Prupe.1G133100_v2.0.a1

Heme-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Forward (+)
10534992 .. 10535640
649 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G133100.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 420 bp
ATGGCGGTGATGTGGCGCAGATCGGGAGAGCTCTCGGTGATTTGCTCGGCTCCAAGACCATGGGCTTTTGATCAATGGCTGTTTGAGTACATTCAAGGGAAGAACAAGTACGGAGAGAAAATAGAGATGACTGCCCCAGTGCTCAGTGAAGTTTCACCAAGCGATGGACCCTTTTGTGAATCTTCATTTGTGGTGAGCTTCTATGTGCCAAAGAAGAACCAAGAAAACCCACCACCAGCAGAAGGCCTCCATCTCCAAAAATGGAAAACCACATATGTTGCAGTGAGACAATTCAGTGGGTTTGTATCAGACGACAGCGTTGGAGAAGAAGCTGCTGCCTTGAAGGCCAGTCTTGCAGGTACTGTTTGGTCTGCCGCCATCGAGAAAAGCCATGCAGCTGATCATACTTCAGTTTATACT
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SOUL

Protein Analysis

140

Amino Acids

15.49

Weight (kDa)

5.59

Isoelectric Point (pI)

49.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 347
AccB7I CCANNNNNTGG 1 cut(s) 164
AciI CCGC 2 cut(s) 5, 375
AcuI CTGAAG 1 cut(s) 393
AfaI GTAC 3 cut(s) 89, 110, 361
AfiI CCNNNNNNNGG 2 cut(s) 164, 242
AgsI TTSAA 2 cut(s) 95, 343
AluBI AGCT 4 cut(s) 31, 198, 332, 398
AluI AGCT 4 cut(s) 31, 198, 332, 398
Alw21I GWGCWC 2 cut(s) 33, 144
Alw26I GTCTC 1 cut(s) 280
AlwNI CAGNNNCTG 1 cut(s) 362
AoxI GGCC 2 cut(s) 244, 345
ApeKI GCWGC 3 cut(s) 332, 335, 395
AspLEI GCGC 1 cut(s) 18
AspS9I GGNCC 1 cut(s) 167
AsuHPI GGTGA 4 cut(s) 19, 49, 147, 205
AvaII GGWCC 1 cut(s) 167
BanII GRGCYC 1 cut(s) 33
BarI GAAGNNNNNNTAC 2 cut(s) 92, 124
Bbv12I GWGCWC 2 cut(s) 33, 144
BbvI GCAGC 3 cut(s) 319, 322, 407
BccI CCATC 3 cut(s) 158, 258, 386
BclI TGATCA 2 cut(s) 70, 400
BcoDI GTCTC 1 cut(s) 280
BfuAI ACCTGC 1 cut(s) 347
BglI GCCNNNNNGGC 1 cut(s) 344
BisI GCNGC 4 cut(s) 333, 336, 375, 396
BlsI GCNGC 4 cut(s) 334, 337, 376, 397
Bme18I GGWCC 1 cut(s) 167
BmgT120I GGNCC 1 cut(s) 167
BmiI GGNNCC 2 cut(s) 51, 169
BmrI ACTGGG 1 cut(s) 131
BmuI ACTGGG 1 cut(s) 131
BsaJI CCNNGG 1 cut(s) 59
Bsc4I CCNNNNNNNGG 2 cut(s) 164, 242
Bse1I ACTGG 2 cut(s) 137, 348
BseDI CCNNGG 1 cut(s) 59
BseLI CCNNNNNNNGG 2 cut(s) 164, 242
BseMII CTCAG 1 cut(s) 157
