Prupe.1G149500_v2.0.a1

1,4-beta-D-glucanase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Reverse (-)
11728849 .. 11733398
4550 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G149500.1_v2.0.a1.CDS.4

Sequence Viewer

Length: 981 bp
ATGGCCGCCGTCGAGTCCTCGATCGCTTCCAGCAGACTCAGGGCGATCTCGTCCCCGCGGTTCAAGGCGTCGTCGTCTCGGAAGGCTCGGACTCGGTTGACTTTGACGGCAGCAAGAGACTCCGGTTCCGATCCAAGCCTCCATGTCAGCTCTAACGGCAACAAGAGGCGGACCTCCGGTTCCGATCCAAGCCCGAATTCCGGTCTAGCTCCTCCCGAACCAACCTGCTCGTCTCGAACTCCTCAAACGCCAGCTCCGGATGCTCGTGGATCCTCCGCGGGATCGTCTTCAGCCACTCCTCTGCTGCTCAAACCCACCACCCTGAACCCATCAAGTGGCTCCGGCCATGTTGAAAAGCTTGGTGGTTTCAATTCCTATGTCACTGGCTCCCCTGACTCTAAGCTTGCCATTCTGGGATATGAAGCTCCAAAAGCTAGGAAGCTCGCGGACAAAATTGCAGCTGCTGGGTTCATTGTTGTGCTCCCTGACTTCTTCAACGGAGACCCTTTTGATGGGAACCTTGCCTCTCTCCCTGTTTGGATAAAAGCTCATGGAGTAGACAAGACAATCGAAGATGCAAAACCAGTAATCGAAGCTTTAAAAAGTAAAGGCGTTTCTGCAATTGGTGCTGTAGGTTTCTGTTGGGGGGGCAAGGGTGTGGTTGAACTTGCAAAGTATGACTTTATCCAAGCTGCTGTTCTGTGTCATCCTTCATTCGTCACTGTGGATGATATCAAAGCTGTTAAAGTTCCCATTTCTGTACTTGGAGCTGAGATTGATCAGCTGTCTCCACCAGAAGTCGTGAAGCAATTTGAAGAGGTTTTATCTGCAAAACCTGAGATTAAAAGCCATGTGAAGATATTCCCAAAAGTGGTACATGGATGGACCTTGAGGTACAACGATGAAGACGAAGCAGCTGTTAAAGCTGCAGAGGAGGCTCATCAAGACTTGCTGGGGTGGTTCTTGAGCCATGTCAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
DLH

Protein Analysis

327

Amino Acids

34.37

Weight (kDa)

8.84

Isoelectric Point (pI)

