Prupe.1G150900_v2.0.a1

LYK5-like

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Forward (+)
11924149 .. 11924551
403 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G150900.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 351 bp
ATGAGCCCCCCAGCCACCTCCTCTGCCTCGTTCAATCTAGGAAAGCCAATCATGTATGAGATCAAAACAATTATGGAGGCAACCATGAATCTCAGCGAACACTGCAGGATTGGAGGGTCTGTATACAGAGCCATAATCGATGGGCAGGTCTTAGCTGTAAAGAACACCAAGGAAGATGTCACAGAGGAACTAAATATTCTGCAGAAGGTAAATCATGCAAATCTGGTGAAACTAATGGGCATCTCGTCTGACCATTTGGAGGCCTTTGGTTTTCCCATGCCTCCCTTTGTCACACCACCTTCTTTAAAACTCATTTTCCCAAATCAACTCATTTTCCCAAATCAACAGTGA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

117

Amino Acids

12.81

Weight (kDa)

6.26

Isoelectric Point (pI)

47.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 136
AccI GTMKAC 1 cut(s) 123
AfiI CCNNNNNNNGG 1 cut(s) 259
AgsI TTSAA 1 cut(s) 34
AluBI AGCT 1 cut(s) 155
AluI AGCT 1 cut(s) 155
AoxI GGCC 1 cut(s) 261
AsuHPI GGTGA 1 cut(s) 238
BanII GRGCYC 1 cut(s) 8
BccI CCATC 1 cut(s) 134
BfaI CTAG 1 cut(s) 38
BfmI CTRYAG 2 cut(s) 103, 200
BfuAI ACCTGC 1 cut(s) 136
BmsI GCATC 1 cut(s) 249
Bsa29I ATCGAT 1 cut(s) 138
BsaJI CCNNGG 1 cut(s) 168
BsaXI ACNNNNNCTCC 2 cut(s) 105, 135
Bsc4I CCNNNNNNNGG 1 cut(s) 259
BseCI ATCGAT 1 cut(s) 138
BseDI CCNNGG 1 cut(s) 168
BseLI CCNNNNNNNGG 1 cut(s) 259
BseMII CTCAG 1 cut(s) 106
BseRI GAGGAG 1 cut(s) 10
BseYI CCCAGC 1 cut(s) 10
BshFI GGCC 1 cut(s) 263
BshVI ATCGAT 1 cut(s) 138
BslI CCNNNNNNNGG 1 cut(s) 259
BsnI GGCC 1 cut(s) 263
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 1 cut(s) 60
BspANI GGCC 1 cut(s) 263
BspCNI CTCAG 1 cut(s) 105
BspDI ATCGAT 1 cut(s) 138
BspMAI CTGCAG 2 cut(s) 107, 204
BspMI ACCTGC 1 cut(s) 136
BssECI CCNNGG 1 cut(s) 168
BssMI GATC 1 cut(s) 60
BssNAI GTATAC 1 cut(s) 124
BssT1I CCWWGG 1 cut(s) 168
Bst1107I GTATAC 1 cut(s) 124
Bst4CI ACNGT 1 cut(s) 348
BstDEI CTNAG 2 cut(s) 92, 151
BstKTI GATC 1 cut(s) 63
BstMBI GATC 1 cut(s) 60
BstMWI GCNNNNNNNGC 1 cut(s) 102
BstSFI CTRYAG 2 cut(s) 103, 200
BstZ17I GTATAC 1 cut(s) 124
Bsu15I ATCGAT 1 cut(s) 138
BsuRI GGCC 1 cut(s) 263
BsuTUI ATCGAT 1 cut(s) 138
BtsI GCAGTG 1 cut(s) 100
BtsIMutI CAGTG 1 cut(s) 100
BveI ACCTGC 1 cut(s) 136
ClaI ATCGAT 1 cut(s) 138
CviAII CATG 4 cut(s) 52, 85, 215, 277
