Prupe.1G136300_v2.0.a1

spliceosomal snRNP assembly

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Forward (+)
10710488 .. 10710715
228 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G136300.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 228 bp
ATGGCAAGCACCAAAGTTAAGAGGATTATGACTCAACCCATTAACTTGATTTCTAGGTTTCTTCAACATAAAGCTCGCACTCATATTTGGCTCTTTGAGCAAAAGGACCTTAGGATTAAAGGACGAATCATTGATTTTGATGAGTACATGAATTTGGTTCTCGATGAAGCTGAAGAAGTCAGCATTAAGAAAAAACAAGAAAGTCAATGGGAAAGATTCTTCAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000245 GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005683 GO:0005684 GO:0005685 GO:0005686 GO:0005687 GO:0005689 GO:0005697 GO:0005737 GO:0005829 GO:0006139 GO:0006351 GO:0006353 GO:0006366 GO:0006369 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006810 GO:0006913 GO:0008150 GO:0008152 GO:0008334 GO:0008380 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031974 GO:0031981 GO:0032501 GO:0032774 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0034708 GO:0034709 GO:0034715 GO:0034719 GO:0035770 GO:0036464 GO:0042303 GO:0042633 GO:0043021 GO:0043170 GO:0043186 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045495 GO:0046483 GO:0046540 GO:0046907 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060293 GO:0065003 GO:0070013 GO:0070990 GO:0071007 GO:0071011 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097525 GO:0097526 GO:0097659 GO:0120114 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234 GO:1990446 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
LSM

Protein Analysis

76

Amino Acids

9.14

Weight (kDa)

9.45

Isoelectric Point (pI)

56.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 151
AcuI CTGAAG 2 cut(s) 192, 205
AfaI GTAC 1 cut(s) 146
AgsI TTSAA 1 cut(s) 65
AluBI AGCT 2 cut(s) 74, 170
AluI AGCT 2 cut(s) 74, 170
ApoI RAATTY 1 cut(s) 151
AspS9I GGNCC 1 cut(s) 106
AvaII GGWCC 1 cut(s) 106
AxyI CCTNAGG 1 cut(s) 110
BfaI CTAG 1 cut(s) 54
Bme18I GGWCC 1 cut(s) 106
BmgT120I GGNCC 1 cut(s) 106
Bse21I CCTNAGG 1 cut(s) 110
BstC8I GCNNGC 2 cut(s) 7, 76
BstDEI CTNAG 1 cut(s) 110
BstMWI GCNNNNNNNGC 1 cut(s) 97
Bsu36I CCTNAGG 1 cut(s) 110
Cac8I GCNNGC 2 cut(s) 7, 76
Cfr13I GGNCC 1 cut(s) 106
Csp6I GTAC 1 cut(s) 145
CviAII CATG 1 cut(s) 148
CviJI RGCY 3 cut(s) 74, 91, 170
CviKI_1 RGCY 3 cut(s) 74, 91, 170
CviQI GTAC 1 cut(s) 145
DdeI CTNAG 1 cut(s) 110
Eco47I GGWCC 1 cut(s) 106
Eco57I CTGAAG 2 cut(s) 192, 205
Eco81I CCTNAGG 1 cut(s) 110
EcoO109I RGGNCCY 1 cut(s) 106
FaeI CATG 1 cut(s) 151
FaiI YATR 4 cut(s) 29, 69, 84, 149
FatI CATG 1 cut(s) 147
FspBI CTAG 1 cut(s) 54
Hin1II CATG 1 cut(s) 151
HinfI GANTC 3 cut(s) 31, 126, 216
Hpy188III TCNNGA 1 cut(s) 161
HpyF10VI GCNNNNNNNGC 1 cut(s) 97
HpyF3I CTNAG 1 cut(s) 110
Hsp92II CATG 1 cut(s) 151
MaeI CTAG 1 cut(s) 54
MboII GAAGA 3 cut(s) 53, 185, 211
MluCI AATT 1 cut(s) 151
MlyI GAGTC 1 cut(s) 25
MnlI CCTC 1 cut(s) 15
MseI TTAA 4 cut(s) 18, 42, 117, 186
MwoI GCNNNNNNNGC 1 cut(s) 97
NlaIII CATG 1 cut(s) 151
PfeI GAWTC 2 cut(s) 126, 216
PleI GAGTC 1 cut(s) 25
PpsI GAGTC 1 cut(s) 25
PpuMI RGGWCCY 1 cut(s) 106
Psp5II RGGWCCY 1 cut(s) 106
PspPI GGNCC 1 cut(s) 106
PspPPI RGGWCCY 1 cut(s) 106
RsaI GTAC 1 cut(s) 146
RsaNI GTAC 1 cut(s) 145
SaqAI TTAA 4 cut(s) 18, 42, 117, 186
Sau96I GGNCC 1 cut(s) 106
SchI GAGTC 1 cut(s) 25
SetI ASST 4 cut(s) 59, 76, 111, 172
SgeI CNNG 7 cut(s) 18, 58, 66, 87, 160, 173, 209
SinI GGWCC 1 cut(s) 106
Sse9I AATT 1 cut(s) 151
SspMI CTAG 1 cut(s) 54
TaqI TCGA 1 cut(s) 162
TasI AATT 1 cut(s) 151
TatI WGTACW 1 cut(s) 144
TfiI GAWTC 2 cut(s) 126, 216
Tru1I TTAA 4 cut(s) 18, 42, 117, 186
Tru9I TTAA 4 cut(s) 18, 42, 117, 186
TspDTI ATGAA 2 cut(s) 164, 180
VpaK11BI GGWCC 1 cut(s) 106
XapI RAATTY 1 cut(s) 151
XspI CTAG 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.