41.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 233
AccB7I CCANNNNNTGG 1 cut(s) 335
AccI GTMKAC 1 cut(s) 558
AccII CGCG 3 cut(s) 58, 278, 446
AccIII TCCGGA 1 cut(s) 256
AciI CCGC 7 cut(s) 6, 56, 58, 169, 276, 278, 446
AclWI GGATC 5 cut(s) 125, 179, 264, 277, 289
AcoI YGGCCR 2 cut(s) 3, 343
AcsI RAATTY 1 cut(s) 196
AcuI CTGAAG 1 cut(s) 273
AcyI GRCGYC 1 cut(s) 68
AfaI GTAC 3 cut(s) 762, 876, 896
AfiI CCNNNNNNNGG 4 cut(s) 200, 335, 512, 871
AgsI TTSAA 6 cut(s) 64, 353, 370, 496, 665, 815
AjuI GAANNNNNNNTTGG 4 cut(s) 181, 213, 681, 713
AloI GAACNNNNNNTCC 2 cut(s) 163, 195
Alw21I GWGCWC 1 cut(s) 483
Alw26I GTCTC 5 cut(s) 81, 111, 237, 495, 792
AlwI GGATC 5 cut(s) 125, 179, 264, 277, 289
AlwNI CAGNNNCTG 1 cut(s) 464
Aor13HI TCCGGA 1 cut(s) 256
AoxI GGCC 2 cut(s) 3, 343
ApeKI GCWGC 7 cut(s) 110, 304, 458, 461, 692, 914, 926
ApoI RAATTY 1 cut(s) 196
Asp700I GAANNNNTTC 1 cut(s) 860
AspS9I GGNCC 2 cut(s) 171, 885
AvaII GGWCC 2 cut(s) 171, 885
BamHI GGATCC 1 cut(s) 269
BauI CACGAG 1 cut(s) 264
BbsI GAAGAC 2 cut(s) 279, 912
Bbv12I GWGCWC 1 cut(s) 483
BbvI GCAGC 7 cut(s) 122, 291, 448, 470, 679, 913, 926
BccI CCATC 3 cut(s) 337, 506, 876
BceAI ACGGC 2 cut(s) 123, 172
BclI TGATCA 1 cut(s) 778
BcoDI GTCTC 5 cut(s) 81, 111, 237, 495, 792
BfaI CTAG 2 cut(s) 206, 435
BfmI CTRYAG 2 cut(s) 630, 927
BfuAI ACCTGC 1 cut(s) 233
BisI GCNGC 8 cut(s) 6, 111, 305, 459, 462, 693, 915, 927
BlsI GCNGC 8 cut(s) 7, 112, 306, 460, 463, 694, 916, 928
Bme18I GGWCC 2 cut(s) 171, 885
BmgT120I GGNCC 2 cut(s) 171, 885
BmiI GGNNCC 6 cut(s) 127, 181, 271, 340, 388, 518
BmsI GCATC 2 cut(s) 250, 565
BpiI GAAGAC 2 cut(s) 279, 912
BpuEI CTTGAG 1 cut(s) 910
BsaHI GRCGYC 1 cut(s) 68
BsaI GGTCTC 1 cut(s) 495
BsaJI CCNNGG 2 cut(s) 56, 276
BsaWI WCCGGW 4 cut(s) 122, 176, 200, 256
BsaXI ACNNNNNCTCC 2 cut(s) 238, 268
Bsc4I CCNNNNNNNGG 4 cut(s) 200, 335, 512, 871
Bse1I ACTGG 2 cut(s) 388, 584
BseAI TCCGGA 1 cut(s) 256
BseDI CCNNGG 2 cut(s) 56, 276
BseGI GGATG 4 cut(s) 265, 706, 733, 887
BseLI CCNNNNNNNGG 4 cut(s) 200, 335, 512, 871
BseMII CTCAG 3 cut(s) 52, 762, 828
BseNI ACTGG 2 cut(s) 388, 584
BseRI GAGGAG 4 cut(s) 201, 231, 288, 947
BseXI GCAGC 7 cut(s) 122, 291, 448, 470, 679, 913, 926
BseYI CCCAGC 2 cut(s) 464, 952
Bsh1236I CGCG 3 cut(s) 58, 278, 446
Bsh1285I CGRYCG 1 cut(s) 24
BshFI GGCC 2 cut(s) 5, 345
BsiEI CGRYCG 1 cut(s) 24