CviJI RGCY 6 cut(s) 6, 14, 46, 131, 155, 263
CviKI_1 RGCY 6 cut(s) 6, 14, 46, 131, 155, 263
DdeI CTNAG 2 cut(s) 92, 151
DpnI GATC 1 cut(s) 62
DpnII GATC 1 cut(s) 60
DraI TTTAAA 1 cut(s) 306
Eco130I CCWWGG 1 cut(s) 168
Eco147I AGGCCT 1 cut(s) 263
Eco24I GRGCYC 1 cut(s) 8
EcoT14I CCWWGG 1 cut(s) 168
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 1 cut(s) 168
FaeI CATG 4 cut(s) 55, 88, 218, 280
FaiI YATR 8 cut(s) 53, 57, 74, 86, 124, 134, 216, 278
FatI CATG 4 cut(s) 51, 84, 214, 276
FblI GTMKAC 1 cut(s) 123
FriOI GRGCYC 1 cut(s) 8
FspBI CTAG 1 cut(s) 38
GsaI CCCAGC 1 cut(s) 14
HaeIII GGCC 1 cut(s) 263
Hin1II CATG 4 cut(s) 55, 88, 218, 280
HinfI GANTC 1 cut(s) 88
HphI GGTGA 1 cut(s) 238
Hpy166II GTNNAC 1 cut(s) 124
Hpy188I TCNGA 1 cut(s) 250
Hpy8I GTNNAC 1 cut(s) 124
HpyAV CCTTC 2 cut(s) 199, 309
HpyCH4III ACNGT 1 cut(s) 348
HpyCH4V TGCA 3 cut(s) 105, 202, 218
HpyF10VI GCNNNNNNNGC 1 cut(s) 102
HpyF3I CTNAG 2 cut(s) 92, 151
Hsp92II CATG 4 cut(s) 55, 88, 218, 280
Kzo9I GATC 1 cut(s) 60
LpnPI CCDG 4 cut(s) 24, 91, 131, 209
LweI GCATC 1 cut(s) 249
MaeI CTAG 1 cut(s) 38
MaeIII GTNAC 2 cut(s) 178, 289
MalI GATC 1 cut(s) 62
MboI GATC 1 cut(s) 60
MboII GAAGA 1 cut(s) 185
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 1 cut(s) 69
MnlI CCTC 8 cut(s) 28, 31, 37, 70, 107, 178, 253, 291
MseI TTAA 1 cut(s) 305
MwoI GCNNNNNNNGC 1 cut(s) 102
NdeII GATC 1 cut(s) 60
NlaIII CATG 4 cut(s) 55, 88, 218, 280
NmuCI GTSAC 2 cut(s) 178, 289
PceI AGGCCT 1 cut(s) 263
PfeI GAWTC 1 cut(s) 88
PspFI CCCAGC 1 cut(s) 10
PstI CTGCAG 2 cut(s) 107, 204
SaqAI TTAA 1 cut(s) 305
Sau3AI GATC 1 cut(s) 60
SduI GDGCHC 1 cut(s) 8
SetI ASST 5 cut(s) 20, 150, 157, 210, 301
SfaNI GCATC 1 cut(s) 249
SfcI CTRYAG 2 cut(s) 103, 200
Sse9I AATT 1 cut(s) 69
SseBI AGGCCT 1 cut(s) 263
SspI AATATT 1 cut(s) 196
SspMI CTAG 1 cut(s) 38
StuI AGGCCT 1 cut(s) 263
StyI CCWWGG 1 cut(s) 168
TaaI ACNGT 1 cut(s) 348
TaqI TCGA 1 cut(s) 138
TasI AATT 1 cut(s) 69
TfiI GAWTC 1 cut(s) 88
Tru1I TTAA 1 cut(s) 305
Tru9I TTAA 1 cut(s) 305
TscAI CASTG 1 cut(s) 107
TseFI GTSAC 2 cut(s) 178, 289
Tsp45I GTSAC 2 cut(s) 178, 289
TspDTI ATGAA 1 cut(s) 101
TspRI CASTG 1 cut(s) 107
XmiI GTMKAC 1 cut(s) 123
XspI CTAG 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.