SfaNI	GCATC	5 cut(s)	22, 433, 468, 517, 587
SfcI	CTRYAG	1 cut(s)	610
SfuI	TTCGAA	1 cut(s)	303
SinI	GGWCC	1 cut(s)	370
SmiMI	CAYNNNNRTG	1 cut(s)	560
SpeI	ACTAGT	1 cut(s)	713
SphI	GCATGC	1 cut(s)	727
Sse9I	AATT	6 cut(s)	27, 271, 299, 500, 735, 861
SseBI	AGGCCT	1 cut(s)	687
SsiI	CCGC	4 cut(s)	7, 509, 524, 852
SspI	AATATT	1 cut(s)	618
SspMI	CTAG	3 cut(s)	512, 714, 971
StuI	AGGCCT	1 cut(s)	687
StyD4I	CCNGG	1 cut(s)	604
StyI	CCWWGG	2 cut(s)	165, 954
TaaI	ACNGT	1 cut(s)	249
TaiI	ACGT	1 cut(s)	428
TaqI	TCGA	4 cut(s)	183, 303, 495, 589
TasI	AATT	6 cut(s)	27, 271, 299, 500, 735, 861
TauI	GCSGC	2 cut(s)	9, 854
TfiI	GAWTC	1 cut(s)	515
Tru1I	TTAA	2 cut(s)	71, 177
Tru9I	TTAA	2 cut(s)	71, 177
TscAI	CASTG	1 cut(s)	267
TseI	GCWGC	4 cut(s)	96, 749, 848, 889
TspDTI	ATGAA	3 cut(s)	246, 254, 458
TspGWI	ACGGA	1 cut(s)	552
TspRI	CASTG	1 cut(s)	267
VpaK11BI	GGWCC	1 cut(s)	370
XapI	RAATTY	1 cut(s)	299
XceI	RCATGY	1 cut(s)	727
XspI	CTAG	3 cut(s)	512, 714, 971

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.