BsiHKAI GWGCWC 1 cut(s) 483
BsiSI CCGG 5 cut(s) 123, 177, 201, 257, 342
BslFI GGGAC 1 cut(s) 37
BslI CCNNNNNNNGG 4 cut(s) 200, 335, 512, 871
BsmAI GTCTC 5 cut(s) 81, 111, 237, 495, 792
BsmBI CGTCTC 2 cut(s) 81, 237
BsmFI GGGAC 1 cut(s) 37
BsnI GGCC 2 cut(s) 5, 345
Bso31I GGTCTC 1 cut(s) 495
Bsp1286I GDGCHC 1 cut(s) 483
Bsp13I TCCGGA 1 cut(s) 256
Bsp143I GATC 7 cut(s) 21, 45, 130, 184, 269, 281, 778
BspACI CCGC 7 cut(s) 6, 56, 58, 169, 276, 278, 446
BspANI GGCC 2 cut(s) 5, 345
BspCNI CTCAG 3 cut(s) 51, 763, 829
BspEI TCCGGA 1 cut(s) 256
BspFNI CGCG 3 cut(s) 58, 278, 446
BspLI GGNNCC 6 cut(s) 127, 181, 271, 340, 388, 518
BspMAI CTGCAG 1 cut(s) 931
BspMI ACCTGC 1 cut(s) 233
BspPI GGATC 5 cut(s) 125, 179, 264, 277, 289
BspTNI GGTCTC 1 cut(s) 495
BsrI ACTGG 2 cut(s) 388, 584
BssECI CCNNGG 2 cut(s) 56, 276
BssMI GATC 7 cut(s) 21, 45, 130, 184, 269, 281, 778
BssNI GRCGYC 1 cut(s) 68
BssSI CACGAG 1 cut(s) 264
Bst2BI CACGAG 1 cut(s) 264
Bst4CI ACNGT 1 cut(s) 724
Bst6I CTCTTC 1 cut(s) 810
BstACI GRCGYC 1 cut(s) 68
BstAPI GCANNNNNTGC 1 cut(s) 626
BstC8I GCNNGC 3 cut(s) 252, 405, 444
BstDEI CTNAG 4 cut(s) 38, 399, 771, 837
BstDSI CCRYGG 2 cut(s) 56, 276
BstF5I GGATG 4 cut(s) 265, 706, 733, 887
BstFNI CGCG 3 cut(s) 58, 278, 446
BstKTI GATC 7 cut(s) 24, 48, 133, 187, 272, 284, 781
BstMAI GTCTC 5 cut(s) 81, 111, 237, 495, 792
BstMBI GATC 7 cut(s) 21, 45, 130, 184, 269, 281, 778
BstMCI CGRYCG 1 cut(s) 24
BstMWI GCNNNNNNNGC 6 cut(s) 156, 260, 431, 626, 923, 935
BstSFI CTRYAG 2 cut(s) 630, 927
BstUI CGCG 3 cut(s) 58, 278, 446
BstV1I GCAGC 7 cut(s) 122, 291, 448, 470, 679, 913, 926
BstV2I GAAGAC 2 cut(s) 279, 912
BstX2I RGATCY 1 cut(s) 269
BstYI RGATCY 1 cut(s) 269
BsuRI GGCC 2 cut(s) 5, 345
BtgI CCRYGG 2 cut(s) 56, 276
BtsCI GGATG 4 cut(s) 265, 706, 733, 887
BtsIMutI CAGTG 2 cut(s) 381, 720
BveI ACCTGC 1 cut(s) 233
Cac8I GCNNGC 3 cut(s) 252, 405, 444
CaiI CAGNNNCTG 1 cut(s) 464
Cfr13I GGNCC 2 cut(s) 171, 885
Cfr42I CCGCGG 2 cut(s) 59, 279
CseI GACGC 1 cut(s) 57
Csp6I GTAC 3 cut(s) 761, 875, 895
CviAII CATG 6 cut(s) 143, 347, 551, 851, 878, 971
CviQI GTAC 3 cut(s) 761, 875, 895
DdeI CTNAG 4 cut(s) 38, 399, 771, 837
DpnI GATC 7 cut(s) 23, 47, 132, 186, 271, 283, 780
DpnII GATC 7 cut(s) 21, 45, 130, 184, 269, 281, 778
DraI TTTAAA 1 cut(s) 600
EaeI YGGCCR 2 cut(s) 3, 343
Eam1104I CTCTTC 1 cut(s) 810
EarI CTCTTC 1 cut(s) 810
EciI GGCGGA 1 cut(s) 184
