Prupe.1G128400_v2.0.a1

Major allergen Pru

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Reverse (-)
10034946 .. 10035794
849 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G128400.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 483 bp
ATGGGTGTCTTCACATACACAGACGAGTCCACCTCAGTCATCCCCCCACCAAGATTGTTCAAAGCCCTTGTTCTTGAAGCTGACACCCTCATCCCCAAGATTGCTCCCCAATCAGTTAAAAGTGCTGAAATTGTTGAAGGAGATGGAGGTGTTGGAACCATCAAGAAGATTAGCTTTGGTGAAGGAAGTCATTACAGCTATGTGAAGCACCGGATCGACGGGCTTGACAAAGATAACTTTGTGTACAGCTACAGTTTGGTTGAAGGAGATGCTCTTTCAGACAAGGTTGAGAAAATCAGTTATGAGATTAAGTTGGTGGCATCTGCTGATGGAGGTTCCATCATAAAGAGCAGCAGCAACTACCACACCACAGGTGATGTTGAGATCAAGGAAGAGGATGTTAAGGCTGGCAAAGAGAAGGCCACTGATCTGTTCAAGCTTATTGAGAACTACCTTGTGGCCAACCCAGATGCCTACAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

161

Amino Acids

17.41

Weight (kDa)

4.88

Isoelectric Point (pI)

