Prupe.1G157600_v2.0.a1

F-box LRR-repeat protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
N/A
Physical Location & Seq
Forward (+)
12515733 .. 12516445
713 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G157600.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 576 bp
ATGGACTGTTTGACGTATATTTTTGGAGAACTTGGTATGGAGTCACTGCTTTCGGATGTGCCTTTGGTATGCAAGTCTTGGTATAGAGCAAGCCTCGATCCTTCATGCTGGGAATGTCTCATTTTTCAAGAAATTGAAACTAGCTATTTTGGTTTTCCCGTTGAAACTGAAAATTGGCGCAGTGTCCCCCTTTTGCAAAGATTTGTTGATGAATATCAAATTGATGAGAGTCGTTTCTCTGTCACTGCATTCATAAAGTTTGTGGCCAATCGTAGCAGAGGCCATGCTTTTTGTACTCATGCTACCTTCATGTGCTTCAGAAACAGCCTTGAAATATGTTTCAGATGTTGGAAACATTTGGAGTTTTTGATACTGGGAAGCACTCATCGTTTGGAGGAAATCCTTTCACGGATCAGCATTCACTGCAAGGATTTGTGTGCCTTACATTTGGGGAATGCTAATATCGGTAAAGATGAGGCAACGGCAATTGTTAGCTTCCTGCCCAAGATTAAATCTTTGTTCTTGAGGAGGAAGGCAGAGATTGGTCGGGATGCTCATGCTCTTATGGCGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

192

Amino Acids

22.06

Weight (kDa)

6.38

Isoelectric Point (pI)