BseNI ACTGG 2 cut(s) 137, 348
BseXI GCAGC 3 cut(s) 319, 322, 407
BshFI GGCC 2 cut(s) 246, 347
BsiHKAI GWGCWC 2 cut(s) 33, 144
BslI CCNNNNNNNGG 2 cut(s) 164, 242
BsmAI GTCTC 1 cut(s) 280
BsnI GGCC 2 cut(s) 246, 347
Bsp1286I GDGCHC 2 cut(s) 33, 144
Bsp143I GATC 3 cut(s) 20, 70, 400
Bsp19I CCATGG 1 cut(s) 59
BspACI CCGC 2 cut(s) 5, 375
BspANI GGCC 2 cut(s) 246, 347
BspCNI CTCAG 1 cut(s) 156
BspLI GGNNCC 2 cut(s) 51, 169
BspMI ACCTGC 1 cut(s) 347
BsrI ACTGG 2 cut(s) 137, 348
BssECI CCNNGG 1 cut(s) 59
BssMI GATC 3 cut(s) 20, 70, 400
BssT1I CCWWGG 1 cut(s) 59
Bst4CI ACNGT 1 cut(s) 364
BstDEI CTNAG 1 cut(s) 143
BstDSI CCRYGG 1 cut(s) 59
BstHHI GCGC 1 cut(s) 18
BstKTI GATC 3 cut(s) 23, 73, 403
BstMAI GTCTC 1 cut(s) 280
BstMBI GATC 3 cut(s) 20, 70, 400
BstMWI GCNNNNNNNGC 2 cut(s) 344, 353
BstV1I GCAGC 3 cut(s) 319, 322, 407
BstXI CCANNNNNNTGG 1 cut(s) 60
BsuRI GGCC 2 cut(s) 246, 347
BtgI CCRYGG 1 cut(s) 59
BtgZI GCGATG 1 cut(s) 177
BtsI GCAGTG 1 cut(s) 288
BtsIMutI CAGTG 4 cut(s) 144, 151, 288, 301
BveI ACCTGC 1 cut(s) 347
CaiI CAGNNNCTG 1 cut(s) 362
CfoI GCGC 1 cut(s) 18
Cfr13I GGNCC 1 cut(s) 167
Csp6I GTAC 3 cut(s) 88, 109, 360
CspCI CAANNNNNGTGG 2 cut(s) 259, 294
CviAII CATG 2 cut(s) 60, 392
CviQI GTAC 3 cut(s) 88, 109, 360
DdeI CTNAG 1 cut(s) 143
DpnI GATC 3 cut(s) 22, 72, 402
DpnII GATC 3 cut(s) 20, 70, 400
Ecl136II GAGCTC 1 cut(s) 31
Eco130I CCWWGG 1 cut(s) 59
Eco147I AGGCCT 1 cut(s) 246
Eco24I GRGCYC 1 cut(s) 33
Eco47I GGWCC 1 cut(s) 167
Eco53kI GAGCTC 1 cut(s) 31
Eco57I CTGAAG 1 cut(s) 393
EcoICRI GAGCTC 1 cut(s) 31
EcoT14I CCWWGG 1 cut(s) 59
EcoT38I GRGCYC 1 cut(s) 33
ErhI CCWWGG 1 cut(s) 59
FaeI CATG 2 cut(s) 63, 395
FaiI YATR 7 cut(s) 61, 204, 274, 276, 393, 405, 417
FatI CATG 2 cut(s) 59, 391
FauNDI CATATG 1 cut(s) 274
FbaI TGATCA 2 cut(s) 70, 400
Fnu4HI GCNGC 4 cut(s) 333, 336, 375, 396
FriOI GRGCYC 1 cut(s) 33
Fsp4HI GCNGC 4 cut(s) 333, 336, 375, 396
GlaI GCGC 1 cut(s) 17
GluI GCNGC 4 cut(s) 333, 336, 375, 396
HaeIII GGCC 2 cut(s) 246, 347
HhaI GCGC 1 cut(s) 18
Hin1II CATG 2 cut(s) 63, 395
Hin6I GCGC 1 cut(s) 16