Eco31I GGTCTC 1 cut(s) 495
Eco32I GATATC 1 cut(s) 733
Eco47I GGWCC 2 cut(s) 171, 885
Eco57I CTGAAG 1 cut(s) 273
EcoRI GAATTC 1 cut(s) 196
EcoRV GATATC 1 cut(s) 733
Esp3I CGTCTC 2 cut(s) 81, 237
FaeI CATG 6 cut(s) 146, 350, 554, 854, 881, 974
FaiI YATR 9 cut(s) 144, 348, 378, 420, 552, 678, 852, 879, 972
FalI AAGNNNNNCTT 2 cut(s) 665, 697
FaqI GGGAC 1 cut(s) 37
FatI CATG 6 cut(s) 142, 346, 550, 850, 877, 970
FauI CCCGC 2 cut(s) 63, 271
FbaI TGATCA 1 cut(s) 778
FblI GTMKAC 1 cut(s) 558
Fnu4HI GCNGC 8 cut(s) 6, 111, 305, 459, 462, 693, 915, 927
FokI GGATG 4 cut(s) 272, 693, 740, 894
Fsp4HI GCNGC 8 cut(s) 6, 111, 305, 459, 462, 693, 915, 927
FspBI CTAG 2 cut(s) 206, 435
GluI GCNGC 8 cut(s) 6, 111, 305, 459, 462, 693, 915, 927
GsaI CCCAGC 2 cut(s) 468, 956
HaeIII GGCC 2 cut(s) 5, 345
HapII CCGG 5 cut(s) 123, 177, 201, 257, 342
HgaI GACGC 1 cut(s) 57
Hin1I GRCGYC 1 cut(s) 68
Hin1II CATG 6 cut(s) 146, 350, 554, 854, 881, 974
HincII GTYRAC 1 cut(s) 99
HindII GTYRAC 1 cut(s) 99
HindIII AAGCTT 3 cut(s) 356, 401, 594
HinfI GANTC 5 cut(s) 14, 36, 91, 119, 395
HpaII CCGG 5 cut(s) 123, 177, 201, 257, 342
Hpy166II GTNNAC 2 cut(s) 99, 559
Hpy188I TCNGA 4 cut(s) 81, 90, 130, 184
Hpy188III TCNNGA 6 cut(s) 215, 234, 257, 802, 944, 964
Hpy8I GTNNAC 2 cut(s) 99, 559
Hpy99I CGWCG 3 cut(s) 14, 73, 76
HpyAV CCTTC 2 cut(s) 76, 720
HpyCH4III ACNGT 1 cut(s) 724
HpyCH4V TGCA 6 cut(s) 458, 578, 620, 671, 830, 929
HpyF10VI GCNNNNNNNGC 6 cut(s) 156, 260, 431, 626, 923, 935
HpyF3I CTNAG 4 cut(s) 38, 399, 771, 837
Hsp92I GRCGYC 1 cut(s) 68
Hsp92II CATG 6 cut(s) 146, 350, 554, 854, 881, 974
Kpn2I TCCGGA 1 cut(s) 256
Ksp22I TGATCA 1 cut(s) 778
KspI CCGCGG 2 cut(s) 59, 279
Kzo9I GATC 7 cut(s) 21, 45, 130, 184, 269, 281, 778
LmnI GCTCC 7 cut(s) 214, 259, 344, 392, 430, 486, 767
Lsp1109I GCAGC 7 cut(s) 122, 291, 448, 470, 679, 913, 926
LweI GCATC 2 cut(s) 250, 565
MaeI CTAG 2 cut(s) 206, 435
MaeIII GTNAC 2 cut(s) 379, 718
MalI GATC 7 cut(s) 23, 47, 132, 186, 271, 283, 780
MboI GATC 7 cut(s) 21, 45, 130, 184, 269, 281, 778
MboII GAAGA 6 cut(s) 279, 484, 584, 827, 868, 917
MfeI CAATTG 1 cut(s) 621
MflI RGATCY 1 cut(s) 269
MhlI GDGCHC 1 cut(s) 483
MluCI AATT 5 cut(s) 196, 370, 453, 621, 809
MlyI GAGTC 5 cut(s) 23, 30, 85, 113, 389
MroI TCCGGA 1 cut(s) 256
MroXI GAANNNNTTC 1 cut(s) 860
MseI TTAA 4 cut(s) 599, 744, 843, 921
