Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0029171

Physical Location & Seq

Genomic Coordinates Reverse (-)

12110798 .. 12118597

Gene Structure 7800 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G153800.1_v2.0.a1.CDS.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGCAGTGTCGGCTGATCATTGCCGGATTTCGCTCTCCGCCCCCAGCCAACTGTGTGGGGCTGCCGGGTTTTCGGGGAGGAGGCAGAGGGTTGTGAAGTTTTGCAATGGAGACTTGATGGGGAAGAAGCTGAACCTGACCCAGCTTCAGCTTGGAGCTGCTAATGTTAAAAAGAACGGTGGGGTTGGGAAACATGTTTGCATGTCTCTCACTACCGATGTGCCAGTTGGCGAGGCCAAGTTGAGGGACATAGATATAGAGAAGCGGGACCCACGGACAGTTGTTGCGATCATACTGGGAGGTGGAGCTGGGACTCGGCTTTTCCCACTCACCAAGAGGCGTGCCAAACCTGCTGTCCCAATAGGGGGAGCATACAGGCTGATTGATGTGCCAATGAGCAACTGCATCAACAGTGGAATCAACAAAGTTTATATCCTCACTCAGTTCAACTCAACATCACTCAACAGGCATATTTCCCGCGCTTACAACTTTGGCAGTGGCACCAGCTTTGGCGACGGCTGTGTAGAGGTTCTAGCAGCAACTCAAACTCCAGGAGCGGCAGGCCAGAAGTGGTTCCAGGGTACTGCAGACGCCGTGCGGCAGTTCCATTGGCTTTTCGAGCTGGCTATTTACTGGTGTGATACGGGACCTGAAGATCTGTATATAGTGATGCAATATGTCGCTGCAATTGTGGCCACCTGGGTTCCAGAAAGCATGTTGGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008878 GO:0009501 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0016740 GO:0016772 GO:0016779 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070566

KEGG Pathways

Metabolic & Signaling

ko00500 ko00520 ko01100 ko01110 ko02026 map00500 map00520 map01100 map01110 map02026

Pfam Domains

Protein Families

NTP_transferase

Protein Analysis

242

Amino Acids

25.94

Weight (kDa)

9.33

Isoelectric Point (pI)