HinP1I GCGC 1 cut(s) 16
HinfI GANTC 1 cut(s) 179
HphI GGTGA 4 cut(s) 19, 49, 147, 205
Hpy188I TCNGA 1 cut(s) 310
Hpy188III TCNNGA 2 cut(s) 24, 382
HpyAV CCTTC 2 cut(s) 236, 337
HpyCH4III ACNGT 1 cut(s) 364
HpyCH4V TGCA 3 cut(s) 281, 356, 395
HpyF10VI GCNNNNNNNGC 2 cut(s) 344, 353
HpyF3I CTNAG 1 cut(s) 143
Hsp92II CATG 2 cut(s) 63, 395
HspAI GCGC 1 cut(s) 16
Ksp22I TGATCA 2 cut(s) 70, 400
Kzo9I GATC 3 cut(s) 20, 70, 400
LmnI GCTCC 1 cut(s) 55
LpnPI CCDG 4 cut(s) 150, 249, 342, 361
Lsp1109I GCAGC 3 cut(s) 319, 322, 407
MalI GATC 3 cut(s) 22, 72, 402
MboI GATC 3 cut(s) 20, 70, 400
MboII GAAGA 4 cut(s) 112, 174, 226, 338
MhlI GDGCHC 2 cut(s) 33, 144
MluCI AATT 1 cut(s) 290
MmeI TCCRAC 1 cut(s) 301
MnlI CCTC 1 cut(s) 257
MspA1I CMGCKG 1 cut(s) 398
MwoI GCNNNNNNNGC 2 cut(s) 344, 353
NcoI CCATGG 1 cut(s) 59
NdeI CATATG 1 cut(s) 274
NdeII GATC 3 cut(s) 20, 70, 400
NlaIII CATG 2 cut(s) 63, 395
NlaIV GGNNCC 2 cut(s) 51, 169
NmeAIII GCCGAG 1 cut(s) 26
PceI AGGCCT 1 cut(s) 246
PfeI GAWTC 1 cut(s) 179
PflMI CCANNNNNTGG 1 cut(s) 164
PkrI GCNGC 4 cut(s) 334, 337, 376, 397
Psp124BI GAGCTC 1 cut(s) 33
PspN4I GGNNCC 2 cut(s) 51, 169
PspPI GGNCC 1 cut(s) 167
PstNI CAGNNNCTG 1 cut(s) 362
PvuII CAGCTG 1 cut(s) 398
RsaI GTAC 3 cut(s) 89, 110, 361
RsaNI GTAC 3 cut(s) 88, 109, 360
SacI GAGCTC 1 cut(s) 33
SatI GCNGC 4 cut(s) 333, 336, 375, 396
Sau3AI GATC 3 cut(s) 20, 70, 400
Sau96I GGNCC 1 cut(s) 167
SduI GDGCHC 2 cut(s) 33, 144
SetI ASST 5 cut(s) 33, 200, 334, 361, 400
SinI GGWCC 1 cut(s) 167
Sse9I AATT 1 cut(s) 290
SseBI AGGCCT 1 cut(s) 246
SsiI CCGC 2 cut(s) 5, 375
SstI GAGCTC 1 cut(s) 33
StuI AGGCCT 1 cut(s) 246
StyI CCWWGG 1 cut(s) 59
TaaI ACNGT 1 cut(s) 364
TaqI TCGA 1 cut(s) 381
TasI AATT 1 cut(s) 290
TatI WGTACW 1 cut(s) 87
TauI GCSGC 1 cut(s) 377
TfiI GAWTC 1 cut(s) 179
TscAI CASTG 4 cut(s) 144, 151, 288, 301
TseI GCWGC 3 cut(s) 332, 335, 395
TspDTI ATGAA 1 cut(s) 174
TspGWI ACGGA 1 cut(s) 126
TspRI CASTG 4 cut(s) 144, 151, 288, 301
Van91I CCANNNNNTGG 1 cut(s) 164
VpaK11BI GGWCC 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.