Prupe.1G150700_v2.0.a1

Zinc finger BED domain-containing protein RICESLEEPER

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Forward (+)
11870956 .. 11872712
1757 bp
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UTR
Exon/CDS
Intron
Prupe.1G150700.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 333 bp
ATGTCAGATCTTCAATCGACCTTGGATCTTTCAGCGACAACATTGGCGTCGGCACGTCGCTCCTTCATCGATCTATCGATCTCTCGTCTGCCAGCAGCATCACAAAATTCAACACCATCACCATTAGAACCTAGTACTGGGAAGAGGAAACCTTGTAAGAAGGAGAGTGATGTGTGGGAACACTTTGAAAAGTATGATTTGGTATTGGATATGAAAGCGGTAGATGGGACTAAAAGAAAAGAAGTTGAAAAAAGGCTAAGTGCAAGTATTGTAGTGCTACTTATGCTAGTGATACTAAGAAAAATGGCACTAGCAACATGTGGAAGCATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

111

Amino Acids

12.12

Weight (kDa)

9.26

Isoelectric Point (pI)

59.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 218
AclWI GGATC 1 cut(s) 33
AcsI RAATTY 1 cut(s) 106
AcyI GRCGYC 1 cut(s) 47
AfaI GTAC 1 cut(s) 136
AfiI CCNNNNNNNGG 1 cut(s) 137
AflIII ACRYGT 1 cut(s) 317
AgsI TTSAA 4 cut(s) 14, 111, 188, 248
AjiI CACGTC 1 cut(s) 56
AlwI GGATC 1 cut(s) 33
ApeKI GCWGC 1 cut(s) 95
ApoI RAATTY 1 cut(s) 106
AsuHPI GGTGA 1 cut(s) 111
BbvI GCAGC 1 cut(s) 107
BccI CCATC 2 cut(s) 124, 218
BfaI CTAG 3 cut(s) 132, 287, 311
BglII AGATCT 1 cut(s) 7
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
BmcAI AGTACT 1 cut(s) 136
BmgBI CACGTC 1 cut(s) 56
BmrI ACTGGG 1 cut(s) 147
BmsI GCATC 1 cut(s) 107
BmuI ACTGGG 1 cut(s) 147
Bsa29I ATCGAT 2 cut(s) 69, 77
BsaHI GRCGYC 1 cut(s) 47
BsaJI CCNNGG 1 cut(s) 21
Bsc4I CCNNNNNNNGG 1 cut(s) 137
Bse1I ACTGG 1 cut(s) 142
BseCI ATCGAT 2 cut(s) 69, 77
BseDI CCNNGG 1 cut(s) 21
BseLI CCNNNNNNNGG 1 cut(s) 137
BseNI ACTGG 1 cut(s) 142
BseXI GCAGC 1 cut(s) 107
BshVI ATCGAT 2 cut(s) 69, 77
BslFI GGGAC 1 cut(s) 241
BslI CCNNNNNNNGG 1 cut(s) 137
BsmFI GGGAC 1 cut(s) 241
Bsp143I GATC 4 cut(s) 7, 25, 70, 78
BspACI CCGC 1 cut(s) 218
BspDI ATCGAT 2 cut(s) 69, 77
BspPI GGATC 1 cut(s) 33
BsrI ACTGG 1 cut(s) 142
BssECI CCNNGG 1 cut(s) 21
BssMI GATC 4 cut(s) 7, 25, 70, 78
BssNI GRCGYC 1 cut(s) 47
BssT1I CCWWGG 1 cut(s) 21
Bst6I CTCTTC 1 cut(s) 137
BstACI GRCGYC 1 cut(s) 47
BstC8I GCNNGC 1 cut(s) 93
BstDEI CTNAG 2 cut(s) 257, 296
BstKTI GATC 4 cut(s) 10, 28, 73, 81
BstMBI GATC 4 cut(s) 7, 25, 70, 78
BstMWI GCNNNNNNNGC 1 cut(s) 283
BstNSI RCATGY 1 cut(s) 321
BstV1I GCAGC 1 cut(s) 107
