Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

10843732 .. 10845723

Gene Structure 1992 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G138600.1_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGTCGAAGCGTGATAAAGATGTCCCCGCCAACAAGAAGTTACGTTTGTCCCTTTACTCCATAGTTCAAGATTATCTTCAAGGAGACGTATCAACTCAACCAGAGTTGCAACCTAACATTGATATCGAATTCATCGAGAAGAACATTAAGGATAATGAGTCGGATTTTGCCCCTCTAAGTAAGAGTTATACAGTCTTCAAGCATCACTTAGGCCGTAGGTTGCTGATCAAGCATAATACAAAACGTTCTTCCTCTGGCACAAATTCAGATTTATGCATGTATATCCTTTTCGTTTTGTTGACGATCTATAAGCAATGCTTCATTGGTAAATCACAATGCATAAAAAAGCGTGCGATTTATTATACTGATACTAACCAATTTAAGAGTGAGTACGATGCATATGGAGTAATTGATTATGTATTTTGCGTGCTAAGCCACATAAGGCTGAGTCTTAAGGTCATTTCCGACCTAATAGGTAAGGTTATTGGGCAATTTACCTTCGTGTGCGATGATACTCCTCACGATTGTTCTTCGAGTGCTGAGGAGATCGCGTCTTGTCATCGTATAGTCCGTACTAGTTTCAACAGTTGTGATGCATCATTCATCTTATTAGTTGAGAAGAATACGGTGTTTCACGGTTCAGCCCAGGTGAAATTTCATGAGAATGCTAAATGCATTATGGTGTCCGACAAAGGATATGGTGACAGATCTACCAAGGTATTCTTGAAAAAGCTTTATTATGACTTAAGGCGTCCCGTAATAGCCATTGTCGATTGCAATCCATATGGGCTTCAAATTAACTTACATATTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000706 GO:0000729 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0008150 GO:0008152 GO:0009987 GO:0022402 GO:0022414 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0050896 GO:0051321 GO:0051716 GO:0071704 GO:0090304 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

TP6A_N

Protein Analysis

272

Amino Acids

31.03

Weight (kDa)

8.79

Isoelectric Point (pI)

