Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

11433000 .. 11434910

Gene Structure 1911 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G145700.1_v2.0.a1.CDS.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGGCGACCATATCCATAAGCTTCTGTCCGTACGCTATGGCTCGCCCCAGGGTCCCACGAACTCGCATACCTCCGGTGAAGAAGCAGACAGTACGGAGCCCTAACCCTAACCCTAGCCATAAGCTGAAGGCTCGAACTGGCGCCAAACAGTTGTCATCCATCGGAGTCGAAGCCACCACCTACACTGTTGAGAAGGAGATTGATAATTTAAGCAGTGAAGAGGAGGAGGAGGAAGAAGAAGAAGAAGAAGAAAAGGGCTTAGATGGTCATTTGGGGTTGAATTATGGTCAATTTGAGGTCTTTGAGGGAACTTATGATTCTGAACTGGACGAGGAAGATGATGATAGCGATATTGAGGGGTTTAGTGATGACAAATTGGAAAGTGTTTATCAAAACGACGACGGTGAATTGCTAGGGTTTAAGGAGGGCGAAGCTGTGAATTTATCAGATAATGAGGTCAAATTGGAGGAAGGGGAAGTGAAGGAGAAGGGAGTACCAGCAGTAATGCGGTGTTTCGACCGCGCAAAAATCTTCGCGAAGGCAGGGGACGGAGGGAACGGCGTCGTCGCAATGCGGCGTGAAAAGTTCGTGCCTTTGGGCGGTCCGTCAGGCGGTAACGGTGGGCGAGGAGGTAATGTGTATATGGAAGTAGATGGTTCGATGAATTCACTTCTGCCATTTCGAAACAGCGTTCATTTTCGGGCAGGGAGAGGTGATCATGGAAGAGGGCAGTCCCAGAATGGGGCTAAGGGAGAGGACGTCGTGATTAAAGTAGCTCCTGGGACTGTTGTTCTAGAGGCCGTGAAGGAGGAGGTGCTTCTGGAGTTATTGCATCCCGGGCAGCGTCCATTGTTGTTGCCGGGAGGAAGAGGCGTGAGAGGGAACGCATCGTTTAAGTCGGGGACGAATAAGGTGCCAAGGATTGCTGAGAATGGTGCAGAGGGTCCTGAAATGTGGTTGGAGCTGGAGCTAAAGCTAGTTGCAGATATTGGAATAGTGGGCGCCCCAAATGCAGGGAAAAGCACACTTTTGAGTGTGATAAGTGCTGCTCAGTCAACAATAGCAAATTATCCCTTCACAACTTTACTTCCTAATCTGGGTGTGGTTTCTTTTGACTATGATTCTACAATGGTAGTAGCAGATCTGCCAGGTTTACTTGAAGAAGCACACCGGGGTTTTGGTTTGGGACATGAGTTTCTACGGCACACTGAGAGGTGTTCTGCCTGGTATAAGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009528 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009657 GO:0009658 GO:0009668 GO:0009706 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010027 GO:0010154 GO:0010467 GO:0016020 GO:0016043 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019866 GO:0022414 GO:0022613 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0042170 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061024 GO:0061458 GO:0071704 GO:0071840 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1967 GTP1_OBG MMR_HSR1

Protein Analysis

413

Amino Acids

44.6

Weight (kDa)

4.87

Isoelectric Point (pI)