BstX2I RGATCY 2 cut(s) 7, 25
BstYI RGATCY 2 cut(s) 7, 25
Bsu15I ATCGAT 2 cut(s) 69, 77
BsuTUI ATCGAT 2 cut(s) 69, 77
BtrI CACGTC 1 cut(s) 56
Cac8I GCNNGC 1 cut(s) 93
ClaI ATCGAT 2 cut(s) 69, 77
CseI GACGC 1 cut(s) 36
Csp6I GTAC 1 cut(s) 135
CviAII CATG 1 cut(s) 318
CviJI RGCY 1 cut(s) 256
CviKI_1 RGCY 1 cut(s) 256
CviQI GTAC 1 cut(s) 135
DdeI CTNAG 2 cut(s) 257, 296
DpnI GATC 4 cut(s) 9, 27, 72, 80
DpnII GATC 4 cut(s) 7, 25, 70, 78
Eam1104I CTCTTC 1 cut(s) 137
EarI CTCTTC 1 cut(s) 137
Eco130I CCWWGG 1 cut(s) 21
EcoT14I CCWWGG 1 cut(s) 21
ErhI CCWWGG 1 cut(s) 21
FaeI CATG 1 cut(s) 321
FaiI YATR 4 cut(s) 195, 212, 284, 319
FaqI GGGAC 1 cut(s) 241
FatI CATG 1 cut(s) 317
Fnu4HI GCNGC 1 cut(s) 96
Fsp4HI GCNGC 1 cut(s) 96
FspBI CTAG 3 cut(s) 132, 287, 311
GluI GCNGC 1 cut(s) 96
HgaI GACGC 1 cut(s) 36
Hin1I GRCGYC 1 cut(s) 47
Hin1II CATG 1 cut(s) 321
HphI GGTGA 1 cut(s) 111
Hpy188I TCNGA 1 cut(s) 7
Hpy99I CGWCG 2 cut(s) 52, 60
HpyAV CCTTC 2 cut(s) 73, 154
HpyCH4IV ACGT 1 cut(s) 55
HpyCH4V TGCA 1 cut(s) 263
HpyF10VI GCNNNNNNNGC 1 cut(s) 283
HpyF3I CTNAG 2 cut(s) 257, 296
HpySE526I ACGT 1 cut(s) 55
Hsp92I GRCGYC 1 cut(s) 47
Hsp92II CATG 1 cut(s) 321
Kzo9I GATC 4 cut(s) 7, 25, 70, 78
LmnI GCTCC 1 cut(s) 65
LpnPI CCDG 2 cut(s) 105, 123
Lsp1109I GCAGC 1 cut(s) 107
LweI GCATC 1 cut(s) 107
MaeI CTAG 3 cut(s) 132, 287, 311
MaeII ACGT 1 cut(s) 55
MalI GATC 4 cut(s) 9, 27, 72, 80
MboI GATC 4 cut(s) 7, 25, 70, 78
MboII GAAGA 1 cut(s) 154
MflI RGATCY 2 cut(s) 7, 25
MluCI AATT 1 cut(s) 106
MnlI CCTC 1 cut(s) 138
MwoI GCNNNNNNNGC 1 cut(s) 283
NdeII GATC 4 cut(s) 7, 25, 70, 78
NlaIII CATG 1 cut(s) 321
NspI RCATGY 1 cut(s) 321
PciI ACATGT 1 cut(s) 317
PkrI GCNGC 1 cut(s) 97
PscI ACATGT 1 cut(s) 317
PsuI RGATCY 2 cut(s) 7, 25
RsaI GTAC 1 cut(s) 136
RsaNI GTAC 1 cut(s) 135
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 4 cut(s) 7, 25, 70, 78
ScaI AGTACT 1 cut(s) 136
SetI ASST 4 cut(s) 23, 58, 133, 154
SfaNI GCATC 1 cut(s) 107
Sse9I AATT 1 cut(s) 106
SsiI CCGC 1 cut(s) 218
SspMI CTAG 3 cut(s) 132, 287, 311
StyI CCWWGG 1 cut(s) 21
TaiI ACGT 1 cut(s) 58
TaqI TCGA 3 cut(s) 17, 69, 77
TasI AATT 1 cut(s) 106
TatI WGTACW 1 cut(s) 134
TseI GCWGC 1 cut(s) 95
TspDTI ATGAA 2 cut(s) 55, 227
XapI RAATTY 1 cut(s) 106
XceI RCATGY 1 cut(s) 321
XspI CTAG 3 cut(s) 132, 287, 311
ZrmI AGTACT 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.