49.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	551
AciI	CCGC	1 cut(s)	27
AclI	AACGTT	1 cut(s)	244
AcsI	RAATTY	3 cut(s)	128, 262, 653
AcyI	GRCGYC	1 cut(s)	751
AfaI	GTAC	2 cut(s)	392, 574
AflII	CTTAAG	2 cut(s)	452, 745
AgsI	TTSAA	7 cut(s)	68, 80, 199, 583, 727, 794, 812
AhlI	ACTAGT	1 cut(s)	575
AjnI	CCWGG	1 cut(s)	645
AluBI	AGCT	1 cut(s)	733
AluI	AGCT	1 cut(s)	733
Alw26I	GTCTC	1 cut(s)	78
AoxI	GGCC	1 cut(s)	211
ApoI	RAATTY	3 cut(s)	128, 262, 653
AsuHPI	GGTGA	2 cut(s)	661, 713
BbsI	GAAGAC	1 cut(s)	187
BbvCI	CCTCAGC	1 cut(s)	540
BceAI	ACGGC	1 cut(s)	198
BciT130I	CCWGG	1 cut(s)	647
BclI	TGATCA	1 cut(s)	225
BcoDI	GTCTC	1 cut(s)	78
BcuI	ACTAGT	1 cut(s)	575
BfaI	CTAG	1 cut(s)	576
BfrI	CTTAAG	2 cut(s)	452, 745
BglII	AGATCT	1 cut(s)	707
BlpI	GCTNAGC	1 cut(s)	431
Bme1390I	CCNGG	1 cut(s)	647
BmrFI	CCNGG	1 cut(s)	647
BmsI	GCATC	4 cut(s)	211, 385, 583, 605
BpiI	GAAGAC	1 cut(s)	187
Bpu10I	CCTNAGC	1 cut(s)	540
Bpu1102I	GCTNAGC	1 cut(s)	431
BsaBI	GATNNNNATC	1 cut(s)	777
BsaHI	GRCGYC	1 cut(s)	751
BsaJI	CCNNGG	2 cut(s)	645, 714
BsaXI	ACNNNNNCTCC	2 cut(s)	536, 566
Bse3DI	GCAATG	1 cut(s)	320
Bse8I	GATNNNNATC	1 cut(s)	777
BseBI	CCWGG	1 cut(s)	647
BseDI	CCNNGG	2 cut(s)	645, 714
BseJI	GATNNNNATC	1 cut(s)	777
BseMI	GCAATG	1 cut(s)	320
BseMII	CTCAG	2 cut(s)	437, 531
BseRI	GAGGAG	2 cut(s)	507, 557
Bsh1236I	CGCG	1 cut(s)	551
BshFI	GGCC	1 cut(s)	213
BslFI	GGGAC	3 cut(s)	8, 34, 738
BsmAI	GTCTC	1 cut(s)	78
BsmBI	CGTCTC	1 cut(s)	78
BsmFI	GGGAC	3 cut(s)	8, 34, 738
BsmI	GAATGC	1 cut(s)	670
BsnI	GGCC	1 cut(s)	213
Bsp143I	GATC	4 cut(s)	225, 303, 546, 707
Bsp1720I	GCTNAGC	1 cut(s)	431
BspACI	CCGC	1 cut(s)	27
BspANI	GGCC	1 cut(s)	213
BspCNI	CTCAG	2 cut(s)	438, 532
BspFNI	CGCG	1 cut(s)	551
BspHI	TCATGA	1 cut(s)	658
BspTI	CTTAAG	2 cut(s)	452, 745
BsrDI	GCAATG	1 cut(s)	320
BssECI	CCNNGG	2 cut(s)	645, 714
BssMI	GATC	4 cut(s)	225, 303, 546, 707
BssNI	GRCGYC	1 cut(s)	751
BssT1I	CCWWGG	1 cut(s)	714
Bst2UI	CCWGG	1 cut(s)	647
Bst4CI	ACNGT	4 cut(s)	193, 587, 628, 638
BstACI	GRCGYC	1 cut(s)	751
BstAFI	CTTAAG	2 cut(s)	452, 745
BstC8I	GCNNGC	2 cut(s)	351, 428
BstDEI	CTNAG	5 cut(s)	176, 208, 431, 446, 540
BstFNI	CGCG	1 cut(s)	551
BstKTI	GATC	4 cut(s)	228, 306, 549, 710
BstMAI	GTCTC	1 cut(s)	78
BstMBI	GATC	4 cut(s)	225, 303, 546, 707
BstMWI	GCNNNNNNNGC	2 cut(s)	229, 432
BstNI	CCWGG	1 cut(s)	647
BstNSI	RCATGY	1 cut(s)	280
BstSCI	CCNGG	1 cut(s)	645
BstUI	CGCG	1 cut(s)	551
BstV2I	GAAGAC	1 cut(s)	187
BstX2I	RGATCY	1 cut(s)	707
BstYI	RGATCY	1 cut(s)	707
BsuRI	GGCC	1 cut(s)	213
BtgZI	GCGATG	1 cut(s)	522
Cac8I	GCNNGC	2 cut(s)	351, 428
CciI	TCATGA	1 cut(s)	658
CseI	GACGC	2 cut(s)	540, 740
Csp6I	GTAC	2 cut(s)	391, 573
CviAII	CATG	2 cut(s)	277, 659
CviJI	RGCY	7 cut(s)	213, 435, 445, 644, 733, 764, 790
CviKI_1	RGCY	7 cut(s)	213, 435, 445, 644, 733, 764, 790
CviQI	GTAC	2 cut(s)	391, 573
DdeI	CTNAG	5 cut(s)	176, 208, 431, 446, 540
DpnI	GATC	4 cut(s)	227, 305, 548, 709
DpnII	GATC	4 cut(s)	225, 303, 546, 707
Eco130I	CCWWGG	1 cut(s)	714
Eco32I	GATATC	1 cut(s)	124
EcoRI	GAATTC	1 cut(s)	128
EcoRII	CCWGG	1 cut(s)	645
EcoRV	GATATC	1 cut(s)	124
EcoT14I	CCWWGG	1 cut(s)	714
EcoT22I	ATGCAT	5 cut(s)	278, 341, 400, 598, 677
ErhI	CCWWGG	1 cut(s)	714
Esp3I	CGTCTC	1 cut(s)	78
FaeI	CATG	2 cut(s)	280, 662
FalI	AAGNNNNNCTT	8 cut(s)	60, 92, 191, 223, 302, 334, 707, 739
FaqI	GGGAC	3 cut(s)	8, 34, 738