39.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	762
AccB1I	GGYRCC	3 cut(s)	140, 913, 1001
AccII	CGCG	2 cut(s)	522, 536
AciI	CCGC	5 cut(s)	508, 520, 574, 600, 612
AcsI	RAATTY	2 cut(s)	439, 664
AcuI	CTGAAG	1 cut(s)	146
AcyI	GRCGYC	4 cut(s)	141, 561, 759, 1002
AfaI	GTAC	3 cut(s)	32, 93, 495
AfiI	CCNNNNNNNGG	6 cut(s)	599, 611, 741, 742, 1013, 1097
AgsI	TTSAA	2 cut(s)	280, 1160
AjnI	CCWGG	4 cut(s)	47, 778, 1147, 1223
AluBI	AGCT	8 cut(s)	21, 124, 434, 776, 964, 970, 976, 1234
AluI	AGCT	8 cut(s)	21, 124, 434, 776, 964, 970, 976, 1234
Ama87I	CYCGRG	1 cut(s)	836
AoxI	GGCC	1 cut(s)	798
ApeKI	GCWGC	2 cut(s)	841, 1046
ApoI	RAATTY	2 cut(s)	439, 664
AspLEI	GCGC	3 cut(s)	143, 524, 1004
AspS9I	GGNCC	3 cut(s)	52, 602, 944
AsuC2I	CCSGG	4 cut(s)	837, 838, 861, 1172
AsuHPI	GGTGA	3 cut(s)	88, 416, 725
AsuII	TTCGAA	1 cut(s)	682
AvaI	CYCGRG	1 cut(s)	836
AvaII	GGWCC	3 cut(s)	52, 602, 944
BanI	GGYRCC	3 cut(s)	140, 913, 1001
BanII	GRGCYC	1 cut(s)	101
BbvI	GCAGC	2 cut(s)	853, 1033
BccI	CCATC	3 cut(s)	167, 257, 647
BceAI	ACGGC	3 cut(s)	574, 785, 1217
BcgI	CGANNNNNNTGC	2 cut(s)	895, 929
BciT130I	CCWGG	4 cut(s)	49, 780, 1149, 1225
BclI	TGATCA	1 cut(s)	715
BcnI	CCSGG	4 cut(s)	837, 838, 861, 1172
BfaI	CTAG	4 cut(s)	114, 413, 794, 977
BfoI	RGCGCY	2 cut(s)	144, 1005
BglII	AGATCT	1 cut(s)	1141
BisI	GCNGC	3 cut(s)	575, 842, 1047
BlsI	GCNGC	3 cut(s)	576, 843, 1048
Bme1390I	CCNGG	8 cut(s)	49, 780, 837, 838, 861, 1149, 1172, 1225
Bme18I	GGWCC	3 cut(s)	52, 602, 944
BmeT110I	CYCGRG	1 cut(s)	836
BmgT120I	GGNCC	3 cut(s)	52, 602, 944
BmiI	GGNNCC	7 cut(s)	53, 54, 98, 142, 915, 945, 1003
BmrFI	CCNGG	8 cut(s)	49, 780, 837, 838, 861, 1149, 1172, 1225
BmsI	GCATC	2 cut(s)	841, 896
BpmI	CTGGAG	2 cut(s)	842, 986
Bpu10I	CCTNAGC	1 cut(s)	747
Bpu14I	TTCGAA	1 cut(s)	682
BpuMI	CCSGG	4 cut(s)	837, 838, 861, 1172
BsaHI	GRCGYC	4 cut(s)	141, 561, 759, 1002
BsaJI	CCNNGG	6 cut(s)	47, 48, 779, 836, 917, 1171
BsaWI	WCCGGW	1 cut(s)	73
BsaXI	ACNNNNNCTCC	4 cut(s)	621, 651, 744, 774
Bsc4I	CCNNNNNNNGG	6 cut(s)	599, 611, 741, 742, 1013, 1097
Bse1I	ACTGG	2 cut(s)	142, 330
Bse3DI	GCAATG	1 cut(s)	576
BseBI	CCWGG	4 cut(s)	49, 780, 1149, 1225
BseDI	CCNNGG	6 cut(s)	47, 48, 779, 836, 917, 1171
BseGI	GGATG	2 cut(s)	155, 832
BseLI	CCNNNNNNNGG	6 cut(s)	599, 611, 741, 742, 1013, 1097
BseMI	GCAATG	1 cut(s)	576
BseMII	CTCAG	3 cut(s)	918, 1064, 1200
BseNI	ACTGG	2 cut(s)	142, 330
BseRI	GAGGAG	5 cut(s)	236, 239, 242, 642, 824
BseXI	GCAGC	2 cut(s)	853, 1033
BsgI	GTGCAG	1 cut(s)	957
Bsh1236I	CGCG	2 cut(s)	522, 536