32.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029171)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G153800_v2.0.a1 Prupe.1G153800_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	358
AccB1I	GGYRCC	1 cut(s)	500
AccBSI	CCGCTC	1 cut(s)	557
AccII	CGCG	1 cut(s)	480
AciI	CCGC	5 cut(s)	39, 265, 478, 557, 598
AcoI	YGGCCR	1 cut(s)	693
AcuI	CTGAAG	2 cut(s)	131, 672
AcyI	GRCGYC	1 cut(s)	591
AfaI	GTAC	1 cut(s)	583
AfiI	CCNNNNNNNGG	3 cut(s)	243, 364, 365
AflIII	ACRYGT	1 cut(s)	193
AgsI	TTSAA	1 cut(s)	448
AjnI	CCWGG	3 cut(s)	550, 576, 698
AluBI	AGCT	7 cut(s)	130, 145, 151, 158, 308, 507, 622
AluI	AGCT	7 cut(s)	130, 145, 151, 158, 308, 507, 622
Alw26I	GTCTC	2 cut(s)	105, 210
AoxI	GGCC	3 cut(s)	234, 562, 693
ApeKI	GCWGC	4 cut(s)	62, 158, 536, 683
ArsI	GACNNNNNNTTYG	2 cut(s)	339, 371
Asp700I	GAANNNNTTC	1 cut(s)	572
AspLEI	GCGC	1 cut(s)	482
AspS9I	GGNCC	2 cut(s)	268, 647
AsuC2I	CCSGG	1 cut(s)	67
AsuHPI	GGTGA	1 cut(s)	322
AvaII	GGWCC	2 cut(s)	268, 647
BalI	TGGCCA	1 cut(s)	695
BanI	GGYRCC	1 cut(s)	500
BbvI	GCAGC	4 cut(s)	49, 145, 548, 670
BccI	CCATC	1 cut(s)	112
BceAI	ACGGC	2 cut(s)	532, 578
BciT130I	CCWGG	3 cut(s)	552, 578, 700
BclI	TGATCA	1 cut(s)	16
BcnI	CCSGG	1 cut(s)	67
BcoDI	GTCTC	2 cut(s)	105, 210
BfaI	CTAG	2 cut(s)	533, 724
BfmI	CTRYAG	1 cut(s)	585
BfuAI	ACCTGC	1 cut(s)	358
BglII	AGATCT	1 cut(s)	655
BisI	GCNGC	6 cut(s)	63, 159, 537, 558, 599, 684
BlsI	GCNGC	6 cut(s)	64, 160, 538, 559, 600, 685
Bme1390I	CCNGG	4 cut(s)	67, 552, 578, 700
Bme18I	GGWCC	2 cut(s)	268, 647
BmgT120I	GGNCC	2 cut(s)	268, 647
BmiI	GGNNCC	6 cut(s)	269, 270, 502, 575, 648, 705
BmrFI	CCNGG	4 cut(s)	67, 552, 578, 700
BmrI	ACTGGG	1 cut(s)	305
BmsI	GCATC	2 cut(s)	414, 660
BmuI	ACTGGG	1 cut(s)	305
BpmI	CTGGAG	1 cut(s)	534
BpuMI	CCSGG	1 cut(s)	67
BsaHI	GRCGYC	1 cut(s)	591
BsaJI	CCNNGG	3 cut(s)	272, 577, 699
BsaXI	ACNNNNNCTCC	2 cut(s)	532, 562
Bsc4I	CCNNNNNNNGG	3 cut(s)	243, 364, 365
Bse1I	ACTGG	3 cut(s)	224, 300, 638
Bse3DI	GCAATG	2 cut(s)	19, 112
BseBI	CCWGG	3 cut(s)	552, 578, 700
BseDI	CCNNGG	3 cut(s)	272, 577, 699
BseLI	CCNNNNNNNGG	3 cut(s)	243, 364, 365
BseMI	GCAATG	2 cut(s)	19, 112
BseMII	CTCAG	1 cut(s)	455
BseNI	ACTGG	3 cut(s)	224, 300, 638
BseRI	GAGGAG	1 cut(s)	94
BseXI	GCAGC	4 cut(s)	49, 145, 548, 670
BseYI	CCCAGC	3 cut(s)	44, 141, 308
Bsh1236I	CGCG	1 cut(s)	480
BshFI	GGCC	3 cut(s)	236, 564, 695
BshNI	GGYRCC	1 cut(s)	500
BsiSI	CCGG	2 cut(s)	25, 66
BslFI	GGGAC	5 cut(s)	260, 281, 325, 341, 660
BslI	CCNNNNNNNGG	3 cut(s)	243, 364, 365
BsmAI	GTCTC	2 cut(s)	105, 210
BsmFI	GGGAC	5 cut(s)	260, 281, 325, 341, 660
BsnI	GGCC	3 cut(s)	236, 564, 695
Bsp143I	GATC	3 cut(s)	16, 288, 655
BspACI	CCGC	5 cut(s)	39, 265, 478, 557, 598
BspANI	GGCC	3 cut(s)	236, 564, 695