MslI CAYNNNNRTG 1 cut(s) 476
MspA1I CMGCKG 5 cut(s) 58, 278, 461, 784, 917
MspI CCGG 5 cut(s) 123, 177, 201, 257, 342
MunI CAATTG 1 cut(s) 621
MvnI CGCG 3 cut(s) 58, 278, 446
MwoI GCNNNNNNNGC 6 cut(s) 156, 260, 431, 626, 923, 935
NdeII GATC 7 cut(s) 21, 45, 130, 184, 269, 281, 778
NlaIII CATG 6 cut(s) 146, 350, 554, 854, 881, 974
NlaIV GGNNCC 6 cut(s) 127, 181, 271, 340, 388, 518
NmuCI GTSAC 2 cut(s) 379, 718
PcsI WCGNNNNNNNCGW 1 cut(s) 906
PdmI GAANNNNTTC 1 cut(s) 860
PflMI CCANNNNNTGG 1 cut(s) 335
PkrI GCNGC 8 cut(s) 7, 112, 306, 460, 463, 694, 916, 928
Ple19I CGATCG 1 cut(s) 24
PleI GAGTC 5 cut(s) 22, 30, 85, 113, 389
PpsI GAGTC 5 cut(s) 22, 30, 85, 113, 389
PspFI CCCAGC 2 cut(s) 464, 952
PspN4I GGNNCC 6 cut(s) 127, 181, 271, 340, 388, 518
PspPI GGNCC 2 cut(s) 171, 885
PstI CTGCAG 1 cut(s) 931
PstNI CAGNNNCTG 1 cut(s) 464
PsuI RGATCY 1 cut(s) 269
PvuI CGATCG 1 cut(s) 24
PvuII CAGCTG 3 cut(s) 461, 784, 917
RsaI GTAC 3 cut(s) 762, 876, 896
RsaNI GTAC 3 cut(s) 761, 875, 895
RseI CAYNNNNRTG 1 cut(s) 476
SacII CCGCGG 2 cut(s) 59, 279
SaqAI TTAA 4 cut(s) 599, 744, 843, 921
SatI GCNGC 8 cut(s) 6, 111, 305, 459, 462, 693, 915, 927
Sau3AI GATC 7 cut(s) 21, 45, 130, 184, 269, 281, 778
Sau96I GGNCC 2 cut(s) 171, 885
SchI GAGTC 5 cut(s) 23, 30, 85, 113, 389
SduI GDGCHC 1 cut(s) 483
SfaNI GCATC 2 cut(s) 250, 565
SfcI CTRYAG 2 cut(s) 630, 927
Sfr303I CCGCGG 2 cut(s) 59, 279
SgrBI CCGCGG 2 cut(s) 59, 279
SinI GGWCC 2 cut(s) 171, 885
SmiMI CAYNNNNRTG 1 cut(s) 476
SmlI CTYRAG 2 cut(s) 889, 964
SmoI CTYRAG 2 cut(s) 889, 964
Sse9I AATT 5 cut(s) 196, 370, 453, 621, 809
SsiI CCGC 7 cut(s) 6, 56, 58, 169, 276, 278, 446
SspMI CTAG 2 cut(s) 206, 435
TaaI ACNGT 1 cut(s) 724
TaqI TCGA 5 cut(s) 12, 20, 235, 570, 591
TasI AATT 5 cut(s) 196, 370, 453, 621, 809
TatI WGTACW 1 cut(s) 760
TauI GCSGC 1 cut(s) 8
Tru1I TTAA 4 cut(s) 599, 744, 843, 921
Tru9I TTAA 4 cut(s) 599, 744, 843, 921
TscAI CASTG 2 cut(s) 388, 727
TseFI GTSAC 2 cut(s) 379, 718
TseI GCWGC 7 cut(s) 110, 304, 458, 461, 692, 914, 926
Tsp45I GTSAC 2 cut(s) 379, 718
TspDTI ATGAA 4 cut(s) 435, 460, 702, 918
TspGWI ACGGA 1 cut(s) 513
TspRI CASTG 2 cut(s) 388, 727
Van91I CCANNNNNTGG 1 cut(s) 335
VpaK11BI GGWCC 2 cut(s) 171, 885
XapI RAATTY 1 cut(s) 196
XmiI GTMKAC 1 cut(s) 558
XmnI GAANNNNTTC 1 cut(s) 860
XspI CTAG 2 cut(s) 206, 435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.