Bsh1285I	CGRYCG	1 cut(s)	520
BshFI	GGCC	1 cut(s)	800
BshNI	GGYRCC	3 cut(s)	140, 913, 1001
BsiEI	CGRYCG	1 cut(s)	520
BsiHKCI	CYCGRG	1 cut(s)	836
BsiSI	CCGG	4 cut(s)	74, 837, 860, 1171
BsiWI	CGTACG	1 cut(s)	30
BslFI	GGGAC	6 cut(s)	38, 560, 718, 796, 916, 1200
BslI	CCNNNNNNNGG	6 cut(s)	599, 611, 741, 742, 1013, 1097
BsmFI	GGGAC	6 cut(s)	38, 560, 718, 796, 916, 1200
BsnI	GGCC	1 cut(s)	800
BsoBI	CYCGRG	1 cut(s)	836
Bsp119I	TTCGAA	1 cut(s)	682
Bsp1286I	GDGCHC	1 cut(s)	101
Bsp143I	GATC	2 cut(s)	715, 1141
Bsp68I	TCGCGA	1 cut(s)	536
BspACI	CCGC	5 cut(s)	508, 520, 574, 600, 612
BspANI	GGCC	1 cut(s)	800
BspCNI	CTCAG	3 cut(s)	919, 1063, 1201
BspFNI	CGCG	2 cut(s)	522, 536
BspLI	GGNNCC	7 cut(s)	53, 54, 98, 142, 915, 945, 1003
BspT104I	TTCGAA	1 cut(s)	682
BspT107I	GGYRCC	3 cut(s)	140, 913, 1001
BsrDI	GCAATG	1 cut(s)	576
BsrI	ACTGG	2 cut(s)	142, 330
BssECI	CCNNGG	6 cut(s)	47, 48, 779, 836, 917, 1171
BssMI	GATC	2 cut(s)	715, 1141
BssNI	GRCGYC	4 cut(s)	141, 561, 759, 1002
BssT1I	CCWWGG	1 cut(s)	917
Bst2UI	CCWGG	4 cut(s)	49, 780, 1149, 1225
Bst4CI	ACNGT	6 cut(s)	91, 150, 187, 404, 620, 787
Bst6I	CTCTTC	3 cut(s)	213, 718, 862
BstACI	GRCGYC	4 cut(s)	141, 561, 759, 1002
BstBI	TTCGAA	1 cut(s)	682
BstC8I	GCNNGC	1 cut(s)	43
BstDEI	CTNAG	5 cut(s)	259, 747, 927, 1050, 1209
BstF5I	GGATG	2 cut(s)	155, 832
BstFNI	CGCG	2 cut(s)	522, 536
BstH2I	RGCGCY	2 cut(s)	144, 1005
BstHHI	GCGC	3 cut(s)	143, 524, 1004
BstKTI	GATC	2 cut(s)	718, 1144
BstMBI	GATC	2 cut(s)	715, 1141
BstMCI	CGRYCG	1 cut(s)	520
BstMWI	GCNNNNNNNGC	2 cut(s)	838, 1010
BstNI	CCWGG	4 cut(s)	49, 780, 1149, 1225
BstSCI	CCNGG	8 cut(s)	47, 778, 835, 836, 859, 1147, 1170, 1223
BstUI	CGCG	2 cut(s)	522, 536
BstV1I	GCAGC	2 cut(s)	853, 1033
BstX2I	RGATCY	1 cut(s)	1141
BstYI	RGATCY	1 cut(s)	1141
BsuRI	GGCC	1 cut(s)	800
BtsCI	GGATG	2 cut(s)	155, 832
BtsI	GCAGTG	1 cut(s)	220
BtsIMutI	CAGTG	3 cut(s)	183, 220, 1206
BtuMI	TCGCGA	1 cut(s)	536
Cac8I	GCNNGC	1 cut(s)	43
CfoI	GCGC	3 cut(s)	143, 524, 1004
Cfr13I	GGNCC	3 cut(s)	52, 602, 944
Cfr9I	CCCGGG	1 cut(s)	836
CpoI	CGGWCCG	1 cut(s)	602
CseI	GACGC	2 cut(s)	550, 833
Csp6I	GTAC	3 cut(s)	31, 92, 494
CspI	CGGWCCG	1 cut(s)	602
CviAII	CATG	2 cut(s)	719, 1190
CviQI	GTAC	3 cut(s)	31, 92, 494
DdeI	CTNAG	5 cut(s)	259, 747, 927, 1050, 1209
DinI	GGCGCC	2 cut(s)	142, 1003
DpnI	GATC	2 cut(s)	717, 1143
DpnII	GATC	2 cut(s)	715, 1141
Eam1104I	CTCTTC	3 cut(s)	213, 718, 862
EarI	CTCTTC	3 cut(s)	213, 718, 862
Eco130I	CCWWGG	1 cut(s)	917
Eco24I	GRGCYC	1 cut(s)	101