BspCNI	CTCAG	1 cut(s)	454
BspFNI	CGCG	1 cut(s)	480
BspLI	GGNNCC	6 cut(s)	269, 270, 502, 575, 648, 705
BspMAI	CTGCAG	1 cut(s)	589
BspMI	ACCTGC	1 cut(s)	358
BspT107I	GGYRCC	1 cut(s)	500
BsrBI	CCGCTC	1 cut(s)	557
BsrDI	GCAATG	2 cut(s)	19, 112
BsrI	ACTGG	3 cut(s)	224, 300, 638
BssECI	CCNNGG	3 cut(s)	272, 577, 699
BssMI	GATC	3 cut(s)	16, 288, 655
BssNI	GRCGYC	1 cut(s)	591
Bst2UI	CCWGG	3 cut(s)	552, 578, 700
Bst4CI	ACNGT	4 cut(s)	54, 179, 280, 413
BstACI	GRCGYC	1 cut(s)	591
BstC8I	GCNNGC	3 cut(s)	342, 562, 624
BstDEI	CTNAG	1 cut(s)	441
BstDSI	CCRYGG	1 cut(s)	272
BstFNI	CGCG	1 cut(s)	480
BstHHI	GCGC	1 cut(s)	482
BstKTI	GATC	3 cut(s)	19, 291, 658
BstMAI	GTCTC	2 cut(s)	105, 210
BstMBI	GATC	3 cut(s)	16, 288, 655
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 350, 619, 692, 720
BstNI	CCWGG	3 cut(s)	552, 578, 700
BstNSI	RCATGY	3 cut(s)	197, 205, 718
BstSCI	CCNGG	4 cut(s)	65, 550, 576, 698
BstSFI	CTRYAG	1 cut(s)	585
BstUI	CGCG	1 cut(s)	480
BstV1I	GCAGC	4 cut(s)	49, 145, 548, 670
BstX2I	RGATCY	1 cut(s)	655
BstXI	CCANNNNNNTGG	1 cut(s)	56
BstYI	RGATCY	1 cut(s)	655
BsuRI	GGCC	3 cut(s)	236, 564, 695
BtgI	CCRYGG	1 cut(s)	272
BtsI	GCAGTG	2 cut(s)	12, 502
BtsIMutI	CAGTG	3 cut(s)	12, 418, 502
BveI	ACCTGC	1 cut(s)	358
Cac8I	GCNNGC	3 cut(s)	342, 562, 624
CfoI	GCGC	1 cut(s)	482
Cfr13I	GGNCC	2 cut(s)	268, 647
CseI	GACGC	1 cut(s)	599
Csp6I	GTAC	1 cut(s)	582
CviAII	CATG	3 cut(s)	194, 202, 715
CviQI	GTAC	1 cut(s)	582
DdeI	CTNAG	1 cut(s)	441
DpnI	GATC	3 cut(s)	18, 290, 657
DpnII	GATC	3 cut(s)	16, 288, 655
EaeI	YGGCCR	1 cut(s)	693
EciI	GGCGGA	1 cut(s)	28
Eco47I	GGWCC	2 cut(s)	268, 647
Eco57I	CTGAAG	2 cut(s)	131, 672
EcoO109I	RGGNCCY	2 cut(s)	268, 647
EcoRII	CCWGG	3 cut(s)	550, 576, 698
FaeI	CATG	3 cut(s)	197, 205, 718
FaqI	GGGAC	5 cut(s)	260, 281, 325, 341, 660
FatI	CATG	3 cut(s)	193, 201, 714
FauI	CCCGC	2 cut(s)	258, 485
FbaI	TGATCA	1 cut(s)	16
Fnu4HI	GCNGC	6 cut(s)	63, 159, 537, 558, 599, 684
Fsp4HI	GCNGC	6 cut(s)	63, 159, 537, 558, 599, 684
FspBI	CTAG	2 cut(s)	533, 724
GlaI	GCGC	1 cut(s)	481
GluI	GCNGC	6 cut(s)	63, 159, 537, 558, 599, 684
GsaI	CCCAGC	3 cut(s)	48, 145, 312
GsuI	CTGGAG	1 cut(s)	534
HaeIII	GGCC	3 cut(s)	236, 564, 695
HapII	CCGG	2 cut(s)	25, 66
HgaI	GACGC	1 cut(s)	599
HhaI	GCGC	1 cut(s)	482
Hin1I	GRCGYC	1 cut(s)	591
Hin1II	CATG	3 cut(s)	197, 205, 718
Hin6I	GCGC	1 cut(s)	480
HinP1I	GCGC	1 cut(s)	480
HinfI	GANTC	2 cut(s)	313, 417
HpaII	CCGG	2 cut(s)	25, 66
HphI	GGTGA	1 cut(s)	322
Hpy188III	TCNNGA	1 cut(s)	707
Hpy99I	CGWCG	1 cut(s)	518
HpyCH4III	ACNGT	4 cut(s)	54, 179, 280, 413
HpyCH4V	TGCA	6 cut(s)	105, 201, 405, 587, 673, 686
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 350, 619, 692, 720
HpyF3I	CTNAG	1 cut(s)	441
Hsp92I	GRCGYC	1 cut(s)	591