17.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 221
AcoI YGGCCR 1 cut(s) 459
AfaI GTAC 1 cut(s) 245
AgsI TTSAA 5 cut(s) 61, 77, 137, 263, 436
AluBI AGCT 5 cut(s) 80, 174, 198, 249, 439
AluI AGCT 5 cut(s) 80, 174, 198, 249, 439
AlwI GGATC 1 cut(s) 221
AoxI GGCC 2 cut(s) 420, 459
ApeKI GCWGC 2 cut(s) 351, 354
AsuHPI GGTGA 2 cut(s) 191, 386
BalI TGGCCA 1 cut(s) 461
BbvI GCAGC 2 cut(s) 363, 366
BccI CCATC 4 cut(s) 137, 167, 323, 347
BfmI CTRYAG 1 cut(s) 250
BisI GCNGC 2 cut(s) 352, 355
BlsI GCNGC 2 cut(s) 353, 356
BmiI GGNNCC 2 cut(s) 157, 337
BmsI GCATC 3 cut(s) 259, 329, 460
BplI GAGNNNNNCTC 2 cut(s) 17, 49
BsaWI WCCGGW 1 cut(s) 210
BseGI GGATG 3 cut(s) 39, 90, 403
BseMII CTCAG 1 cut(s) 48
BseXI GCAGC 2 cut(s) 363, 366
BshFI GGCC 2 cut(s) 422, 461
BsiSI CCGG 1 cut(s) 211
BsnI GGCC 2 cut(s) 422, 461
Bsp1407I TGTACA 1 cut(s) 243
Bsp143I GATC 3 cut(s) 213, 384, 427
BspANI GGCC 2 cut(s) 422, 461
BspCNI CTCAG 1 cut(s) 47
BspLI GGNNCC 2 cut(s) 157, 337
BspPI GGATC 1 cut(s) 221
BsrGI TGTACA 1 cut(s) 243
BssMI GATC 3 cut(s) 213, 384, 427
Bst4CI ACNGT 1 cut(s) 254
Bst6I CTCTTC 1 cut(s) 387
BstAUI TGTACA 1 cut(s) 243
BstC8I GCNNGC 1 cut(s) 409
BstDEI CTNAG 1 cut(s) 34
BstF5I GGATG 3 cut(s) 39, 90, 403
BstKTI GATC 3 cut(s) 216, 387, 430
BstMBI GATC 3 cut(s) 213, 384, 427
BstSFI CTRYAG 1 cut(s) 250
BstV1I GCAGC 2 cut(s) 363, 366
BsuRI GGCC 2 cut(s) 422, 461
BtsCI GGATG 3 cut(s) 39, 90, 403
BtsIMutI CAGTG 1 cut(s) 423
Cac8I GCNNGC 1 cut(s) 409
Csp6I GTAC 1 cut(s) 244
CspCI CAANNNNNGTGG 2 cut(s) 36, 71
CviQI GTAC 1 cut(s) 244
DdeI CTNAG 1 cut(s) 34
DpnI GATC 3 cut(s) 215, 386, 429
DpnII GATC 3 cut(s) 213, 384, 427
EaeI YGGCCR 1 cut(s) 459
Eam1104I CTCTTC 1 cut(s) 387
EarI CTCTTC 1 cut(s) 387
FaiI YATR 4 cut(s) 16, 201, 303, 344
FalI AAGNNNNNCTT 2 cut(s) 158, 190
Fnu4HI GCNGC 2 cut(s) 352, 355
FokI GGATG 3 cut(s) 26, 77, 410
Fsp4HI GCNGC 2 cut(s) 352, 355
GluI GCNGC 2 cut(s) 352, 355
HaeIII GGCC 2 cut(s) 422, 461
HapII CCGG 1 cut(s) 211
HindIII AAGCTT 1 cut(s) 437
HinfI GANTC 1 cut(s) 26
HpaII CCGG 1 cut(s) 211
HphI GGTGA 2 cut(s) 191, 386
Hpy166II GTNNAC 2 cut(s) 30, 244
Hpy188I TCNGA 1 cut(s) 280
Hpy188III TCNNGA 2 cut(s) 74, 163
Hpy8I GTNNAC 2 cut(s) 30, 244
Hpy99I CGWCG 1 cut(s) 221
HpyAV CCTTC 4 cut(s) 131, 176, 257, 412
HpyCH4III ACNGT 1 cut(s) 254
HpyF3I CTNAG 1 cut(s) 34
Kzo9I GATC 3 cut(s) 213, 384, 427
LmnI GCTCC 1 cut(s) 109
LpnPI CCDG 3 cut(s) 224, 357, 393
Lsp1109I GCAGC 2 cut(s) 363, 366
LweI GCATC 3 cut(s) 259, 329, 460
MalI GATC 3 cut(s) 215, 386, 429
MboI GATC 3 cut(s) 213, 384, 427
MboII GAAGA 2 cut(s) 178, 404
MlsI TGGCCA 1 cut(s) 461
MluCI AATT 1 cut(s) 129
MluNI TGGCCA 1 cut(s) 461
MlyI GAGTC 1 cut(s) 35
MmeI TCCRAC 1 cut(s) 133
MnlI CCTC 5 cut(s) 43, 98, 140, 326, 388
Mox20I TGGCCA 1 cut(s) 461
MscI TGGCCA 1 cut(s) 461
MseI TTAA 3 cut(s) 117, 309, 402
Msp20I TGGCCA 1 cut(s) 461
MspI CCGG 1 cut(s) 211
NdeII GATC 3 cut(s) 213, 384, 427
NlaIV GGNNCC 2 cut(s) 157, 337
PkrI GCNGC 2 cut(s) 353, 356
PleI GAGTC 1 cut(s) 34
PpsI GAGTC 1 cut(s) 34
PspN4I GGNNCC 2 cut(s) 157, 337
RsaI GTAC 1 cut(s) 245
RsaNI GTAC 1 cut(s) 244
SaqAI TTAA 3 cut(s) 117, 309, 402
SatI GCNGC 2 cut(s) 352, 355
Sau3AI GATC 3 cut(s) 213, 384, 427
SchI GAGTC 1 cut(s) 35
SfaNI GCATC 3 cut(s) 259, 329, 460
SfcI CTRYAG 1 cut(s) 250
Sse9I AATT 1 cut(s) 129
TaaI ACNGT 1 cut(s) 254
TaqI TCGA 1 cut(s) 216
TasI AATT 1 cut(s) 129
TatI WGTACW 1 cut(s) 243
Tru1I TTAA 3 cut(s) 117, 309, 402
Tru9I TTAA 3 cut(s) 117, 309, 402
TscAI CASTG 1 cut(s) 430
TseI GCWGC 2 cut(s) 351, 354
TspRI CASTG 1 cut(s) 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.