Eco47I	GGWCC	3 cut(s)	52, 602, 944
Eco57I	CTGAAG	1 cut(s)	146
Eco88I	CYCGRG	1 cut(s)	836
EcoO109I	RGGNCCY	2 cut(s)	52, 944
EcoRI	GAATTC	1 cut(s)	664
EcoRII	CCWGG	4 cut(s)	47, 778, 1147, 1223
EcoT14I	CCWWGG	1 cut(s)	917
EcoT38I	GRGCYC	1 cut(s)	101
EgeI	GGCGCC	2 cut(s)	142, 1003
EheI	GGCGCC	2 cut(s)	142, 1003
ErhI	CCWWGG	1 cut(s)	917
FaeI	CATG	2 cut(s)	722, 1193
FaqI	GGGAC	6 cut(s)	38, 560, 718, 796, 916, 1200
FatI	CATG	2 cut(s)	718, 1189
FbaI	TGATCA	1 cut(s)	715
Fnu4HI	GCNGC	3 cut(s)	575, 842, 1047
FokI	GGATG	2 cut(s)	142, 819
FriOI	GRGCYC	1 cut(s)	101
Fsp4HI	GCNGC	3 cut(s)	575, 842, 1047
FspBI	CTAG	4 cut(s)	114, 413, 794, 977
GlaI	GCGC	3 cut(s)	142, 523, 1003
GluI	GCNGC	3 cut(s)	575, 842, 1047
GsuI	CTGGAG	2 cut(s)	842, 986
HaeII	RGCGCY	2 cut(s)	144, 1005
HaeIII	GGCC	1 cut(s)	800
HapII	CCGG	4 cut(s)	74, 837, 860, 1171
HgaI	GACGC	2 cut(s)	550, 833
HhaI	GCGC	3 cut(s)	143, 524, 1004
Hin1I	GRCGYC	4 cut(s)	141, 561, 759, 1002
Hin1II	CATG	2 cut(s)	722, 1193
Hin6I	GCGC	3 cut(s)	141, 522, 1002
HinP1I	GCGC	3 cut(s)	141, 522, 1002
HincII	GTYRAC	1 cut(s)	1056
HindII	GTYRAC	1 cut(s)	1056
HindIII	AAGCTT	1 cut(s)	19
HinfI	GANTC	3 cut(s)	165, 317, 1121
HpaII	CCGG	4 cut(s)	74, 837, 860, 1171
HphI	GGTGA	3 cut(s)	88, 416, 725
Hpy166II	GTNNAC	2 cut(s)	1056, 1154
Hpy188I	TCNGA	3 cut(s)	164, 322, 448
Hpy188III	TCNNGA	5 cut(s)	535, 763, 794, 821, 947
Hpy8I	GTNNAC	2 cut(s)	1056, 1154
Hpy99I	CGWCG	5 cut(s)	401, 404, 566, 569, 764
HpyAV	CCTTC	8 cut(s)	121, 187, 464, 475, 481, 532, 799, 1084
HpyCH4III	ACNGT	6 cut(s)	91, 150, 187, 404, 620, 787
HpyCH4IV	ACGT	1 cut(s)	759
HpyCH4V	TGCA	4 cut(s)	832, 938, 983, 1013
HpyF10VI	GCNNNNNNNGC	2 cut(s)	838, 1010
HpyF3I	CTNAG	5 cut(s)	259, 747, 927, 1050, 1209
HpySE526I	ACGT	1 cut(s)	759
Hsp92I	GRCGYC	4 cut(s)	141, 561, 759, 1002
Hsp92II	CATG	2 cut(s)	722, 1193
HspAI	GCGC	3 cut(s)	141, 522, 1002
KasI	GGCGCC	2 cut(s)	140, 1001
KflI	GGGWCCC	1 cut(s)	52
Ksp22I	TGATCA	1 cut(s)	715
Kzo9I	GATC	2 cut(s)	715, 1141
LmnI	GCTCC	4 cut(s)	96, 781, 961, 967
Lsp1109I	GCAGC	2 cut(s)	853, 1033
LweI	GCATC	2 cut(s)	841, 896
MaeI	CTAG	4 cut(s)	114, 413, 794, 977
MaeII	ACGT	1 cut(s)	759
MaeIII	GTNAC	1 cut(s)	614
MalI	GATC	2 cut(s)	717, 1143
MboI	GATC	2 cut(s)	715, 1141
MflI	RGATCY	1 cut(s)	1141
MhlI	GDGCHC	1 cut(s)	101
MluCI	AATT	9 cut(s)	205, 280, 290, 374, 407, 439, 461, 664, 1066
Mly113I	GGCGCC	2 cut(s)	141, 1002
MlyI	GAGTC	1 cut(s)	174
MmeI	TCCRAC	1 cut(s)	939
MseI	TTAA	4 cut(s)	209, 420, 768, 894
MspI	CCGG	4 cut(s)	74, 837, 860, 1171