51.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 92, 419
AcoI YGGCCR 1 cut(s) 264
AcuI CTGAAG 1 cut(s) 301
AfaI GTAC 1 cut(s) 295
AgsI TTSAA 4 cut(s) 128, 137, 164, 332
AluBI AGCT 2 cut(s) 144, 495
AluI AGCT 2 cut(s) 144, 495
Alw26I GTCTC 1 cut(s) 122
AlwI GGATC 2 cut(s) 92, 419
AoxI GGCC 2 cut(s) 264, 280
AspLEI GCGC 1 cut(s) 180
BalI TGGCCA 1 cut(s) 266
BceAI ACGGC 1 cut(s) 498
BcoDI GTCTC 1 cut(s) 122
BfaI CTAG 1 cut(s) 141
BmrI ACTGGG 1 cut(s) 383
BmsI GCATC 1 cut(s) 541
BmuI ACTGGG 1 cut(s) 383
BplI GAGNNNNNCTC 2 cut(s) 78, 110
BpuEI CTTGAG 1 cut(s) 544
BsaBI GATNNNNATC 1 cut(s) 213
Bse1I ACTGG 1 cut(s) 378
Bse8I GATNNNNATC 1 cut(s) 213
BseGI GGATG 2 cut(s) 61, 556
BseJI GATNNNNATC 1 cut(s) 213
BseNI ACTGG 1 cut(s) 378
BseRI GAGGAG 1 cut(s) 541
BseYI CCCAGC 1 cut(s) 108
BshFI GGCC 2 cut(s) 266, 282
BslFI GGGAC 1 cut(s) 170
BsmAI GTCTC 1 cut(s) 122
BsmFI GGGAC 1 cut(s) 170
BsmI GAATGC 3 cut(s) 248, 417, 460
BsnI GGCC 2 cut(s) 266, 282
Bsp143I GATC 2 cut(s) 97, 411
BspANI GGCC 2 cut(s) 266, 282
BspPI GGATC 2 cut(s) 92, 419
BsrI ACTGG 1 cut(s) 378
BssMI GATC 2 cut(s) 97, 411
Bst4CI ACNGT 1 cut(s) 8
BstAPI GCANNNNNTGC 1 cut(s) 423
BstC8I GCNNGC 1 cut(s) 91
BstF5I GGATG 2 cut(s) 61, 556
BstHHI GCGC 1 cut(s) 180
BstKTI GATC 2 cut(s) 100, 414
BstMAI GTCTC 1 cut(s) 122
BstMBI GATC 2 cut(s) 97, 411
BstMWI GCNNNNNNNGC 2 cut(s) 423, 566
BsuRI GGCC 2 cut(s) 266, 282
BtsCI GGATG 2 cut(s) 61, 556
BtsI GCAGTG 4 cut(s) 44, 187, 243, 421
BtsIMutI CAGTG 4 cut(s) 44, 187, 243, 421
Cac8I GCNNGC 1 cut(s) 91
CfoI GCGC 1 cut(s) 180
Csp6I GTAC 1 cut(s) 294
CviAII CATG 5 cut(s) 105, 284, 299, 310, 557
CviJI RGCY 6 cut(s) 93, 144, 266, 282, 327, 495
CviKI_1 RGCY 6 cut(s) 93, 144, 266, 282, 327, 495
CviQI GTAC 1 cut(s) 294
DpnI GATC 2 cut(s) 99, 413
DpnII GATC 2 cut(s) 97, 411
EaeI YGGCCR 1 cut(s) 264
Eco57I CTGAAG 1 cut(s) 301
FaeI CATG 5 cut(s) 108, 287, 302, 313, 560
FaqI GGGAC 1 cut(s) 170
FatI CATG 5 cut(s) 104, 283, 298, 309, 556
FokI GGATG 2 cut(s) 68, 563
FspBI CTAG 1 cut(s) 141
GlaI GCGC 1 cut(s) 179
GsaI CCCAGC 1 cut(s) 112
HaeIII GGCC 2 cut(s) 266, 282
HhaI GCGC 1 cut(s) 180
Hin1II CATG 5 cut(s) 108, 287, 302, 313, 560
Hin6I GCGC 1 cut(s) 178
HinP1I GCGC 1 cut(s) 178
HinfI GANTC 2 cut(s) 41, 229
Hpy188I TCNGA 3 cut(s) 55, 320, 344
Hpy188III TCNNGA 3 cut(s) 128, 523, 548
HpyAV CCTTC 3 cut(s) 111, 316, 526
HpyCH4III ACNGT 1 cut(s) 8
HpyCH4IV ACGT 1 cut(s) 14
HpyCH4V TGCA 4 cut(s) 72, 196, 248, 426
HpyF10VI GCNNNNNNNGC 2 cut(s) 423, 566
HpySE526I ACGT 1 cut(s) 14
Hsp92II CATG 5 cut(s) 108, 287, 302, 313, 560
HspAI GCGC 1 cut(s) 178
Kzo9I GATC 2 cut(s) 97, 411
LpnPI CCDG 3 cut(s) 94, 359, 512
LweI GCATC 1 cut(s) 541
MaeI CTAG 1 cut(s) 141
MaeII ACGT 1 cut(s) 14
MaeIII GTNAC 2 cut(s) 42, 241
MalI GATC 2 cut(s) 99, 413
MboI GATC 2 cut(s) 97, 411
MfeI CAATTG 1 cut(s) 486
MlsI TGGCCA 1 cut(s) 266
MluCI AATT 4 cut(s) 132, 172, 219, 486
MluNI TGGCCA 1 cut(s) 266
MlyI GAGTC 2 cut(s) 50, 238
MmeI TCCRAC 1 cut(s) 329
MnlI CCTC 6 cut(s) 104, 272, 388, 469, 519, 522
Mox20I TGGCCA 1 cut(s) 266
MscI TGGCCA 1 cut(s) 266
MseI TTAA 1 cut(s) 510
Msp20I TGGCCA 1 cut(s) 266
MunI CAATTG 1 cut(s) 486
Mva1269I GAATGC 3 cut(s) 248, 417, 460
MwoI GCNNNNNNNGC 2 cut(s) 423, 566
NdeII GATC 2 cut(s) 97, 411
NlaIII CATG 5 cut(s) 108, 287, 302, 313, 560
NmuCI GTSAC 2 cut(s) 42, 241
PctI GAATGC 3 cut(s) 248, 417, 460
PleI GAGTC 2 cut(s) 49, 237
PpsI GAGTC 2 cut(s) 49, 237
PspFI CCCAGC 1 cut(s) 108
RsaI GTAC 1 cut(s) 295
RsaNI GTAC 1 cut(s) 294
SaqAI TTAA 1 cut(s) 510
Sau3AI GATC 2 cut(s) 97, 411
SchI GAGTC 2 cut(s) 50, 238
SetI ASST 4 cut(s) 17, 146, 308, 497
SfaNI GCATC 1 cut(s) 541
SmlI CTYRAG 1 cut(s) 523
SmoI CTYRAG 1 cut(s) 523
Sse9I AATT 4 cut(s) 132, 172, 219, 486
SspMI CTAG 1 cut(s) 141
TaaI ACNGT 1 cut(s) 8
TaiI ACGT 1 cut(s) 17
TaqI TCGA 1 cut(s) 96
TasI AATT 4 cut(s) 132, 172, 219, 486
TatI WGTACW 1 cut(s) 293
Tru1I TTAA 1 cut(s) 510
Tru9I TTAA 1 cut(s) 510
TscAI CASTG 4 cut(s) 51, 187, 250, 428
TseFI GTSAC 2 cut(s) 42, 241
Tsp45I GTSAC 2 cut(s) 42, 241
TspDTI ATGAA 4 cut(s) 93, 225, 241, 298
TspGWI ACGGA 1 cut(s) 424
TspRI CASTG 4 cut(s) 51, 187, 250, 428
XspI CTAG 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.