FatI	CATG	2 cut(s)	276, 658
FauI	CCCGC	1 cut(s)	34
FauNDI	CATATG	2 cut(s)	400, 784
FbaI	TGATCA	1 cut(s)	225
FspBI	CTAG	1 cut(s)	576
HaeIII	GGCC	1 cut(s)	213
HgaI	GACGC	2 cut(s)	540, 740
Hin1I	GRCGYC	1 cut(s)	751
Hin1II	CATG	2 cut(s)	280, 662
HincII	GTYRAC	1 cut(s)	300
HindII	GTYRAC	1 cut(s)	300
HindIII	AAGCTT	1 cut(s)	731
HinfI	GANTC	2 cut(s)	158, 448
HphI	GGTGA	2 cut(s)	661, 713
Hpy166II	GTNNAC	1 cut(s)	300
Hpy188I	TCNGA	4 cut(s)	163, 268, 466, 688
Hpy188III	TCNNGA	5 cut(s)	68, 136, 521, 659, 724
Hpy8I	GTNNAC	1 cut(s)	300
HpyAV	CCTTC	1 cut(s)	508
HpyCH4III	ACNGT	4 cut(s)	193, 587, 628, 638
HpyCH4IV	ACGT	3 cut(s)	43, 87, 244
HpyCH4V	TGCA	7 cut(s)	109, 276, 339, 398, 596, 675, 777
HpyF10VI	GCNNNNNNNGC	2 cut(s)	229, 432
HpyF3I	CTNAG	5 cut(s)	176, 208, 431, 446, 540
HpySE526I	ACGT	3 cut(s)	43, 87, 244
Hsp92I	GRCGYC	1 cut(s)	751
Hsp92II	CATG	2 cut(s)	280, 662
Ksp22I	TGATCA	1 cut(s)	225
Kzo9I	GATC	4 cut(s)	225, 303, 546, 707
LpnPI	CCDG	4 cut(s)	114, 240, 632, 659
LweI	GCATC	4 cut(s)	211, 385, 583, 605
MaeI	CTAG	1 cut(s)	576
MaeII	ACGT	3 cut(s)	43, 87, 244
MaeIII	GTNAC	2 cut(s)	39, 701
MalI	GATC	4 cut(s)	227, 305, 548, 709
MboI	GATC	4 cut(s)	225, 303, 546, 707
MboII	GAAGA	6 cut(s)	68, 151, 187, 240, 522, 631
MflI	RGATCY	1 cut(s)	707
MluCI	AATT	7 cut(s)	128, 262, 377, 408, 491, 653, 795
MlyI	GAGTC	2 cut(s)	167, 457
MmeI	TCCRAC	3 cut(s)	141, 489, 711
MnlI	CCTC	4 cut(s)	183, 262, 528, 535
Mph1103I	ATGCAT	5 cut(s)	278, 341, 400, 598, 677
MseI	TTAA	5 cut(s)	147, 381, 453, 746, 798
MslI	CAYNNNNRTG	2 cut(s)	663, 680
MspCI	CTTAAG	2 cut(s)	452, 745
MspR9I	CCNGG	1 cut(s)	647
Mva1269I	GAATGC	1 cut(s)	670
MvaI	CCWGG	1 cut(s)	647
MvnI	CGCG	1 cut(s)	551
MwoI	GCNNNNNNNGC	2 cut(s)	229, 432
NdeI	CATATG	2 cut(s)	400, 784
NdeII	GATC	4 cut(s)	225, 303, 546, 707
NlaIII	CATG	2 cut(s)	280, 662
NmuCI	GTSAC	1 cut(s)	701
NsiI	ATGCAT	5 cut(s)	278, 341, 400, 598, 677
NspI	RCATGY	1 cut(s)	280
PagI	TCATGA	1 cut(s)	658
PcsI	WCGNNNNNNNCGW	2 cut(s)	132, 568
PctI	GAATGC	1 cut(s)	670
PleI	GAGTC	2 cut(s)	166, 456
PpsI	GAGTC	2 cut(s)	166, 456
Psp1406I	AACGTT	1 cut(s)	244
Psp6I	CCWGG	1 cut(s)	645
PspGI	CCWGG	1 cut(s)	645
PsuI	RGATCY	1 cut(s)	707
RsaI	GTAC	2 cut(s)	392, 574
RsaNI	GTAC	2 cut(s)	391, 573
RseI	CAYNNNNRTG	2 cut(s)	663, 680
SaqAI	TTAA	5 cut(s)	147, 381, 453, 746, 798
Sau3AI	GATC	4 cut(s)	225, 303, 546, 707
SchI	GAGTC	2 cut(s)	167, 457
ScrFI	CCNGG	1 cut(s)	647
SfaNI	GCATC	4 cut(s)	211, 385, 583, 605
SmiMI	CAYNNNNRTG	2 cut(s)	663, 680
SmlI	CTYRAG	2 cut(s)	452, 745
SmoI	CTYRAG	2 cut(s)	452, 745
SpeI	ACTAGT	1 cut(s)	575
Sse9I	AATT	7 cut(s)	128, 262, 377, 408, 491, 653, 795
SsiI	CCGC	1 cut(s)	27
SspMI	CTAG	1 cut(s)	576
StyD4I	CCNGG	1 cut(s)	645
StyI	CCWWGG	1 cut(s)	714
TaaI	ACNGT	4 cut(s)	193, 587, 628, 638
TaiI	ACGT	3 cut(s)	46, 90, 247
TaqI	TCGA	5 cut(s)	5, 126, 135, 533, 771
TasI	AATT	7 cut(s)	128, 262, 377, 408, 491, 653, 795
Tru1I	TTAA	5 cut(s)	147, 381, 453, 746, 798
Tru9I	TTAA	5 cut(s)	147, 381, 453, 746, 798
TseFI	GTSAC	1 cut(s)	701
Tsp45I	GTSAC	1 cut(s)	701
TspDTI	ATGAA	4 cut(s)	121, 310, 592, 647
TspGWI	ACGGA	1 cut(s)	560
Vha464I	CTTAAG	2 cut(s)	452, 745
XapI	RAATTY	3 cut(s)	128, 262, 653
XceI	RCATGY	1 cut(s)	280
XspI	CTAG	1 cut(s)	576
Zsp2I	ATGCAT	5 cut(s)	278, 341, 400, 598, 677

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.