MspR9I	CCNGG	8 cut(s)	49, 780, 837, 838, 861, 1149, 1172, 1225
MvaI	CCWGG	4 cut(s)	49, 780, 1149, 1225
MvnI	CGCG	2 cut(s)	522, 536
MwoI	GCNNNNNNNGC	2 cut(s)	838, 1010
NarI	GGCGCC	2 cut(s)	141, 1002
NciI	CCSGG	4 cut(s)	837, 838, 861, 1172
NdeII	GATC	2 cut(s)	715, 1141
NlaIII	CATG	2 cut(s)	722, 1193
NlaIV	GGNNCC	7 cut(s)	53, 54, 98, 142, 915, 945, 1003
NruI	TCGCGA	1 cut(s)	536
NspV	TTCGAA	1 cut(s)	682
PasI	CCCWGGG	1 cut(s)	48
PfeI	GAWTC	2 cut(s)	317, 1121
Pfl23II	CGTACG	1 cut(s)	30
PkrI	GCNGC	3 cut(s)	576, 843, 1048
PleI	GAGTC	1 cut(s)	173
PluTI	GGCGCC	2 cut(s)	144, 1005
PpsI	GAGTC	1 cut(s)	173
PpuMI	RGGWCCY	2 cut(s)	52, 944
Psp5II	RGGWCCY	2 cut(s)	52, 944
Psp6I	CCWGG	4 cut(s)	47, 778, 1147, 1223
PspGI	CCWGG	4 cut(s)	47, 778, 1147, 1223
PspLI	CGTACG	1 cut(s)	30
PspN4I	GGNNCC	7 cut(s)	53, 54, 98, 142, 915, 945, 1003
PspPI	GGNCC	3 cut(s)	52, 602, 944
PspPPI	RGGWCCY	2 cut(s)	52, 944
PsuI	RGATCY	1 cut(s)	1141
RruI	TCGCGA	1 cut(s)	536
RsaI	GTAC	3 cut(s)	32, 93, 495
RsaNI	GTAC	3 cut(s)	31, 92, 494
Rsr2I	CGGWCCG	1 cut(s)	602
RsrII	CGGWCCG	1 cut(s)	602
SaqAI	TTAA	4 cut(s)	209, 420, 768, 894
SatI	GCNGC	3 cut(s)	575, 842, 1047
Sau3AI	GATC	2 cut(s)	715, 1141
Sau96I	GGNCC	3 cut(s)	52, 602, 944
SchI	GAGTC	1 cut(s)	174
ScrFI	CCNGG	8 cut(s)	49, 780, 837, 838, 861, 1149, 1172, 1225
SduI	GDGCHC	1 cut(s)	101
SfaNI	GCATC	2 cut(s)	841, 896
SfoI	GGCGCC	2 cut(s)	142, 1003
SfuI	TTCGAA	1 cut(s)	682
SinI	GGWCC	3 cut(s)	52, 602, 944
SmaI	CCCGGG	1 cut(s)	838
Sse9I	AATT	9 cut(s)	205, 280, 290, 374, 407, 439, 461, 664, 1066
SsiI	CCGC	5 cut(s)	508, 520, 574, 600, 612
SspDI	GGCGCC	2 cut(s)	140, 1001
SspMI	CTAG	4 cut(s)	114, 413, 794, 977
StyD4I	CCNGG	8 cut(s)	47, 778, 835, 836, 859, 1147, 1170, 1223
StyI	CCWWGG	1 cut(s)	917
TaaI	ACNGT	6 cut(s)	91, 150, 187, 404, 620, 787
TaiI	ACGT	1 cut(s)	762
TaqI	TCGA	5 cut(s)	133, 168, 516, 659, 682
TasI	AATT	9 cut(s)	205, 280, 290, 374, 407, 439, 461, 664, 1066
TauI	GCSGC	1 cut(s)	577
TfiI	GAWTC	2 cut(s)	317, 1121
Tru1I	TTAA	4 cut(s)	209, 420, 768, 894
Tru9I	TTAA	4 cut(s)	209, 420, 768, 894
TscAI	CASTG	3 cut(s)	190, 220, 1213
TseI	GCWGC	2 cut(s)	841, 1046
TspDTI	ATGAA	2 cut(s)	677, 683
TspGWI	ACGGA	4 cut(s)	18, 109, 564, 594
TspMI	CCCGGG	1 cut(s)	836
TspRI	CASTG	3 cut(s)	190, 220, 1213
VpaK11BI	GGWCC	3 cut(s)	52, 602, 944
XapI	RAATTY	2 cut(s)	439, 664
XbaI	TCTAGA	1 cut(s)	793
XmaI	CCCGGG	1 cut(s)	836
XspI	CTAG	4 cut(s)	114, 413, 794, 977
ZraI	GACGTC	1 cut(s)	760

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.