Hsp92II	CATG	3 cut(s)	197, 205, 718
HspAI	GCGC	1 cut(s)	480
KflI	GGGWCCC	1 cut(s)	268
Ksp22I	TGATCA	1 cut(s)	16
Kzo9I	GATC	3 cut(s)	16, 288, 655
LmnI	GCTCC	4 cut(s)	155, 305, 368, 554
Lsp1109I	GCAGC	4 cut(s)	49, 145, 548, 670
LweI	GCATC	2 cut(s)	414, 660
MaeI	CTAG	2 cut(s)	533, 724
MalI	GATC	3 cut(s)	18, 290, 657
MbiI	CCGCTC	1 cut(s)	557
MboI	GATC	3 cut(s)	16, 288, 655
MboII	GAAGA	2 cut(s)	136, 665
MfeI	CAATTG	1 cut(s)	687
MflI	RGATCY	1 cut(s)	655
MlsI	TGGCCA	1 cut(s)	695
MluCI	AATT	1 cut(s)	687
MluNI	TGGCCA	1 cut(s)	695
MlyI	GAGTC	1 cut(s)	307
MnlI	CCTC	9 cut(s)	72, 75, 81, 226, 237, 293, 330, 446, 520
Mox20I	TGGCCA	1 cut(s)	695
MroXI	GAANNNNTTC	1 cut(s)	572
MscI	TGGCCA	1 cut(s)	695
MseI	TTAA	1 cut(s)	168
Msp20I	TGGCCA	1 cut(s)	695
MspI	CCGG	2 cut(s)	25, 66
MspR9I	CCNGG	4 cut(s)	67, 552, 578, 700
MunI	CAATTG	1 cut(s)	687
MvaI	CCWGG	3 cut(s)	552, 578, 700
MvnI	CGCG	1 cut(s)	480
MwoI	GCNNNNNNNGC	5 cut(s)	11, 350, 619, 692, 720
NciI	CCSGG	1 cut(s)	67
NdeII	GATC	3 cut(s)	16, 288, 655
NlaIII	CATG	3 cut(s)	197, 205, 718
NlaIV	GGNNCC	6 cut(s)	269, 270, 502, 575, 648, 705
NmeAIII	GCCGAG	1 cut(s)	295
NspI	RCATGY	3 cut(s)	197, 205, 718
PciI	ACATGT	1 cut(s)	193
PdmI	GAANNNNTTC	1 cut(s)	572
PfeI	GAWTC	1 cut(s)	417
PfoI	TCCNGGA	1 cut(s)	550
PkrI	GCNGC	6 cut(s)	64, 160, 538, 559, 600, 685
PleI	GAGTC	1 cut(s)	307
PpsI	GAGTC	1 cut(s)	307
PpuMI	RGGWCCY	2 cut(s)	268, 647
PscI	ACATGT	1 cut(s)	193
Psp5II	RGGWCCY	2 cut(s)	268, 647
Psp6I	CCWGG	3 cut(s)	550, 576, 698
PspFI	CCCAGC	3 cut(s)	44, 141, 308
PspGI	CCWGG	3 cut(s)	550, 576, 698
PspN4I	GGNNCC	6 cut(s)	269, 270, 502, 575, 648, 705
PspPI	GGNCC	2 cut(s)	268, 647
PspPPI	RGGWCCY	2 cut(s)	268, 647
PstI	CTGCAG	1 cut(s)	589
PsuI	RGATCY	1 cut(s)	655
RsaI	GTAC	1 cut(s)	583
RsaNI	GTAC	1 cut(s)	582
SaqAI	TTAA	1 cut(s)	168
SatI	GCNGC	6 cut(s)	63, 159, 537, 558, 599, 684
Sau3AI	GATC	3 cut(s)	16, 288, 655
Sau96I	GGNCC	2 cut(s)	268, 647
SchI	GAGTC	1 cut(s)	307
ScrFI	CCNGG	4 cut(s)	67, 552, 578, 700
SfaNI	GCATC	2 cut(s)	414, 660
SfcI	CTRYAG	1 cut(s)	585
SinI	GGWCC	2 cut(s)	268, 647
Sse9I	AATT	1 cut(s)	687
SsiI	CCGC	5 cut(s)	39, 265, 478, 557, 598
SspMI	CTAG	2 cut(s)	533, 724
StyD4I	CCNGG	4 cut(s)	65, 550, 576, 698
TaaI	ACNGT	4 cut(s)	54, 179, 280, 413
TaqI	TCGA	1 cut(s)	618
TasI	AATT	1 cut(s)	687
TauI	GCSGC	2 cut(s)	560, 601
TfiI	GAWTC	1 cut(s)	417
Tru1I	TTAA	1 cut(s)	168
Tru9I	TTAA	1 cut(s)	168
TscAI	CASTG	3 cut(s)	12, 418, 502
TseI	GCWGC	4 cut(s)	62, 158, 536, 683
TspGWI	ACGGA	1 cut(s)	289
TspRI	CASTG	3 cut(s)	12, 418, 502
VpaK11BI	GGWCC	2 cut(s)	268, 647
XceI	RCATGY	3 cut(s)	197, 205, 718
XcmI	CCANNNNNNNNNTGG	1 cut(s)	149
XmnI	GAANNNNTTC	1 cut(s)	572
XspI	CTAG	2 cut(s)	533, 724

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.